BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0491900 Os09g0491900|AK106612
(681 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0491900 Integrase, catalytic region domain containing ... 1372 0.0
Os06g0493000 RNA-directed DNA polymerase (Reverse transcrip... 305 8e-83
Os04g0191000 Retrotransposon gag protein family protein 299 4e-81
Os10g0317000 Retrotransposon gag protein family protein 282 6e-76
Os08g0123950 Integrase, catalytic region domain containing ... 260 2e-69
Os04g0389000 Integrase, catalytic region domain containing ... 243 5e-64
Os06g0266100 Integrase, catalytic region domain containing ... 164 3e-40
Os11g0224300 Integrase, catalytic region domain containing ... 156 6e-38
Os06g0713500 Integrase, catalytic region domain containing ... 131 2e-30
Os04g0682600 Integrase, catalytic region domain containing ... 128 1e-29
Os02g0522300 Hypothetical protein 126 5e-29
Os07g0510800 RNA-directed DNA polymerase (Reverse transcrip... 100 2e-21
Os06g0513889 97 3e-20
Os06g0513835 96 1e-19
Os04g0245300 91 4e-18
Os08g0164800 RNA-directed DNA polymerase (Reverse transcrip... 88 2e-17
Os04g0134833 86 1e-16
Os06g0513700 83 6e-16
Os06g0471300 77 5e-14
Os11g0415300 75 1e-13
Os06g0541800 75 2e-13
Os07g0302600 74 4e-13
Os04g0249300 74 5e-13
Os08g0355201 Integrase, catalytic region domain containing ... 72 2e-12
Os01g0386800 66 7e-11
>Os09g0491900 Integrase, catalytic region domain containing protein
Length = 681
Score = 1372 bits (3552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/681 (96%), Positives = 659/681 (96%)
Query: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK
Sbjct: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
Query: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVPGIESIKEL 120
GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVPGIESIKEL
Sbjct: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVPGIESIKEL 120
Query: 121 YPADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHF 180
YPADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHF
Sbjct: 121 YPADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHF 180
Query: 181 GWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISM 240
GWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISM
Sbjct: 181 GWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISM 240
Query: 241 DFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIV 300
DFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIV
Sbjct: 241 DFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIV 300
Query: 301 SDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWE 360
SDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWE
Sbjct: 301 SDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWE 360
Query: 361 ECLPHVEFAYNRAVHSTTNMCPFEVVYGFKXXXXXXXXXXXXQERSDMEASKHATYVKKI 420
ECLPHVEFAYNRAVHSTTNMCPFEVVYGFK QERSDMEASKHATYVKKI
Sbjct: 361 ECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPLQERSDMEASKHATYVKKI 420
Query: 421 HEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFR 480
HEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFR
Sbjct: 421 HEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFR 480
Query: 481 VLSKINDNAYKIELPEDYGVSPTFNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVHA 540
VLSKINDNAYKIELPEDYGVSPTFNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVHA
Sbjct: 481 VLSKINDNAYKIELPEDYGVSPTFNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVHA 540
Query: 541 TSSTKQPSSNTKDTIQGPLTRSRAKKLQVQVNSFLTDFNFSTSENVILPKCSTLVVLRNI 600
TSSTKQPSSNTKDTIQGPLTRSRAKKLQVQVNSFLTDFNFSTSENVILPKCSTLVVLRNI
Sbjct: 541 TSSTKQPSSNTKDTIQGPLTRSRAKKLQVQVNSFLTDFNFSTSENVILPKCSTLVVLRNI 600
Query: 601 QHEEDESGSVDSITGVQNGPVKQNGPTAVQNGPVQRTTHNSQFTEAMEVNEDXXXXXXXX 660
QHEEDESGSVDSITGVQNGPVKQNGPTAVQNGPVQRTTHNSQFTEAMEVNED
Sbjct: 601 QHEEDESGSVDSITGVQNGPVKQNGPTAVQNGPVQRTTHNSQFTEAMEVNEDSLESLSSQ 660
Query: 661 XXNATNTKYFGLHTNENQVRL 681
NATNTKYFGLHTNENQVRL
Sbjct: 661 LSNATNTKYFGLHTNENQVRL 681
>Os06g0493000 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 866
Score = 305 bits (781), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 195/539 (36%), Positives = 276/539 (51%), Gaps = 26/539 (4%)
Query: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
MQNG+P+AY S+ +G S YDKE A++ AL+ W+HY +I +D +LKY+
Sbjct: 279 MQNGRPLAYLSKAIGPKAAALSTYDKEALAILEALKKWKHYFLGTSLIIRTDQASLKYIN 338
Query: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVPGIESIKEL 120
Q K + + ++ Y ++YKKG+EN ADALSR L N L V + I E+
Sbjct: 339 EQRITEGVQHKLLIKLLSYDYKIEYKKGQENKAADALSRMQQL-NALTTTVIVPQWITEV 397
Query: 121 ---YPADLDFSEPYAKC-TAGKGWEKYHIHDGFLFRANKLCV-PHCSVRLLLLQETHAGG 175
Y D E + A + Y + G L + + V ++R LL H
Sbjct: 398 AASYSTDPKCHELESHLHIAPQSHPPYTLKGGILRYKDHIVVGAGNTLREQLLVSFHDSA 457
Query: 176 LMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLN-PHGLYTPLPVPSAP 234
L GH G R TY + FYWP M+ V + V+ C C K K++ N P GL PLP+P
Sbjct: 458 LGGHSGERATYQRMKQLFYWPGMKLAVTQFVKACPVCQKNKTEHNMPAGLLQPLPLPEMA 517
Query: 235 WEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHG 294
W I+MDFV GLP+++ G+D I+V+VDRF+K AHFIP A I + F +LHG
Sbjct: 518 WSHITMDFVEGLPKSE-GKDVIWVIVDRFTKYAHFIPLSHPFTADQILTQFLEHFYKLHG 576
Query: 295 MPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKK 354
+P IVSDRD F S WK ++ K G +L FS+ HPQTDGQ+E VN+ L LR +
Sbjct: 577 LPTVIVSDRDRIFTSSTWKEVFEKAGVKLHFSSAYHPQTDGQSERVNQCLENYLRCMTSS 636
Query: 355 NLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKXXXXXXXX---XXXXQERSDMEAS 411
++W+ LPH E+ YN H++ M P++ ++G K ER+ EA
Sbjct: 637 KPRKWKALLPHAEWWYNTTFHTSLGMSPYQALHGIKPPLLAELLLPGSLLEGERNKQEAK 696
Query: 412 KHATYVKKIHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHL---RKDRFPQKRK 468
K H +A R KY+ A++ R++ T E GD+V++ + R +
Sbjct: 697 AALLETIKSHLVKAQA---RMKYF---ADQHRQERTLEVGDMVYLKMQPYRHNSLGLHSS 750
Query: 469 SKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVADLTPFFGLEDSESSRSTPFQ 527
KL R GPFRVL +I AYK+ LP + F+V+ L G SR+ P Q
Sbjct: 751 LKLHSRYYGPFRVLERIGSVAYKLLLPVTSQIHHVFHVSQLKKHLG------SRAVPEQ 803
>Os04g0191000 Retrotransposon gag protein family protein
Length = 1463
Score = 299 bits (766), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 187/527 (35%), Positives = 270/527 (51%), Gaps = 28/527 (5%)
Query: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
+Q+G PVA+FS + + Y++EL LV A+ W+ YLW + FV+ +DH +LKYL
Sbjct: 822 VQDGHPVAFFSRPVVLRHRALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLL 881
Query: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQ-LEVKVPGIESIKE 119
Q WV + F + V+YK G N VADALSR++ L + P + I +
Sbjct: 882 DQRLATIPQHHWVGKLLGFDFAVEYKPGAANTVADALSRRDTEEGAILALSAPRFDFISK 941
Query: 120 LYPA---DLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCS-VRLLLLQETHAGG 175
L+ A D + + +AG + + D L + L +P S + +++ TH G
Sbjct: 942 LHDAQRQDPALTALRDEVSAGTRTGPWALVDDLLQYNSWLYIPPASPLAREIIEATHEDG 1001
Query: 176 LMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSK-LNPHGLYTPLPVPSAP 234
H G ++T L F+ P M++ VQ V+ C C + KS+ L+P GL PLPVP
Sbjct: 1002 ---HEGVKRTMHRLRREFHIPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGV 1058
Query: 235 WEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHG 294
W DI++DF+ LPR RG+ I VVDRFSK HFIP A +A FF+EIV LHG
Sbjct: 1059 WTDIALDFIEALPRV-RGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHG 1117
Query: 295 MPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKK 354
+P+++VSDRD F S FW+ L +GT+L +T HPQ+DGQ+E NR + M LR L
Sbjct: 1118 VPQSMVSDRDPIFTSTFWRELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGD 1177
Query: 355 NLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKXXXXXXXXXXXXQERSDMEASKHA 414
++W LP EF +N A S+ PF VVYG E D ++ A
Sbjct: 1178 RPRQWLRWLPWAEFIFNTAYQSSLRDTPFRVVYG------RDPPSIRSYEAGD---TRVA 1228
Query: 415 TYVKKIHEKTKEAIEKRSKYYAAWA------NKDRKKVTFEPGDLVWVHLRK---DRFPQ 465
K + E+ + + R + A A +K + V ++ GD + LR+ PQ
Sbjct: 1229 AVAKSMEERAEFLFDIRYRLEQAQAVQKLHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQ 1288
Query: 466 KRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVADLTPF 512
KL PR GP+R+ IND A ++ELP + F++ L F
Sbjct: 1289 SGTGKLKPRFYGPYRITELINDVAVRLELPAGARLHDVFHIGLLKKF 1335
>Os10g0317000 Retrotransposon gag protein family protein
Length = 1476
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 183/528 (34%), Positives = 260/528 (49%), Gaps = 26/528 (4%)
Query: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
+Q+ P+A+FS + + Y++EL LV A+ W+ YLW + FV+ +DH +LKYL
Sbjct: 843 LQDKHPLAFFSRPVAPRHRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLL 902
Query: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQ-LEVKVPGIESIKE 119
Q WV + F + V+YK G N+VADALSR++ L + P + I+
Sbjct: 903 DQRLATIPQHHWVGKLLGFDFTVEYKSGASNVVADALSRRDTDEGAVLALSAPRFDYIER 962
Query: 120 LYPADLDFSEPYA-----KCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRL-LLLQETHA 173
L A +EP AG + + DG + ++L +P S L +L H
Sbjct: 963 LRAAQT--TEPALVAIRDAIQAGTRSAPWALRDGMVMFDSRLYIPPSSPLLHEILAAIHT 1020
Query: 174 GGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSA 233
G H G ++T L F+ P MRR VQ V+ C TC + KS+ G
Sbjct: 1021 DG---HEGVQRTLHRLRRDFHSPAMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPT 1077
Query: 234 P-WEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRL 292
W DI +DFV LPR G+ I VVDRFSK HFIP A +A F+++IVRL
Sbjct: 1078 TVWADIGLDFVEALPRVG-GKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRL 1136
Query: 293 HGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALI 352
HG+P+++VSDRD F S FW+ L GT++ +T HPQ+DGQTE N+ + M LR
Sbjct: 1137 HGIPQSMVSDRDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFT 1196
Query: 353 KKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKXXXXXXXXXXXXQERSDMEASK 412
++W LP E+ YN A ++ PF VVYG + R A
Sbjct: 1197 GDRPRQWVRWLPWAEYIYNTAYQTSLRDTPFRVVYG--RDPPIIRSYEPGETRVAAVARS 1254
Query: 413 HA---TYVKKIHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLR---KDRFPQK 466
A ++ + + ++A KYY +K + V++E GDLV + LR PQ
Sbjct: 1255 MADRDEFLADVRYRLEQAQATHKKYY----DKGHRAVSYEVGDLVLLRLRHRAPASLPQV 1310
Query: 467 RKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVADLTPFFG 514
K KL PR GP+RV+ IN A ++ELP + F+V L F G
Sbjct: 1311 SKGKLKPRYFGPYRVVEVINPVAVRLELPPRAKLHDVFHVGLLKKFVG 1358
>Os08g0123950 Integrase, catalytic region domain containing protein
Length = 783
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 171/547 (31%), Positives = 272/547 (49%), Gaps = 40/547 (7%)
Query: 2 QNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKG 61
Q P+AY S+ LG S Y+KE A++ A++ W+ YL EF+I +DH +L +L
Sbjct: 120 QEKHPIAYISKALGPRTRGLSTYEKECLAMIMAVDHWRSYLQHVEFIILTDHHSLMHLSD 179
Query: 62 QAKLNRRHAKWVEFIET----FPYVVKYKKGKENIVADALSRK----NVLLNQLEVKVPG 113
Q R H W T Y + Y+KG N ADALSRK N + VP
Sbjct: 180 Q----RLHTPWQHKAFTKLLGLQYKICYRKGSTNAAADALSRKPQQSEEEFNAISQCVPQ 235
Query: 114 -IESIKELYPADLDFSEPYAKCTAGKGWE-KYHIHDGFL-FRANKLCVPHCSVRLLLLQE 170
+ + + Y D ++ A T + + + G L ++ N ++L ++ E
Sbjct: 236 WLMEVLQSYDTDPHATQLVAALTLNPNSKPHFSLQHGVLRYKGNIWIGNSPDLQLKIINE 295
Query: 171 THAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHG-LYTPLP 229
HA + GH G+ TY + F W M+ ++ + C C +AK + + L PLP
Sbjct: 296 MHASPVGGHSGFPVTYRRIKQLFAWNGMKSQIKETLANCQICAQAKPDRSRYPRLLQPLP 355
Query: 230 VPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEI 289
VP W+ IS+DF+ GLPR+ + I VVVD+FSK +HFIP A +A F S +
Sbjct: 356 VPKGAWQTISLDFIEGLPRSSH-YNCILVVVDKFSKYSHFIPLRHPFTAIDVAKAFMSNV 414
Query: 290 VRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLR 349
+LHG+P+ I+SDRD F S W+ L+ + GT+L +S+ HPQ+DGQTE N+ L + L+
Sbjct: 415 YKLHGLPQIIISDRDKIFTSQLWEQLFLRSGTKLHYSSAYHPQSDGQTERGNQCLEIYLK 474
Query: 350 ALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKXXXXXXXXXXXXQERSDME 409
++ +W L E+ YN + HST + PFE +YG+ D +
Sbjct: 475 CFVQSAPSKWPSWLHLAEYWYNNSYHSTIDRTPFEALYGYPPRHFGISIR-------DCD 527
Query: 410 ASKHATYV---KKIHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLRKDRFPQK 466
S+ T++ K + + ++ + + + +A+K R F+ G+ WV+L+ + Q
Sbjct: 528 NSELITWMQDRKLMQQLVQQHLHRAQQQMKLFADKKRSFRQFQVGE--WVYLKLQPYVQ- 584
Query: 467 RKSKLMPRGD--------GPFRVLSKINDNAYKIELPEDYGVSPTFNVADLTPFFGLEDS 518
S + PR + GPF++L K+ AYK++LP + P F+V+ L G + S
Sbjct: 585 --SSVAPRANHKLAFKYFGPFQILEKLGTVAYKLQLPATSSIHPVFHVSLLKEAKGFQPS 642
Query: 519 ESSRSTP 525
+ +P
Sbjct: 643 VHTPLSP 649
>Os04g0389000 Integrase, catalytic region domain containing protein
Length = 538
Score = 243 bits (619), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 159/460 (34%), Positives = 226/460 (49%), Gaps = 22/460 (4%)
Query: 83 VKYKKGKENIVADALSRKNV-LLNQLEVKVPGIESIKELY------PADLDFSEPYAKCT 135
V+YK G N+VADALSR++ L L + P EL P + AK +
Sbjct: 1 VEYKPGTTNVVADALSRRDEHLAEALALSAPQFSLFDELRHEVLTSPELTAIRDDIAKGS 60
Query: 136 AGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYW 195
W DG + ++ V S L + E G +GH G + T L F+
Sbjct: 61 KPPAWA---FTDGLITFKGRIFVSASSPSLPAILELAHG--LGHEGTQNTLSRLRADFHL 115
Query: 196 PKMRRDVQRLVQRCVTCHKAKSK-LNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRD 254
+ R VQ + C TC + K++ L P GL LPVPSA W DI+MDFV GLPR G+
Sbjct: 116 ARDRAVVQEHARACFTCQQNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVH-GKT 174
Query: 255 SIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKT 314
I VVDRFSK AHFIP A+ +A+ FFSEIVRLHG+P +IVSDRD F S FW+
Sbjct: 175 VILTVVDRFSKFAHFIPMAHPYTATSVAAAFFSEIVRLHGVPASIVSDRDPVFTSTFWRE 234
Query: 315 LWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAV 374
L+ G RL S+ HPQ+DGQ+EV N+ ++M LR L + W LP E+ YN +
Sbjct: 235 LFRLAGVRLNLSSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRHWLRWLPWAEYCYNTSY 294
Query: 375 HSTTNMCPFEVVYGFKXXXXXXXXXXXXQERSDMEASK-HATYVKKIHEKTKEAIEKRSK 433
S+ PF VVYG + + + +A + ++++I ++ ++A +
Sbjct: 295 QSSLRTSPFRVVYGREPPTLRAYEPGSTRLLAVQQAMQDRDEFLREIRDRLEQAQQTHKS 354
Query: 434 YYAAWANKDRKKVTFEPGDLVWVHLRKDRFPQ---KRKSKLMPRGDGPFRVLSKINDNAY 490
Y + + + F GD +W+ L + KL P+ G +RV +I AY
Sbjct: 355 AY----DGKHRALEFSVGDWLWLRLLHRPIASLGVTGRGKLGPKFYGLYRVAERIGSVAY 410
Query: 491 KIELPEDYGVSPTFNVADLTPFFGLEDSESSRSTPFQEGE 530
+++LP + F+V L PF G P Q G+
Sbjct: 411 RLQLPPGARLHDVFHVRLLKPFCGTPPDSVPPLPPIQHGQ 450
>Os06g0266100 Integrase, catalytic region domain containing protein
Length = 399
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 143/282 (50%), Gaps = 14/282 (4%)
Query: 243 VLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSD 302
+ GLPR+ + I VVVD+FSK HF+P A +A F I +LHG+P+TI+SD
Sbjct: 1 IEGLPRSS-SYNCILVVVDKFSKYGHFLPLSHPFTAIDVAKTFMLNIYKLHGLPQTIISD 59
Query: 303 RDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEEC 362
RD F S W+ L+ + GT+L ST HPQ+DGQTE VN+ L + LR +W
Sbjct: 60 RDKIFTSQLWEQLFTRSGTQLHLSTAYHPQSDGQTERVNQCLEIYLRCFTHATPSKWAVW 119
Query: 363 LPHVEFAYNRAVHSTTNMCPFEVVYGFKXXXXXXXXXXXXQERSDMEASKHATYVKK--- 419
L EF YN A HS N PFEV+YG D + ++K+
Sbjct: 120 LHLAEFWYNTAFHSALNTSPFEVLYGHPPRYFGI-------HSEDCAIPELQVWLKERRL 172
Query: 420 IHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLR---KDRFPQKRKSKLMPRGD 476
+H ++ + + ++ A+K R +FE GD V++ L+ + + KL R
Sbjct: 173 MHSLIQQHLNRAQQHMKNMADKKRSFRSFELGDWVYIKLQPYVQSSVAARANHKLAFRYF 232
Query: 477 GPFRVLSKINDNAYKIELPEDYGVSPTFNVADLTPFFGLEDS 518
GPF+V+ K AYK++LP + P F+V+ L G + +
Sbjct: 233 GPFQVIQKFGSVAYKLQLPTTSSIHPVFHVSQLKAAKGFQGA 274
>Os11g0224300 Integrase, catalytic region domain containing protein
Length = 383
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 148/283 (52%), Gaps = 25/283 (8%)
Query: 239 SMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKT 298
SMDF+ GLP+++ G D+I VVVD+FSK A FIP A +A+ F + + GMP+
Sbjct: 51 SMDFIEGLPKSE-GYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQV 109
Query: 299 IVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKE 358
I+SDRD F S W+ L+ +L S++ HPQTDGQTE +N+ L LR + K
Sbjct: 110 IISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKH 169
Query: 359 WEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKXX---------XXXXXXXXXXQERSDME 409
W + L V+ YN A HS + P+EV++ K QER+ M
Sbjct: 170 WSKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMN 229
Query: 410 ASKHATYVKKIHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLR---KDRFPQK 466
+ +H++ A ++R KY A+K R K F GD+V++ L+ + ++
Sbjct: 230 --------EVLHQQLTRA-QQRMKYQ---ADKHRSKRVFNVGDMVYLKLQPYVQMSVAKR 277
Query: 467 RKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVADL 509
KL R GP+++L +I + AYK++LP V P +V+ L
Sbjct: 278 SCQKLCFRYFGPYKILERIGEVAYKLDLPPQSQVHPVVHVSLL 320
>Os06g0713500 Integrase, catalytic region domain containing protein
Length = 248
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 118/229 (51%), Gaps = 17/229 (7%)
Query: 289 IVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLL 348
+ RLHGMPK I+SDRD F S FW+ L+ G +L S++ HPQ+DGQTE VN+ L + L
Sbjct: 4 VYRLHGMPKVIISDRDRIFTSQFWECLFTMAGIKLHMSSSYHPQSDGQTERVNQCLEIFL 63
Query: 349 RALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKXXXXXXXXXXXXQERSDM 408
R I ++W L EF Y + ST + PFEVVYG++ D
Sbjct: 64 RCFIHATPRKWAAWLYLAEFWYYSSYQSTVHKTPFEVVYGYQPSHFGISM-------EDC 116
Query: 409 EASKHATYV---KKIHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLR-----K 460
A ++ K +H ++ + + + +A+K+R F+ D WV+L+ K
Sbjct: 117 VVPDLAEWLSDRKFMHHLIQQHLHRAQQQMKFYADKNRSFREFQLQD--WVYLKVQPYVK 174
Query: 461 DRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVADL 509
++ KL R GPF++L K+ AYK++LP D + P +V+ L
Sbjct: 175 SSVAKRANHKLSFRYYGPFQILQKVGSVAYKLDLPPDCLIHPVVHVSQL 223
>Os04g0682600 Integrase, catalytic region domain containing protein
Length = 395
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 119/253 (47%), Gaps = 24/253 (9%)
Query: 269 FIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTT 328
F+P A +A LF I +HG+P+ IVSDRD F S WK L+ + GT+L S++
Sbjct: 31 FLPLKHPFTAFGVAQLFMEHIHSIHGLPQAIVSDRDRVFTSSLWKELFRRAGTQLRMSSS 90
Query: 329 CHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYG 388
HPQ+DGQTE VN+ + M LR + W+ L ++ YN + HS M PFEV++G
Sbjct: 91 YHPQSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFEVLFG 150
Query: 389 FKXXXXXXXXXXX---------XQERSDMEASKHATYVKKIHEKTKEAIEKRSKYYAAWA 439
K ER+DM H ++ +A KRS+
Sbjct: 151 HKPRYFGLSTSSVDAPGDLASWLSERNDMNTLIHHHLLRAQQRMKSQADSKRSER----- 205
Query: 440 NKDRKKVTFEPGDLVWVHLR---KDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPE 496
F GD V++ L+ + + KL + GPF+VL +I AY+++LP
Sbjct: 206 -------CFAVGDWVFMKLQPYIQQSVMTRSNRKLSFKYYGPFQVLQRIGLVAYRLQLPA 258
Query: 497 DYGVSPTFNVADL 509
+ P +V+ L
Sbjct: 259 HSLIHPVVHVSQL 271
>Os02g0522300 Hypothetical protein
Length = 136
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 92/137 (67%), Gaps = 13/137 (9%)
Query: 472 MPRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVADLTPFFGLEDSESSRSTPFQEGED 531
MPR DGPF+VL+KIN+NAYK++LP D+GVSPTF++A+L P+ G ED SR+TP QEGED
Sbjct: 1 MPRADGPFKVLAKINENAYKLDLPVDFGVSPTFHIANLKPYLGEEDELKSRTTPMQEGED 60
Query: 532 DEDIPTVHATSSTKQPSSNTKDTIQGPLTRSRAKKLQVQVNSFLTDFNFSTSENVILPKC 591
DEDI T+ ++S + + P+TR+RA++L QV+SFL S S +
Sbjct: 61 DEDINTIDTSTSPQV-------QLHDPITRARARQLNYQVSSFLN----SCSSCLYPGDA 109
Query: 592 STLVVLRNIQHEEDESG 608
TLV+LRN ED +G
Sbjct: 110 CTLVLLRN--DGEDPNG 124
>Os07g0510800 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 517
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 7/225 (3%)
Query: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
MQ G P+A+ S+ LG S+Y+KE A++ A++ W+ YL EFVI +D +L +L
Sbjct: 290 MQAGHPLAFLSKALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLG 349
Query: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSR----KNVLLNQLEVKVPG-IE 115
Q K + + Y + YK+G +N ADALSR ++ L V +P +
Sbjct: 350 DQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLT 409
Query: 116 SIKELYPADLDFSEPYAKCTA-GKGWEKYHIHDGFLFRANKLCVP-HCSVRLLLLQETHA 173
++E Y +D ++ +K T + + DG L NK+ + + +++ +L H+
Sbjct: 410 EVQEGYLSDPYSADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHS 469
Query: 174 GGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSK 218
G + GH G + TY + F W +++ V + +C C +AK++
Sbjct: 470 GAIGGHSGVQVTYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAE 514
>Os06g0513889
Length = 488
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 35/235 (14%)
Query: 7 VAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLN 66
+AY S+ L GAQLNY+ +KEL A+V A++ ++ YL + ++++DH ALKYL +
Sbjct: 223 IAYASKTLTGAQLNYATTEKELLAIVFAIDKFRSYLVGAKVIVYTDHAALKYLLPKKDSK 282
Query: 67 RRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV-----------LLNQLEVKVPGIE 115
RR +W+ ++ F +K KK EN +AD LSR + L + + +KV +
Sbjct: 283 RRLIRWILLLQEFDIEIKDKKRVENSIADHLSRMQITNMHELPINDYLRDDMLLKVIDSD 342
Query: 116 SIKELYPADLDF-----------SEPYAKCTAGKGWEKYHIH----DGFLFRANKLCVPH 160
S Y ++F + + G W +++ DG L R CVP
Sbjct: 343 S---WYATIVNFMVAGHVPPGENKKRLIYKSRGHLWYAPYLYRVCSDGLLRR----CVP- 394
Query: 161 CSVRLLLLQETHAGGLMGHFGWRKTY-DMLADHFYWPKMRRDVQRLVQRCVTCHK 214
+ ++++ HA GH+G +T+ + F+WP M D + V+RC +C K
Sbjct: 395 VDKGMKIIEKCHAAPYGGHYGAFRTHAKIWQSGFFWPTMYDDTKEFVRRCTSCQK 449
>Os06g0513835
Length = 715
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 148/346 (42%), Gaps = 49/346 (14%)
Query: 67 RRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV-----------LLNQLEVKVPGIE 115
RR +W+ ++ F +K KK EN +AD LSR + L + + +KV +
Sbjct: 239 RRLIRWILLLQEFDIEIKDKKRVENSIADHLSRMQITNMHELPINDYLRDDMLLKVIDSD 298
Query: 116 S-----IKELYPADLDFSEPYAKC---TAGKGWEKYHIH----DGFLFRANKLCVPHCSV 163
S + + L E + + G W+ +++ D L R CVP
Sbjct: 299 SWYATIVNFMVAGHLPPGENKKRLIYKSRGHLWDAPYLYRVCSDSLLRR----CVP-VDK 353
Query: 164 RLLLLQETHAGGLMGHFGWRKTY-DMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPH 222
+ ++++ HA GH+G +T+ + F+WP M D + V+RC +C K
Sbjct: 354 GMKIIKKCHAAPYGGHYGAFRTHAKIWQSGFFWPTMYDDTKEFVRRCTSCQKHGGITACD 413
Query: 223 GLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIA 282
+ + ++ ++F+ P++ + + V VD SK +PC ++ DA H
Sbjct: 414 AMPLTYNLQVELFDVWGINFMGPFPKSYDC-EYVLVAVDYVSKWVEAMPC-RAADAKHAR 471
Query: 283 SLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNR 342
+ S + D F ++ +LG + +T HPQT GQ E N+
Sbjct: 472 RMLGSHFI-------------DKTFRNFL-----QELGAQHNIATPYHPQTSGQAETSNK 513
Query: 343 TLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYG 388
+ +L+ + + K W+ LP +AY A + M P+++VYG
Sbjct: 514 QIKNILQKTVNEMGKAWKNKLPDALWAYRTAYKTPIGMSPYQLVYG 559
>Os04g0245300
Length = 619
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 28/229 (12%)
Query: 7 VAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLN 66
+ Y S+ L GAQLNY+ +KEL A+V A+E ++ YL + V+++DH ALKYL +
Sbjct: 352 ITYASKTLTGAQLNYATTEKELLAVVFAIEKFRSYLVGAKVVVYTDHAALKYLLTKKDAK 411
Query: 67 RRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV------LLNQL---EVKVPGIESI 117
R +W+ ++ F + KKG EN VAD LSR + L+N ++++ I+S
Sbjct: 412 PRVIRWILLLQEFDIEIMDKKGVENYVADHLSRMQITNMQKLLINDYLRDDMRLKVIDS- 470
Query: 118 KELYPADLDFSE----PYAKCTAGKGWE-KYHIHDG-FLFRAN-----KLCVPHCSVRLL 166
Y ++F P + +E + H+ D +LFR ++CV ++
Sbjct: 471 DPWYATIVNFMATGHVPPVENKKRLIYESRRHLWDAPYLFRVCSDGLLRICV-STDEGIM 529
Query: 167 LLQETHAGGLMGHFGWRKTYDML-ADHFYWPKMRRDVQRLVQRCVTCHK 214
++++ HA GH+G +T+ + F+WP M D +C C K
Sbjct: 530 IIEKCHAAPYGGHYGAFRTHAKIWQSGFFWPSMYDDT-----KCTRCQK 573
>Os08g0164800 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 620
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 64/102 (62%)
Query: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
MQ G+P+AY S+ LG S+Y+KE A++ AL+ W+HY+ + VI +D ++LKY+
Sbjct: 446 MQTGKPIAYLSKALGPKAAAQSIYEKEAMAILEALKKWRHYILGNKLVIKTDQQSLKYMM 505
Query: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV 102
Q + K + + + Y ++YK GKEN+VADALSR +
Sbjct: 506 NQRLVEGIQHKLLLKMMEYDYSIEYKAGKENLVADALSRGKI 547
>Os04g0134833
Length = 310
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 30 ALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGK 89
A++ AL+ W+HY+ + +I +D ++LKY+ Q + K + + + Y ++YK GK
Sbjct: 2 AILEALKKWRHYVLGSKLIIKTDQQSLKYMMKQRLVEGIQHKLLLKLMEYDYKIEYKAGK 61
Query: 90 ENIVADALSR------KNVLLNQLEVKVPG-IESIKELYPADLDFSEPYAKC-TAGKGWE 141
EN+VADALSR N + V +P I+ I+ Y D+ + + T
Sbjct: 62 ENVVADALSRLPQTEHDNEDCQAITVVIPEWIQDIQNSYEGDIQAHKMLSMIGTDSDPNR 121
Query: 142 KYHIHDGFLFRANKLCVPHC-SVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPKMRR 200
Y + G L ++ V S+R +LLQ+ H+ H G R TY + FYWP +++
Sbjct: 122 TYSLESGILRYKGRIYVGDSNSIRTILLQDYHSSAFGRHLGIRATYQRIKGLFYWPGLKK 181
Query: 201 DVQR 204
R
Sbjct: 182 KPYR 185
>Os06g0513700
Length = 414
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 35/219 (15%)
Query: 7 VAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLN 66
+AY S+ L GAQLNY+ +KEL A+V A++ ++ YL + ++++DH ALKYL +
Sbjct: 201 IAYASKTLTGAQLNYATTEKELLAIVFAIDKFRSYLVGAKVIVYTDHAALKYLLTKKDSK 260
Query: 67 RRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV-----------LLNQLEVKVPGIE 115
RR +W+ ++ F +K KK EN +AD LSR + L + + +KV +
Sbjct: 261 RRLIRWILLLQEFDIEIKDKKRVENSIADHLSRMQITNMHELPINDYLRDDMLLKVIDSD 320
Query: 116 SIKELYPADLDF-----------SEPYAKCTAGKGWEKYHIH----DGFLFRANKLCVPH 160
S Y ++F + + G W +++ DG L R CVP
Sbjct: 321 S---WYATIVNFMVAGHVPPGENKKRLIYKSRGHLWYAPYLYRVCSDGLLRR----CVP- 372
Query: 161 CSVRLLLLQETHAGGLMGHFGWRKTY-DMLADHFYWPKM 198
+ ++++ HA GH+G +T+ + F+WP+M
Sbjct: 373 VDKGMKIIEKCHAAPYGGHYGAFRTHAKIWQSGFFWPRM 411
>Os06g0471300
Length = 269
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 60/97 (61%)
Query: 6 PVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKL 65
+AY S+ L GAQLNY+ +KEL A+V A++ ++ YL + ++++DH ALKYL +
Sbjct: 114 AIAYASKTLTGAQLNYATTEKELLAIVFAIDKFRSYLVGAKVIVYTDHAALKYLLTKKDA 173
Query: 66 NRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV 102
+W+ ++ F +K KKG EN VAD LSR +
Sbjct: 174 KSWLIRWILLLQEFDIEIKDKKGVENSVADHLSRMQI 210
>Os11g0415300
Length = 299
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 60/96 (62%)
Query: 7 VAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLN 66
+AY S+ L GAQ+NY+ +KEL A+V A++ ++ YL + ++++DH ALKYL +
Sbjct: 24 IAYASKTLTGAQVNYATTEKELLAIVFAIDKFKSYLLGAKVIVYTDHPALKYLLCKKDAK 83
Query: 67 RRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV 102
R +W+ ++ F +K KKG EN VAD LS V
Sbjct: 84 PRLIRWILLLQEFDIEIKDKKGVENSVADHLSHMQV 119
>Os06g0541800
Length = 865
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 7 VAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLN 66
+ Y S+ L AQLNY+ +KEL +V A++ ++ YL + +I++DH ALKYL +
Sbjct: 659 ICYASKTLTRAQLNYATTEKELLTVVFAIDKFRSYLVGAKVIIYTDHAALKYLLTKKDAK 718
Query: 67 RRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV 102
R ++W+ ++ F +K KKG EN VAD LSR +
Sbjct: 719 PRLSRWILLLQEFDLEIKDKKGIENSVADHLSRLQI 754
>Os07g0302600
Length = 707
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%)
Query: 5 QPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAK 64
Q + Y S+ L GAQLNY+ +KEL +V A+ ++ YL + +I++D+ ALKYL +
Sbjct: 466 QAICYASKTLTGAQLNYATTEKELLVVVFAINKFRSYLVGAKVIIYTDNAALKYLLTKKD 525
Query: 65 LNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNV 102
R +W+ ++ F +K KKG EN V D LSR +
Sbjct: 526 AKPRLLRWILLLQEFDLEIKDKKGVENSVTDHLSRLQI 563
>Os04g0249300
Length = 351
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 7 VAYFSEKLGGAQLNYSVYDKELYALVRALETWQHY-LWPKEFVIHSDHEALKYLKGQAKL 65
+ Y SE L GAQ NY+ +KEL A+V A++ ++ L + +++++H ALKYL +
Sbjct: 54 ICYASETLAGAQSNYATTEKELLAVVFAIDKFRRSDLVGAKVIVYTEHAALKYLLTKKDA 113
Query: 66 NRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVPGIES-IKELYPAD 124
R +W+ ++ F +K KKG EN VAD LSR L ++ P I +++
Sbjct: 114 KPRLLRWIPLLQEFDLEIKDKKGVENSVADHLSR----LQLTNMQEPPINYFLQDDMLMA 169
Query: 125 LDFSEPYAKCTAGKGWEKY--------------HIH---DGFLFR--ANKL---CVPHCS 162
+ S+P+ KY H H + +L+R +N L CVP
Sbjct: 170 VRNSDPWYANIVNYMVSKYVPQGENQRKLKYESHCHIWDEPYLYRVCSNGLLRRCVPK-E 228
Query: 163 VRLLLLQETHAGGLMGHFG-WRKTYDMLADHFYWPKM 198
+++ HA GH+G +R + F+WP M
Sbjct: 229 EGFKIIERCHAAPYRGHYGAFRTQAKIWQSRFFWPTM 265
>Os08g0355201 Integrase, catalytic region domain containing protein
Length = 275
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 271 PCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCH 330
PC + DA H +F I G P+ ++SD + F+ ++ L ++G + +T H
Sbjct: 10 PC--AADARHAKKMFTETIFLRFGTPRMVISDGGSHFIDKTFRDLLREMGAKHNVATPYH 67
Query: 331 PQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYG 388
PQT GQ E +N+ + +++ +KK W++ L +AY + M P+++VYG
Sbjct: 68 PQTSGQAETLNKQIKNIMQKTVKKMGTGWKDRLSDALWAYRTVYKTPIGMSPYQIVYG 125
>Os01g0386800
Length = 857
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 7 VAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLN 66
+ Y S+ L GAQLNY+ +KEL A+V A++ ++ YL + +I++DH ALKYL +
Sbjct: 470 ICYASKTLTGAQLNYATTEKELLAVVFAIDKFRSYLVGAKVIIYTDHAALKYLLTKKDAK 529
Query: 67 RRHAKWVEFIETFPYVVKYKKGKENIVADALS 98
R +W+ ++ F +K KKG EN VAD LS
Sbjct: 530 LRLLRWILLLQEFDLEIKDKKGVENSVADHLS 561
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,706,861
Number of extensions: 946979
Number of successful extensions: 2404
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 2374
Number of HSP's successfully gapped: 25
Length of query: 681
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 573
Effective length of database: 11,396,689
Effective search space: 6530302797
Effective search space used: 6530302797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)