Os08g0164800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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Os08g0164800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38 | 0.29 | 10.1 | 1.1 | 1.02 | -0.92 | 0.826 | 1.15 | 0.532 | 21.2 | 21.8 | 14 | -- | -- |
| 38.91 | 0.293 | 10.1 | 0.902 | 1.02 | -0.855 | 0.662 | -- | 0.47 | 21.2 | 22.06 | 8 | -- | -- |
| 40.15 | 0.295 | 10.1 | 1.01 | 1.01 | -0.901 | -- | 0.697 | 0.503 | 21.2 | 22.01 | 9 | -- | -- |
| 40.41 | 0.296 | 10.1 | 0.879 | 1.01 | -0.834 | -- | -- | 0.468 | 21.2 | 22 | 2 | -- | -- |
| 96.87 | 0.461 | 10.1 | 1.08 | -- | -1.18 | -- | 0.899 | 0.556 | -- | 21.3 | 3 | -- | -- |
| 49.97 | 0.331 | 10.2 | 0.736 | 1.12 | -- | 0.615 | -- | 0.336 | 22.3 | -- | -- | -- | -- |
| 51.49 | 0.336 | 10.2 | 0.711 | 1.12 | -- | -- | -- | 0.334 | 22.3 | -- | -- | -- | -- |
| 97.25 | 0.459 | 10.1 | 0.935 | -- | -1.09 | -- | -- | 0.502 | -- | 20.6 | 2 | -- | -- |
| 59.42 | 0.359 | 10.2 | -- | 1.05 | -0.563 | -- | -- | 0.329 | 21.7 | 22.8 | 2 | -- | -- |
| 127.61 | 0.528 | 10.1 | 0.728 | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
| 64.81 | 0.377 | 10.2 | -- | 1.12 | -- | -- | -- | 0.255 | 22.4 | -- | -- | -- | -- |
| 119.8 | 0.51 | 10.1 | -- | -- | -0.936 | -- | -- | 0.385 | -- | 21.08 | 2 | -- | -- |
| 141.61 | 0.555 | 10.2 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 10 | 38.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 16 | 38.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 17 | 38.97 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 23 | 39.06 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 36 | 39.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 38 | 39.28 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 63 | 39.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 64 | 39.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 76 | 39.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 77 | 39.75 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 84 | 39.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 129 | 40.00 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 138 | 40.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 144 | 40.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 192 | 40.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 198 | 40.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 200 | 40.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 289 | 40.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 359 | 40.38 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 363 | 40.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 364 | 40.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 373 | 40.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 388 | 40.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 395 | 40.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 398 | 40.45 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 422 | 40.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 427 | 40.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 470 | 40.65 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 499 | 40.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 513 | 40.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 533 | 40.82 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 18 |
| 537 | 40.83 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 576 | 40.95 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 21 |
| 591 | 40.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 605 | 41.00 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 610 | 41.01 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 616 | 41.02 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 624 | 41.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 633 | 41.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 634 | 41.05 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 647 | 41.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 665 | 41.11 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 674 | 41.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 678 | 41.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 814 | 41.28 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 823 | 41.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 841 | 41.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 842 | 41.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 857 | 41.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 939 | 41.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |