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Os07g0510800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.81 (0.0181) R2 : 0.114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.291 (0.0381) R2dN8 : 0.147 R2N8 : 0.114
σ : 0.34
deviance : 53.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.22 0.267 9.84 -0.0105 0.5 0.361 0.588 -0.706 0.162 4.44 10.11 1379 -- --
33.06 0.268 9.83 0.0744 0.472 0.355 0.552 -- 0.194 4.4 10.29 1378 -- --
33.15 0.268 9.84 -0.0109 0.502 0.363 -- -0.645 0.161 4.46 10.11 1379 -- --
33.8 0.271 9.83 0.1 0.502 0.349 -- -- 0.202 4.47 10.12 1389 -- --
46.67 0.318 9.85 -0.00894 -- 0.399 -- -0.473 0.154 -- 10.35 1358 -- --
36.31 0.283 9.8 0.207 0.516 -- 0.591 -- 0.305 4.2 -- -- -- --
37.29 0.286 9.8 0.201 0.52 -- -- -- 0.302 4.19 -- -- -- --
47.06 0.319 9.83 0.0981 -- 0.364 -- -- 0.2 -- 11.23 1365 -- --
34.02 0.272 9.83 -- 0.503 0.349 -- -- 0.191 4.49 10.23 1378 -- --
51.9 0.337 9.81 0.222 -- -- -- -- 0.316 -- -- -- -- --
38.35 0.29 9.81 -- 0.523 -- -- -- 0.279 4.19 -- -- -- --
47.33 0.32 9.83 -- -- 0.383 -- -- 0.21 -- 10.3 1372 -- --
53.2 0.34 9.81 -- -- -- -- -- 0.291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.52 wind 3.0 90 < th dose dependent rect. 3 4
2 29.53 wind 5.0 10 < th dose dependent rect. 4 5
17 29.82 wind 1.0 270 < th dose independent rect. 4 1
22 29.92 wind 7.0 270 < th dose dependent rect. 3 2
24 29.96 temperature 25.0 270 < th dose independent rect. 3 2
28 29.98 temperature 10.0 270 > th dose dependent rect. 3 2
36 30.05 precipitation 0.1 270 < th dose independent rect. 3 2
37 30.05 temperature 15.0 270 > th dose independent rect. 24 23
38 30.05 precipitation 0.1 270 < th dose dependent rect. 3 2
40 30.12 wind 5.0 270 < th dose independent rect. 3 2
41 30.13 temperature 15.0 270 > th dose independent rect. 5 22
42 30.14 wind 9.0 270 < th dose independent rect. 5 22
45 30.18 temperature 25.0 270 < th dose independent rect. 1 5
48 30.21 wind 3.0 90 < th dose independent rect. 3 4
49 30.22 humidity 60.0 270 > th dose dependent rect. 3 2
51 30.24 temperature 15.0 90 > th dose dependent rect. 3 4
52 30.25 wind 1.0 270 < th dose dependent rect. 4 1
61 30.31 precipitation 0.1 270 < th dose independent rect. 5 22
63 30.31 precipitation 0.1 270 < th dose dependent rect. 5 22
71 30.40 temperature 10.0 270 > th dose independent rect. 3 2
74 30.40 humidity 50.0 270 > th dose independent rect. 3 2
77 30.40 atmosphere 995.0 270 > th dose independent rect. 3 2
78 30.40 atmosphere 1010.0 270 < th dose independent rect. 3 2
80 30.40 radiation 20.0 270 < th dose independent rect. 3 2
84 30.41 radiation 1.0 270 < th dose independent rect. 3 2
86 30.41 radiation 1.0 270 < th dose dependent rect. 3 2
92 30.42 wind 3.0 10 < th dose independent rect. 4 5
98 30.44 humidity 90.0 270 > th dose independent rect. 3 2
102 30.46 precipitation 0.1 90 < th dose independent rect. 3 4
103 30.46 precipitation 0.1 90 < th dose dependent rect. 3 4
104 30.47 precipitation 0.1 90 < th dose independent rect. 7 20
105 30.47 precipitation 0.1 90 < th dose dependent rect. 7 20
108 30.49 humidity 50.0 90 > th dose dependent rect. 3 4
113 30.51 atmosphere 995.0 10 > th dose dependent rect. 12 10
114 30.52 wind 5.0 270 < th dose independent rect. 1 5
119 30.54 wind 9.0 90 < th dose independent rect. 7 20
133 30.59 wind 9.0 90 < th dose dependent rect. 7 20
134 30.60 temperature 20.0 90 > th dose independent rect. 3 4
140 30.62 humidity 60.0 10 > th dose dependent rect. 4 3
142 30.62 humidity 50.0 10 > th dose dependent rect. 4 5
146 30.64 temperature 10.0 90 > th dose independent rect. 3 4
149 30.64 humidity 50.0 90 > th dose independent rect. 3 4
151 30.64 atmosphere 995.0 90 > th dose independent rect. 3 4
152 30.64 atmosphere 1015.0 90 < th dose independent rect. 3 4
153 30.64 radiation 30.0 90 < th dose independent rect. 3 4
155 30.64 temperature 10.0 90 > th dose independent rect. 7 20
156 30.64 temperature 15.0 10 > th dose dependent rect. 4 3
163 30.64 humidity 50.0 90 > th dose dependent rect. 3 6
174 30.67 humidity 90.0 270 > th dose independent rect. 1 5
208 30.72 humidity 50.0 270 > th dose dependent rect. 1 5
228 30.78 temperature 15.0 270 > th dose independent rect. 16 14
235 30.79 humidity 80.0 720 < th dose dependent rect. 19 3
251 30.83 precipitation 0.1 10 < th dose independent rect. 4 3
254 30.83 precipitation 0.1 10 < th dose dependent rect. 4 3
278 30.86 temperature 10.0 10 > th dose independent rect. 4 3
280 30.86 temperature 30.0 10 < th dose independent rect. 4 3
281 30.86 humidity 50.0 10 > th dose independent rect. 4 3
284 30.86 atmosphere 995.0 10 > th dose independent rect. 4 3
285 30.86 atmosphere 1015.0 10 < th dose independent rect. 4 3
286 30.86 radiation 20.0 10 < th dose independent rect. 4 3
291 30.86 wind 9.0 10 < th dose independent rect. 8 20
294 30.86 temperature 10.0 10 > th dose independent rect. 7 21
313 30.89 atmosphere 995.0 10 > th dose dependent rect. 22 6
324 30.90 temperature 10.0 270 > th dose independent rect. 1 5
327 30.90 humidity 50.0 270 > th dose independent rect. 1 5
330 30.90 atmosphere 995.0 270 > th dose independent rect. 1 5
331 30.90 atmosphere 1015.0 270 < th dose independent rect. 1 5
332 30.90 radiation 20.0 270 < th dose independent rect. 1 5
363 30.91 humidity 50.0 10 > th dose dependent rect. 22 6
417 30.96 radiation 40.0 270 < th dose dependent rect. 2 4
449 31.01 atmosphere 995.0 10 > th dose independent rect. 4 18
472 31.03 radiation 40.0 90 < th dose dependent rect. 3 6
510 31.07 humidity 80.0 720 < th dose independent rect. 19 2
518 31.07 atmosphere 1015.0 270 < th dose dependent rect. 3 2
537 31.09 temperature 15.0 270 > th dose independent rect. 11 10
541 31.09 wind 9.0 10 < th dose dependent rect. 22 6
543 31.09 humidity 70.0 10 > th dose dependent rect. 7 21
550 31.10 humidity 50.0 10 > th dose dependent rect. 7 21
559 31.12 wind 1.0 270 > th dose independent rect. 3 1
565 31.12 atmosphere 1015.0 10 < th dose dependent rect. 4 3
580 31.13 radiation 40.0 10 < th dose dependent rect. 4 3
587 31.14 wind 9.0 10 < th dose independent rect. 22 6
588 31.14 temperature 10.0 10 > th dose independent rect. 22 6
589 31.14 temperature 30.0 10 < th dose independent rect. 22 6
590 31.14 humidity 50.0 10 > th dose independent rect. 22 6
593 31.14 atmosphere 995.0 10 > th dose independent rect. 22 6
594 31.14 radiation 1.0 10 < th dose independent rect. 22 6
599 31.14 temperature 10.0 10 > th dose independent rect. 4 18
601 31.14 atmosphere 1015.0 10 < th dose independent rect. 4 18
604 31.14 radiation 1.0 10 < th dose dependent rect. 22 6
659 31.17 temperature 15.0 1440 > th dose independent rect. 13 10
663 31.17 radiation 40.0 10 < th dose dependent rect. 4 5
705 31.22 precipitation 0.1 10 < th dose independent rect. 4 18
709 31.22 precipitation 0.1 10 < th dose dependent rect. 4 18
720 31.23 humidity 80.0 720 < th dose dependent rect. 18 14
733 31.24 wind 9.0 10 < th dose independent rect. 4 18
743 31.24 humidity 50.0 10 > th dose dependent rect. 9 19
783 31.28 humidity 80.0 90 > th dose independent rect. 22 5
845 31.35 humidity 50.0 43200 > th dose independent rect. 23 5
854 31.36 atmosphere 1000.0 10 > th dose independent rect. 12 10
857 31.36 atmosphere 995.0 270 > th dose independent rect. 1 20
868 31.37 temperature 30.0 720 > th dose dependent rect. 18 1
894 31.39 atmosphere 995.0 270 > th dose independent rect. 11 10
896 31.39 humidity 50.0 10 > th dose independent rect. 7 21
919 31.42 atmosphere 995.0 270 > th dose independent rect. 15 15
944 31.44 humidity 50.0 270 > th dose independent rect. 6 19
957 31.45 precipitation 0.1 30 < th dose independent rect. 22 6
958 31.45 humidity 80.0 270 > th dose independent rect. 6 19
967 31.45 precipitation 0.1 30 < th dose dependent rect. 22 6