BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0510800 Os07g0510800|AK058358
         (517 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1  | chrM:235916-236392 FORWARD LENGTH=159              135   7e-32

>ATMG00860.1 | chrM:235916-236392 FORWARD LENGTH=159
          Length = 158

 Score =  135 bits (339), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 3/129 (2%)

Query: 148 LRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGH--VISHAGVSTDPKNILAVQRWPVPTNV 205
           L  V Q+  +HQ    R KC+F Q  + YLGH  +IS  GVS DP  + A+  WP P N 
Sbjct: 4   LGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNT 63

Query: 206 KEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNVVFVWTISHQQAFEALKSALTSAPVL 265
            E+RGFLGL GYYR+FV+++G I RPLT+LLKKN +  WT     AF+ALK A+T+ PVL
Sbjct: 64  TELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSL-KWTEMAALAFKALKGAVTTLPVL 122

Query: 266 AIPDFSKPF 274
           A+PD   PF
Sbjct: 123 ALPDLKLPF 131



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,501,764
Number of extensions: 422424
Number of successful extensions: 851
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 414
Effective length of database: 8,282,721
Effective search space: 3429046494
Effective search space used: 3429046494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)