BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0510800 Os07g0510800|AK058358
(517 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0510800 RNA-directed DNA polymerase (Reverse transcrip... 1036 0.0
Os06g0493000 RNA-directed DNA polymerase (Reverse transcrip... 549 e-156
Os10g0317000 Retrotransposon gag protein family protein 481 e-136
Os04g0191000 Retrotransposon gag protein family protein 455 e-128
Os08g0164800 RNA-directed DNA polymerase (Reverse transcrip... 454 e-128
Os08g0123950 Integrase, catalytic region domain containing ... 423 e-118
Os08g0451600 Peptidase aspartic, catalytic domain containin... 412 e-115
Os12g0121200 Peptidase aspartic, catalytic domain containin... 214 2e-55
Os08g0273000 RNA-directed DNA polymerase (Reverse transcrip... 142 9e-34
Os11g0617500 RNA-directed DNA polymerase (Reverse transcrip... 140 2e-33
Os04g0134833 137 2e-32
Os01g0758700 Conserved hypothetical protein 125 8e-29
Os06g0513889 101 1e-21
Os09g0491900 Integrase, catalytic region domain containing ... 101 2e-21
Os07g0302600 99 5e-21
Os02g0298600 Similar to Reverse transcriptase (Fragment) 92 1e-18
Os06g0513700 90 3e-18
Os06g0471300 83 4e-16
Os11g0415300 65 9e-11
>Os07g0510800 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 517
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/517 (97%), Positives = 503/517 (97%)
Query: 1 MLRQGVIQXXXXXXXXXXXXXXKKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG 60
MLRQGVIQ KKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG
Sbjct: 1 MLRQGVIQPSSSPFSSPVLLVLKKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG 60
Query: 61 ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS 120
ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS
Sbjct: 61 ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS 120
Query: 121 PLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHV 180
PLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHV
Sbjct: 121 PLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHV 180
Query: 181 ISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNV 240
ISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNV
Sbjct: 181 ISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNV 240
Query: 241 VFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLS 300
VFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLS
Sbjct: 241 VFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLS 300
Query: 301 KALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQK 360
KALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQK
Sbjct: 301 KALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQK 360
Query: 361 AMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLTEVQEGYLSDPY 420
AMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLTEVQEGYLSDPY
Sbjct: 361 AMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLTEVQEGYLSDPY 420
Query: 421 SADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGHSGVQV 480
SADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGHSGVQV
Sbjct: 421 SADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGHSGVQV 480
Query: 481 TYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAERVH 517
TYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAERVH
Sbjct: 481 TYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAERVH 517
>Os06g0493000 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 866
Score = 549 bits (1415), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/492 (53%), Positives = 347/492 (70%), Gaps = 4/492 (0%)
Query: 23 KKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAGATIFTSLDLRAGYHKIRMRPED 82
KKD TWR C+DYR LNA T+KN+YP+PVI++LLD+L GA IF+ +DLR+GYH+IRM D
Sbjct: 13 KKDGTWRLCVDYRQLNASTIKNKYPIPVIEDLLDELQGAQIFSKIDLRSGYHQIRMHAAD 72
Query: 83 EHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLSPLLRKGVLVFIDDILIYSATLT 142
HKTAF TH GH+E+ VM +GLT APATFQ +MN +L+P LRK VLVF DDILIYS + T
Sbjct: 73 VHKTAFSTHLGHFEYLVMPFGLTNAPATFQALMNKILAPYLRKFVLVFFDDILIYSKSAT 132
Query: 143 EHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHVISHAGVSTDPKNILAVQRWPVP 202
EH Q L V QLL HQL K SKC F Q + YLG++IS +GV+TDP + AVQ WP P
Sbjct: 133 EHAQHLSLVLQLLRHHQLFAKPSKCVFGQDQVEYLGYIISSSGVATDPVKVQAVQNWPTP 192
Query: 203 TNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNVVFVWTISHQQAFEALKSALTSA 262
T++ E+RGFLGLAGYYR+F+++FG+I RP+ D LKKN F W QQAF+A+K L A
Sbjct: 193 TSITELRGFLGLAGYYRRFIKNFGIICRPMFDALKKN-NFHWQEVQQQAFDAIKLQLAQA 251
Query: 263 PVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLSKALGPRNRGLSIYEKECLAILL 322
PVLA+PDFS PF +E DAS G+GAVLMQ G PLA+LSKA+GP+ LS Y+KE LAIL
Sbjct: 252 PVLAMPDFSLPFILEADASGHGIGAVLMQNGRPLAYLSKAIGPKAAALSTYDKEALAILE 311
Query: 323 AVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRA 382
A+ +W+ Y +IRTDQ SL ++ +Q++ Q K + KLL +Y++ YK+G +N+A
Sbjct: 312 ALKKWKHYFLGTSLIIRTDQASLKYINEQRITEGVQHKLLIKLLSYDYKIEYKKGQENKA 371
Query: 383 ADALSRCSTDDHIQACALSVCIPDWLTEVQEGYLSDPYSADLLSKVTLQASAVPNFSLRD 442
ADALSR + A +V +P W+TEV Y +DP +L S + + + P ++L+
Sbjct: 372 ADALSRM---QQLNALTTTVIVPQWITEVAASYSTDPKCHELESHLHIAPQSHPPYTLKG 428
Query: 443 GILHYKNKIWIGNNTTLQHRILSALHSGAIGGHSGVQVTYSRIKKLFAWQGLKKSVLEFI 502
GIL YK+ I +G TL+ ++L + H A+GGHSG + TY R+K+LF W G+K +V +F+
Sbjct: 429 GILRYKDHIVVGAGNTLREQLLVSFHDSALGGHSGERATYQRMKQLFYWPGMKLAVTQFV 488
Query: 503 DQCSVCKQAKAE 514
C VC++ K E
Sbjct: 489 KACPVCQKNKTE 500
>Os10g0317000 Retrotransposon gag protein family protein
Length = 1476
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/514 (48%), Positives = 335/514 (65%), Gaps = 6/514 (1%)
Query: 1 MLRQGVIQXXXXXXXXXXXXXXKKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG 60
M+ QG+I+ K D +WRFC+DYR LNAIT+K+ YP+PV+DELLD+L G
Sbjct: 555 MMEQGLIRRSTSAFSSPVLLVKKADGSWRFCVDYRALNAITIKDAYPIPVVDELLDELHG 614
Query: 61 ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS 120
A FT LDLR+GYH++RMR ED KTAF+TH G YEF VM +GL APATFQ +MN +L
Sbjct: 615 AKFFTKLDLRSGYHQVRMRAEDVAKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDILR 674
Query: 121 PLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHV 180
LR+ VLVF DDILIYS T +H++ +R V LL +H+L VKRSKC+F SS+ YLGH+
Sbjct: 675 IYLRRFVLVFFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSKCAFGVSSISYLGHI 734
Query: 181 ISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNV 240
I GVS DP + AV WP P + + VRGFLGLAGYYRKFV +G I+ PLT L KK
Sbjct: 735 IGATGVSMDPAKVQAVVDWPQPRSARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKKE- 793
Query: 241 VFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLS 300
F W+ AF ALK A+T+APVLA+PDF KPF +E DAS G GAVL+Q HPLAF S
Sbjct: 794 GFRWSDEVATAFHALKHAVTTAPVLALPDFVKPFVVECDASTHGFGAVLLQDKHPLAFFS 853
Query: 301 KALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQK 360
+ + PR+R L+ YE+E + ++LA+ WR YL FV+RTD SL +L DQ+LAT Q
Sbjct: 854 RPVAPRHRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLLDQRLATIPQHH 913
Query: 361 AMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLTEVQEGYLSDPY 420
+ KLLG ++ + YK G N ADALSR TD+ ALS D++ ++ ++P
Sbjct: 914 WVGKLLGFDFTVEYKSGASNVVADALSRRDTDEG-AVLALSAPRFDYIERLRAAQTTEPA 972
Query: 421 SADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGHSGVQV 480
+ + + P ++LRDG++ + ++++I ++ L H IL+A+H+ GH GVQ
Sbjct: 973 LVAIRDAIQAGTRSAP-WALRDGMVMFDSRLYIPPSSPLLHEILAAIHT---DGHEGVQR 1028
Query: 481 TYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAE 514
T R+++ F +++ V EF+ C C++ K+E
Sbjct: 1029 TLHRLRRDFHSPAMRRVVQEFVRACDTCQRNKSE 1062
>Os04g0191000 Retrotransposon gag protein family protein
Length = 1463
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/514 (47%), Positives = 335/514 (65%), Gaps = 10/514 (1%)
Query: 1 MLRQGVIQXXXXXXXXXXXXXXKKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG 60
M+ QGV++ K D +WRFC+DYR LNA+TVK+ +P+PV+DEL G
Sbjct: 538 MIEQGVVRRSDSPFSSPVLLVKKADGSWRFCVDYRALNALTVKDAFPIPVVDEL----HG 593
Query: 61 ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS 120
A FT LDLR+GYH++RMRPED HKTAF+TH G YEF VM +GL APATFQ +MN VL
Sbjct: 594 ARFFTKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLR 653
Query: 121 PLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHV 180
P LR+ VLVF DDILIYS T T+H++ LR V +L +H+L VKRSKC+F S+ YLGHV
Sbjct: 654 PFLRRFVLVFFDDILIYSETWTDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVSYLGHV 713
Query: 181 ISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNV 240
IS AGV+ DP + A+ W VP + + VR FLGLAGYYRKFV ++G I+ PLT L KK+
Sbjct: 714 ISEAGVAMDPAKVQAIHEWLVPRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTALTKKD- 772
Query: 241 VFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLS 300
F WT AF+ALK+A+TSAPVLA+PDF+KPF +E DAS G GAVL+Q GHP+AF S
Sbjct: 773 GFSWTEDTAAAFDALKAAVTSAPVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPVAFFS 832
Query: 301 KALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQK 360
+ + R+R L+ YE+E + ++ AV WR YL FV++TD SL +L DQ+LAT Q
Sbjct: 833 RPVVLRHRALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQHH 892
Query: 361 AMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLTEVQEGYLSDPY 420
+ KLLG ++ + YK G N ADALSR T++ ALS D+++++ + DP
Sbjct: 893 WVGKLLGFDFAVEYKPGAANTVADALSRRDTEEG-AILALSAPRFDFISKLHDAQRQDPA 951
Query: 421 SADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGHSGVQV 480
L +V+ P ++L D +L Y + ++I + L I+ A H GH GV+
Sbjct: 952 LTALRDEVSAGTRTGP-WALVDDLLQYNSWLYIPPASPLAREIIEATHE---DGHEGVKR 1007
Query: 481 TYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAE 514
T R+++ F +K+ V +++ C+VC++ K+E
Sbjct: 1008 TMHRLRREFHIPNMKQLVQDWVRSCAVCQRYKSE 1041
>Os08g0164800 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 620
Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust.
Identities = 210/442 (47%), Positives = 307/442 (69%), Gaps = 4/442 (0%)
Query: 23 KKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAGATIFTSLDLRAGYHKIRMRPED 82
KKD +WR C+DYR LN T+KN++P+P+I++LLD+L G+ +F+ LDLR+GYH+IRM P+D
Sbjct: 180 KKDGSWRLCVDYRQLNGQTIKNKFPMPIIEDLLDELHGSRVFSKLDLRSGYHQIRMHPDD 239
Query: 83 EHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLSPLLRKGVLVFIDDILIYSATLT 142
HKTAF+TH GHYE+ VM +GLT APATFQ +MN VL+P LRK VLVF DDILIYS
Sbjct: 240 VHKTAFRTHLGHYEYNVMPFGLTNAPATFQALMNQVLAPYLRKFVLVFFDDILIYSKNKE 299
Query: 143 EHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHVISHAGVSTDPKNILAVQRWPVP 202
EH++ ++ V Q L ++ L +K KC F + YLGH+IS GV+TDP+ + ++R +P
Sbjct: 300 EHLEHIKLVMQALLDNHLVIKLKKCEFGLDRIAYLGHIISSEGVATDPEKVEGIRRRKIP 359
Query: 203 TNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNVVFVWTISHQQAFEALKSALTSA 262
N+ E+R FLG+AGYYR+F++ +GVI RPL D+L+K+ F W AFE LK L+++
Sbjct: 360 NNITELREFLGMAGYYRRFIKGYGVICRPLHDMLRKD-AFQWGPEQTTAFEELKLRLSTS 418
Query: 263 PVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLSKALGPRNRGLSIYEKECLAILL 322
PVL +PDFS+PF IE DA + G+GAVLMQ G P+A+LSKALGP+ SIYEKE +AIL
Sbjct: 419 PVLTMPDFSQPFVIEADACNTGIGAVLMQTGKPIAYLSKALGPKAAAQSIYEKEAMAILE 478
Query: 323 AVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRA 382
A+ +WR Y+ + VI+TDQ+SL ++ +Q+L Q K + K++ +Y + YK G +N
Sbjct: 479 ALKKWRHYILGNKLVIKTDQQSLKYMMNQRLVEGIQHKLLLKMMEYDYSIEYKAGKENLV 538
Query: 383 ADALSRCSTDDHI--QAC-ALSVCIPDWLTEVQEGYLSDPYSADLLSKVTLQASAVPNFS 439
ADALSR + + ++C A++V IP+W+T+++ Y D + ++S + +
Sbjct: 539 ADALSRGKISEAVPAESCQAITVVIPEWVTDIKRSYEGDVLAHKIISLIGTDMDPEQLYK 598
Query: 440 LRDGILHYKNKIWIGNNTTLQH 461
G+L YK +I++G+ + ++
Sbjct: 599 EESGLLKYKGRIYVGSVSDIRQ 620
>Os08g0123950 Integrase, catalytic region domain containing protein
Length = 783
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 193/344 (56%), Positives = 255/344 (74%)
Query: 172 SSLIYLGHVISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRP 231
S L YLGH+I GV+TDP+ + + W +PTNVK++RGFLGLAGYYRKFV+ FG+ S+P
Sbjct: 1 SQLSYLGHIIGANGVATDPQKVQDILNWEIPTNVKKLRGFLGLAGYYRKFVQGFGLKSKP 60
Query: 232 LTDLLKKNVVFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQ 291
LT+LL+K V FVW+ AF+ALK++L SAPVLA+P+F K F +ETDASD G+GAVL Q
Sbjct: 61 LTNLLRKGVPFVWSTEADSAFQALKTSLASAPVLALPNFQKTFVVETDASDYGIGAVLSQ 120
Query: 292 AGHPLAFLSKALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLGDQ 351
HP+A++SKALGPR RGLS YEKECLA+++AVD WRSYLQ EF+I TD SL+HL DQ
Sbjct: 121 EKHPIAYISKALGPRTRGLSTYEKECLAMIMAVDHWRSYLQHVEFIILTDHHSLMHLSDQ 180
Query: 352 KLATPWQQKAMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLTEV 411
+L TPWQ KA TKLLGL Y++ Y++G N AADALSR + A+S C+P WL EV
Sbjct: 181 RLHTPWQHKAFTKLLGLQYKICYRKGSTNAAADALSRKPQQSEEEFNAISQCVPQWLMEV 240
Query: 412 QEGYLSDPYSADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGA 471
+ Y +DP++ L++ +TL ++ P+FSL+ G+L YK IWIGN+ LQ +I++ +H+
Sbjct: 241 LQSYDTDPHATQLVAALTLNPNSKPHFSLQHGVLRYKGNIWIGNSPDLQLKIINEMHASP 300
Query: 472 IGGHSGVQVTYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAER 515
+GGHSG VTY RIK+LFAW G+K + E + C +C QAK +R
Sbjct: 301 VGGHSGFPVTYRRIKQLFAWNGMKSQIKETLANCQICAQAKPDR 344
>Os08g0451600 Peptidase aspartic, catalytic domain containing protein
Length = 707
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/331 (58%), Positives = 248/331 (74%), Gaps = 1/331 (0%)
Query: 1 MLRQGVIQXXXXXXXXXXXXXXKKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG 60
M+ G+I KKD TWRFC+DYR LN+ITVK+++P+P++DELLD+LAG
Sbjct: 378 MIDSGLITPSMSPFASPVLLVKKKDGTWRFCVDYRKLNSITVKSKFPMPIVDELLDELAG 437
Query: 61 ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS 120
F+ LDL+AGYH+I M +DE+KTAFKTHHG ++F VM +GLT AP+TFQ VMN+V +
Sbjct: 438 TRFFSKLDLKAGYHQIWMVEDDEYKTAFKTHHGQFQFHVMPFGLTNAPSTFQCVMNSVFA 497
Query: 121 PLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHV 180
PL+RK VLVF+DDIL+YS L H+ L+QVF+LL +H+L KRSKCSFA S L YLGH+
Sbjct: 498 PLIRKYVLVFMDDILVYSPDLPSHLTHLKQVFELLRQHKLYAKRSKCSFACSQLEYLGHI 557
Query: 181 ISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKNV 240
IS GVSTDP A+ WPVP NV E+RGFLGL GYYRKFV+++ ++++PLT LL+K
Sbjct: 558 ISDQGVSTDPTKTAAMLAWPVPANVTELRGFLGLTGYYRKFVKNYSILAKPLTVLLQKK- 616
Query: 241 VFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQAGHPLAFLS 300
F W+ QQAF+ LK A++S PVLA+PDFS+PF +ETDA GVGAVL Q HP+A+ S
Sbjct: 617 AFQWSDDAQQAFQKLKLAMSSTPVLALPDFSQPFILETDACAFGVGAVLSQHNHPIAYYS 676
Query: 301 KALGPRNRGLSIYEKECLAILLAVDRWRSYL 331
K LG N+ LSIYEKE L I++AVD+WR YL
Sbjct: 677 KTLGVANQKLSIYEKEFLVIMMAVDKWRCYL 707
>Os12g0121200 Peptidase aspartic, catalytic domain containing protein
Length = 461
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 132/187 (70%)
Query: 1 MLRQGVIQXXXXXXXXXXXXXXKKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG 60
MLR GVI+ K+D +WRFC+DYR LN T+K+++P+PV +EL D+L G
Sbjct: 200 MLRHGVIRPSSSAFSSPALLIKKRDGSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRG 259
Query: 61 ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS 120
A FT LD+R+GYH++ M P+D HKTAF+TH G +EF VM +GLT APATFQ +MN VL
Sbjct: 260 AKFFTKLDMRSGYHQVLMHPDDVHKTAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLL 319
Query: 121 PLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGHV 180
P LR+ VLVF DDILIYS++ +EH++ +R V Q L +H L +KRSKC F +S+ YLGHV
Sbjct: 320 PFLRRFVLVFFDDILIYSSSWSEHLRHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHV 379
Query: 181 ISHAGVS 187
+S S
Sbjct: 380 LSSPSTS 386
>Os08g0273000 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 211
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 1 MLRQGVIQXXXXXXXXXXXXXXKKDLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLAG 60
ML QG+I+ K +WR CIDYR LNAITVKN YP+PV+DEL G
Sbjct: 80 MLTQGLIRCSTLAFSSPVLLIKKDVGSWRCCIDYRALNAITVKNAYPIPVVDEL----HG 135
Query: 61 ATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVLS 120
A FT LDL +GYH++RM D KTAF+TH G YEF VM +GL P TFQ +MN VL
Sbjct: 136 ARFFTKLDLCSGYHQVRMNAADVTKTAFRTHDGLYEFMVMPFGLCNTPTTFQALMNDVLR 195
Query: 121 PLLRKGVLVFIDDILI 136
LR VL+F DDILI
Sbjct: 196 TFLRLFVLIFFDDILI 211
>Os11g0617500 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 627
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 162/344 (47%), Gaps = 7/344 (2%)
Query: 1 MLRQGVIQXXXXXXXXXXXXXXKK-DLTWRFCIDYRHLNAITVKNRYPLPVIDELLDDLA 59
+L+ GVIQ +K + WR C+D+ LN K+ + LP ID+L+D A
Sbjct: 85 LLKAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFLLPRIDQLVDLTA 144
Query: 60 GATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGLTGAPATFQGVMNTVL 119
+ + LD +GYH+I M P D KTAF T G + M +GL A ATF ++ VL
Sbjct: 145 SCELMSFLDAYSGYHQIHMNPADIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVL 204
Query: 120 SPLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKRSKCSFAQSSLIYLGH 179
L + V ++DD+++ S +H L++ F L K+ KC F + LG
Sbjct: 205 YKQLGRNVEAYVDDVVVKSRKAFDHASDLQETFDNLRAAGTKLNPEKCVFGVRAGKLLGF 264
Query: 180 VISHAGVSTDPKNILAVQRWPVPTNVKEVRGFLGLAGYYRKFVRHFGVISRPLTDLLKKN 239
++S G+ +P+ I A+Q+ P +V+EV+ G +F+ P L+
Sbjct: 265 LVSERGIEANPEKIDAIQQMKPPLSVREVQKLAGRIAALNRFLSKAAERGLPFFKTLRGV 324
Query: 240 VVFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVGAVLMQ----AGHP 295
F WT Q AF LK L S P L + AS V A L+Q P
Sbjct: 325 EKFHWTPECQAAFGELKQYLQSPPALISLAPGSELLLYLAASPVAVSAALVQEIDSGQKP 384
Query: 296 LAFLSKAL-GPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVI 338
+ F+SKAL G + R + + EK A+++A + + Y Q + ++
Sbjct: 385 VYFISKALQGAKTRYIEM-EKLAYALVMASCKLKHYFQTHKVIV 427
>Os04g0134833
Length = 310
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 111/181 (61%), Gaps = 2/181 (1%)
Query: 318 LAILLAVDRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRG 377
+AIL A+ +WR Y+ + +I+TDQ+SL ++ Q+L Q K + KL+ +Y++ YK G
Sbjct: 1 MAILEALKKWRHYVLGSKLIIKTDQQSLKYMMKQRLVEGIQHKLLLKLMEYDYKIEYKAG 60
Query: 378 LDNRAADALSRCSTDDH-IQAC-ALSVCIPDWLTEVQEGYLSDPYSADLLSKVTLQASAV 435
+N ADALSR +H + C A++V IP+W+ ++Q Y D + +LS + +
Sbjct: 61 KENVVADALSRLPQTEHDNEDCQAITVVIPEWIQDIQNSYEGDIQAHKMLSMIGTDSDPN 120
Query: 436 PNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGHSGVQVTYSRIKKLFAWQGLK 495
+SL GIL YK +I++G++ +++ +L HS A G H G++ TY RIK LF W GLK
Sbjct: 121 RTYSLESGILRYKGRIYVGDSNSIRTILLQDYHSSAFGRHLGIRATYQRIKGLFYWPGLK 180
Query: 496 K 496
K
Sbjct: 181 K 181
>Os01g0758700 Conserved hypothetical protein
Length = 135
Score = 125 bits (314), Expect = 8e-29, Method: Composition-based stats.
Identities = 48/101 (47%), Positives = 79/101 (78%)
Query: 416 LSDPYSADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGH 475
+SDP ++ + + + +AVP+F+L+DG+L++KN +WIGNN +Q +IL+ LH+ +GGH
Sbjct: 1 MSDPEASSKVQTLCISPAAVPDFTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGH 60
Query: 476 SGVQVTYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAERV 516
SG+ VTY R+K+LFAW L+ +V++F++ CS+C+QAK+E V
Sbjct: 61 SGIHVTYQRVKQLFAWPHLRSTVMQFVNSCSICQQAKSEHV 101
>Os06g0513889
Length = 488
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 27/305 (8%)
Query: 229 SRPLTDLLKKNVVFVWTISH---QQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGV 285
R L +K++V W H ++F+ L +L SAP++ PD+S PFEI DASD V
Sbjct: 149 DRVLQRCQEKDLVLNWEKCHFMCMKSFKILNESLISAPIIQPPDWSLPFEIMCDASDFAV 208
Query: 286 GAVLMQAG----HPLAFLSKALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTD 341
GAVL Q H +A+ SK L + EKE LAI+ A+D++RSYL + ++ TD
Sbjct: 209 GAVLGQTKDRKHHAIAYASKTLTGAQLNYATTEKELLAIVFAIDKFRSYLVGAKVIVYTD 268
Query: 342 QRSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALS 401
+L +L +K + + + L + + K+ ++N AD LSR + +
Sbjct: 269 HAALKYLLPKKDSKRRLIRWILLLQEFDIEIKDKKRVENSIADHLSRMQITNMHELPIND 328
Query: 402 VCIPDWLTEVQEGYLSDPYSADLLSKVTLQASAVPNFSLRDGILHYKNKIW-------IG 454
D L +V + SD + A +++ + P + + I + +W +
Sbjct: 329 YLRDDMLLKVID---SDSWYATIVN-FMVAGHVPPGENKKRLIYKSRGHLWYAPYLYRVC 384
Query: 455 NNTTLQH--------RILSALHSGAIGGHSGVQVTYSRI-KKLFAWQGLKKSVLEFIDQC 505
++ L+ +I+ H+ GGH G T+++I + F W + EF+ +C
Sbjct: 385 SDGLLRRCVPVDKGMKIIEKCHAAPYGGHYGAFRTHAKIWQSGFFWPTMYDDTKEFVRRC 444
Query: 506 SVCKQ 510
+ C++
Sbjct: 445 TSCQK 449
>Os09g0491900 Integrase, catalytic region domain containing protein
Length = 681
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 7/225 (3%)
Query: 290 MQAGHPLAFLSKALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQRSLIHLG 349
MQ G P+A+ S+ LG S+Y+KE A++ A++ W+ YL EFVI +D +L +L
Sbjct: 1 MQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLK 60
Query: 350 DQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSVCIPDWLT 409
Q K + + Y + YK+G +N ADALSR ++ L V +P +
Sbjct: 61 GQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSR----KNVLLNQLEVKVPG-IE 115
Query: 410 EVQEGYLSDPYSADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHS 469
++E Y +D ++ +K T + + DG L NK+ + + +++ +L H+
Sbjct: 116 SIKELYPADLDFSEPYAKCT-AGKGWEKYHIHDGFLFRANKLCVP-HCSVRLLLLQETHA 173
Query: 470 GAIGGHSGVQVTYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAE 514
G + GH G + TY + F W +++ V + +C C +AK++
Sbjct: 174 GGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSK 218
>Os07g0302600
Length = 707
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 225 FGVISRPLTDLLKKNVVFVWTISHQQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKG 284
F I+RPLT+LL K+ F + + ++FE LK AL SA ++ PD++ PFEI DASD
Sbjct: 393 FSTIARPLTNLLAKDAPFEFYGACLKSFEILKKALVSALMIQPPDWTLPFEITCDASDFV 452
Query: 285 VGAVLMQAG----HPLAFLSKALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRT 340
VGAVL Q + + SK L + EKE L ++ A++++RSYL + +I T
Sbjct: 453 VGAVLSQTKDKKHQAICYASKTLTGAQLNYATTEKELLVVVFAINKFRSYLVGAKVIIYT 512
Query: 341 DQRSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRAADALSRCSTDD 393
D +L +L +K A P + + L + + K+G++N D LSR D
Sbjct: 513 DNAALKYLLTKKDAKPRLLRWILLLQEFDLEIKDKKGVENSVTDHLSRLQITD 565
>Os02g0298600 Similar to Reverse transcriptase (Fragment)
Length = 149
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 71/138 (51%)
Query: 45 RYPLPVIDELLDDLAGATIFTSLDLRAGYHKIRMRPEDEHKTAFKTHHGHYEFRVMSYGL 104
R P IDE+L+ LA + F LD + YH+I + PED+ K F + Y +R MS+ L
Sbjct: 10 RAVTPFIDEMLERLANHSFFCFLDGYSWYHQISIHPEDQSKATFTCPYSTYAYRRMSFAL 69
Query: 105 TGAPATFQGVMNTVLSPLLRKGVLVFIDDILIYSATLTEHVQLLRQVFQLLTEHQLKVKR 164
APA+ Q M ++ ++ + VF+DD +Y T +Q L +V Q E L +
Sbjct: 70 CNAPASLQRCMMSIFLDMIEDIMEVFMDDFSVYGNTFGHCLQNLNKVLQRYQEKDLVLNW 129
Query: 165 SKCSFAQSSLIYLGHVIS 182
KC F I LGH +S
Sbjct: 130 EKCHFMVYEGIVLGHRVS 147
>Os06g0513700
Length = 414
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 26/278 (9%)
Query: 230 RPLTDLLKKNVVFVWTISH---QQAFEALKSALTSAPVLAIPDFSKPFEIETDASDKGVG 286
R L +K++V W H ++F+ L +L SAP++ PD+S PFEI DASD VG
Sbjct: 128 RVLQRCQEKDLVLNWEKCHFMCMKSFKILNESLISAPIIQPPDWSLPFEIMCDASDFAVG 187
Query: 287 AVLMQAG----HPLAFLSKALGPRNRGLSIYEKECLAILLAVDRWRSYLQFGEFVIRTDQ 342
AVL Q H +A+ SK L + EKE LAI+ A+D++RSYL + ++ TD
Sbjct: 188 AVLGQTKDRKHHAIAYASKTLTGAQLNYATTEKELLAIVFAIDKFRSYLVGAKVIVYTDH 247
Query: 343 RSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDHIQACALSV 402
+L +L +K + + + L + + K+ ++N AD LSR + +
Sbjct: 248 AALKYLLTKKDSKRRLIRWILLLQEFDIEIKDKKRVENSIADHLSRMQITNMHELPINDY 307
Query: 403 CIPDWLTEVQEGYLSDPYSADLLSKVTLQASAVPNFSLRDGILHYKNKIW-------IGN 455
D L +V + SD + A +++ + P + + I + +W + +
Sbjct: 308 LRDDMLLKVID---SDSWYATIVN-FMVAGHVPPGENKKRLIYKSRGHLWYAPYLYRVCS 363
Query: 456 NTTLQH--------RILSALHSGAIGGHSGVQVTYSRI 485
+ L+ +I+ H+ GGH G T+++I
Sbjct: 364 DGLLRRCVPVDKGMKIIEKCHAAPYGGHYGAFRTHAKI 401
>Os06g0471300
Length = 269
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 21/165 (12%)
Query: 269 DFSKPFEIETDASDKGVGAVLMQAG----HPLAFLSKALGPRNRGLSIYEKECLAILLAV 324
D+S PFEI DASD VGAVL Q H +A+ SK L + EKE LAI+ A+
Sbjct: 84 DWSLPFEIMYDASDFAVGAVLGQTKDRKHHAIAYASKTLTGAQLNYATTEKELLAIVFAI 143
Query: 325 DRWRSYLQFGEFVIRTDQRSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRAAD 384
D++RSYL + ++ TD +L +L +K A W + + L + + K+G++N AD
Sbjct: 144 DKFRSYLVGAKVIVYTDHAALKYLLTKKDAKSWLIRWILLLQEFDIEIKDKKGVENSVAD 203
Query: 385 ALSRCSTDDHIQACALSVCIPDWLTEVQEGYLSDPYSADLLSKVT 429
LSR +T +QE ++D D+L KVT
Sbjct: 204 HLSRMQ-----------------ITNMQELPINDYLRDDMLLKVT 231
>Os11g0415300
Length = 299
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 21/155 (13%)
Query: 279 DASDKGVGAVLMQAG----HPLAFLSKALGPRNRGLSIYEKECLAILLAVDRWRSYLQFG 334
DASD VGAVL Q H +A+ SK L + EKE LAI+ A+D+++SYL
Sbjct: 3 DASDFAVGAVLGQTKDRKHHVIAYASKTLTGAQVNYATTEKELLAIVFAIDKFKSYLLGA 62
Query: 335 EFVIRTDQRSLIHLGDQKLATPWQQKAMTKLLGLNYRLVYKRGLDNRAADALSRCSTDDH 394
+ ++ TD +L +L +K A P + + L + + K+G++N AD LS H
Sbjct: 63 KVIVYTDHPALKYLLCKKDAKPRLIRWILLLQEFDIEIKDKKGVENSVADHLS------H 116
Query: 395 IQACALSVCIPDWLTEVQEGYLSDPYSADLLSKVT 429
+Q +T +QE ++D D+L KVT
Sbjct: 117 MQ-----------VTSIQELPINDYLQDDMLLKVT 140
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,276,572
Number of extensions: 649270
Number of successful extensions: 1364
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 19
Length of query: 517
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 412
Effective length of database: 11,553,331
Effective search space: 4759972372
Effective search space used: 4759972372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)