Os11g0617500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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Os11g0617500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 290.93 | 0.801 | 5.33 | 1.16 | 0.744 | -1.98 | -1.32 | 1.44 | 0.735 | 10.1 | 16.21 | 1371 | -- | -- |
| 294.23 | 0.799 | 5.36 | 1.05 | 0.636 | -1.87 | -1.31 | -- | 0.689 | 10.2 | 16.14 | 2463 | -- | -- |
| 297.63 | 0.804 | 5.33 | 1.16 | 0.745 | -1.94 | -- | 1.64 | 0.739 | 10.3 | 16.41 | 1360 | -- | -- |
| 300.8 | 0.808 | 5.36 | 0.901 | 0.608 | -1.97 | -- | -- | 0.681 | 10.2 | 15.35 | 2488 | -- | -- |
| 320.02 | 0.833 | 5.32 | 1.35 | -- | -2.17 | -- | 1.78 | 0.792 | -- | 13.69 | 2316 | -- | -- |
| 368.85 | 0.9 | 5.46 | 0.158 | 0.826 | -- | -1.18 | -- | 0.257 | 10.7 | -- | -- | -- | -- |
| 374.57 | 0.906 | 5.46 | 0.112 | 0.831 | -- | -- | -- | 0.254 | 11 | -- | -- | -- | -- |
| 322.14 | 0.836 | 5.38 | 0.919 | -- | -2.19 | -- | -- | 0.696 | -- | 13.92 | 2329 | -- | -- |
| 313.23 | 0.824 | 5.4 | -- | 0.759 | -1.61 | -- | -- | 0.515 | 10.5 | 16.6 | 1402 | -- | -- |
| 417.48 | 0.955 | 5.48 | 0.0936 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 374.9 | 0.906 | 5.46 | -- | 0.83 | -- | -- | -- | 0.242 | 11 | -- | -- | -- | -- |
| 326.54 | 0.842 | 5.42 | -- | -- | -2.2 | -- | -- | 0.528 | -- | 15.3 | 860 | -- | -- |
| 417.71 | 0.954 | 5.48 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 2 | 280.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 25 | 282.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 33 | 283.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 36 | 283.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 55 | 283.95 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 59 | 284.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 94 | 284.80 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 103 | 285.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 115 | 285.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 132 | 285.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 12 |
| 138 | 285.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 453 | 288.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 474 | 288.94 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 570 | 289.48 | wind | 9 | 43200 | > th | dose independent | sin | 22 | NA |
| 596 | 289.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 613 | 289.65 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 643 | 289.78 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 687 | 289.97 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 802 | 290.43 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 808 | 290.45 | wind | 9 | 43200 | < th | dose independent | sin | 23 | NA |
| 809 | 290.45 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 838 | 290.55 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 854 | 290.59 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 980 | 291.03 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 16 |