Os01g0758700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0758700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.98 | 0.438 | 8.67 | -3.91 | 0.185 | 1.8 | -1.18 | -1.04 | -0.494 | 12.6 | 6.621 | 646 | -- | -- |
| 87.71 | 0.436 | 8.65 | -3.72 | 0.182 | 1.76 | -1.13 | -- | -0.44 | 13.1 | 6.119 | 648 | -- | -- |
| 92.37 | 0.448 | 8.67 | -3.89 | 0.115 | 1.85 | -- | -0.898 | -0.492 | 10.6 | 0.5217 | 543 | -- | -- |
| 92.69 | 0.448 | 8.65 | -3.78 | 0.206 | 1.8 | -- | -- | -0.457 | 12.1 | 12.79 | 667 | -- | -- |
| 92.9 | 0.449 | 8.67 | -3.91 | -- | 1.78 | -- | -1.1 | -0.489 | -- | 3.056 | 485 | -- | -- |
| 132.48 | 0.54 | 8.6 | -3.33 | 0.369 | -- | -0.572 | -- | -0.178 | 17.1 | -- | -- | -- | -- |
| 132.59 | 0.539 | 8.6 | -3.34 | 0.385 | -- | -- | -- | -0.181 | 18.2 | -- | -- | -- | -- |
| 93.71 | 0.451 | 8.65 | -3.74 | -- | 1.74 | -- | -- | -0.441 | -- | 3.156 | 521 | -- | -- |
| 423.17 | 0.958 | 8.51 | -- | 0.0147 | 0.701 | -- | -- | 0.201 | 23.1 | 27.56 | 455 | -- | -- |
| 140.28 | 0.553 | 8.59 | -3.35 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 426.09 | 0.966 | 8.52 | -- | 0.435 | -- | -- | -- | 0.19 | 17.8 | -- | -- | -- | -- |
| 423.18 | 0.958 | 8.5 | -- | -- | 0.705 | -- | -- | 0.203 | -- | 27.6 | 457 | -- | -- |
| 435.9 | 0.975 | 8.51 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.17 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 4 | 81.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 5 | 81.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 6 | 82.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 7 | 82.01 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 8 | 82.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 12 | 82.19 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 23 | 82.47 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 26 | 82.49 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 31 | 82.58 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 33 | 82.59 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 42 | 82.68 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 43 | 82.72 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 44 | 82.72 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 45 | 82.73 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 47 | 82.74 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 66 | 82.90 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 67 | 82.98 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 177 | 84.06 | wind | 5 | 43200 | > th | dose dependent | sin | 11 | NA |
| 187 | 84.13 | wind | 7 | 43200 | > th | dose independent | sin | 11 | NA |
| 192 | 84.16 | wind | 7 | 43200 | < th | dose independent | sin | 11 | NA |
| 233 | 84.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 267 | 85.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 335 | 85.95 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 370 | 86.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 399 | 86.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 401 | 86.48 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 418 | 86.61 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 469 | 86.99 | radiation | 30 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 477 | 87.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 479 | 87.03 | radiation | 30 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 519 | 87.28 | radiation | 30 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 521 | 87.29 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 525 | 87.30 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 563 | 87.49 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 570 | 87.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 589 | 87.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 672 | 88.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 695 | 88.17 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 725 | 88.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 761 | 88.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 774 | 88.49 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 781 | 88.52 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 835 | 88.75 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 848 | 88.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 16 |
| 919 | 89.07 | temperature | 15 | 720 | > th | dose dependent | sin | 22 | NA |
| 946 | 89.19 | temperature | 15 | 270 | > th | dose dependent | sin | 20 | NA |