BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0758700 Os01g0758700|AK106605
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0758700 Conserved hypothetical protein 281 9e-77
Os08g0123950 Integrase, catalytic region domain containing ... 126 4e-30
Os07g0510800 RNA-directed DNA polymerase (Reverse transcrip... 125 1e-29
Os06g0493000 RNA-directed DNA polymerase (Reverse transcrip... 112 9e-26
Os04g0191000 Retrotransposon gag protein family protein 66 7e-12
>Os01g0758700 Conserved hypothetical protein
Length = 135
Score = 281 bits (719), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MSDPEASSKVQTLCISPAAVPDFTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGH 60
MSDPEASSKVQTLCISPAAVPDFTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGH
Sbjct: 1 MSDPEASSKVQTLCISPAAVPDFTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGH 60
Query: 61 SGIHVTYQRVKQLFAWPHLRSTVMQFVNSCSICQQAKSEHVKYPGMLQPLPVPEHAWFWP 120
SGIHVTYQRVKQLFAWPHLRSTVMQFVNSCSICQQAKSEHVKYPGMLQPLPVPEHAWFWP
Sbjct: 61 SGIHVTYQRVKQLFAWPHLRSTVMQFVNSCSICQQAKSEHVKYPGMLQPLPVPEHAWFWP 120
Query: 121 KLEKWLINWLCRPLV 135
KLEKWLINWLCRPLV
Sbjct: 121 KLEKWLINWLCRPLV 135
>Os08g0123950 Integrase, catalytic region domain containing protein
Length = 783
Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 82/116 (70%)
Query: 2 SDPEASSKVQTLCISPAAVPDFTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGHS 61
+DP A+ V L ++P + P F+L+ GVL +K +WIGN+ +Q KI+ +H +PVGGHS
Sbjct: 246 TDPHATQLVAALTLNPNSKPHFSLQHGVLRYKGNIWIGNSPDLQLKIINEMHASPVGGHS 305
Query: 62 GIHVTYQRVKQLFAWPHLRSTVMQFVNSCSICQQAKSEHVKYPGMLQPLPVPEHAW 117
G VTY+R+KQLFAW ++S + + + +C IC QAK + +YP +LQPLPVP+ AW
Sbjct: 306 GFPVTYRRIKQLFAWNGMKSQIKETLANCQICAQAKPDRSRYPRLLQPLPVPKGAW 361
>Os07g0510800 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 517
Score = 125 bits (314), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/101 (47%), Positives = 79/101 (78%)
Query: 1 MSDPEASSKVQTLCISPAAVPDFTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGH 60
+SDP ++ + + + +AVP+F+L+DG+L++KN +WIGNN +Q +IL+ LH+ +GGH
Sbjct: 416 LSDPYSADLLSKVTLQASAVPNFSLRDGILHYKNKIWIGNNTTLQHRILSALHSGAIGGH 475
Query: 61 SGIHVTYQRVKQLFAWPHLRSTVMQFVNSCSICQQAKSEHV 101
SG+ VTY R+K+LFAW L+ +V++F++ CS+C+QAK+E V
Sbjct: 476 SGVQVTYSRIKKLFAWQGLKKSVLEFIDQCSVCKQAKAERV 516
>Os06g0493000 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 866
Score = 112 bits (279), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 77/116 (66%)
Query: 2 SDPEASSKVQTLCISPAAVPDFTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGHS 61
+DP+ L I+P + P +TLK G+L +K+ + +G +++++L + H + +GGHS
Sbjct: 403 TDPKCHELESHLHIAPQSHPPYTLKGGILRYKDHIVVGAGNTLREQLLVSFHDSALGGHS 462
Query: 62 GIHVTYQRVKQLFAWPHLRSTVMQFVNSCSICQQAKSEHVKYPGMLQPLPVPEHAW 117
G TYQR+KQLF WP ++ V QFV +C +CQ+ K+EH G+LQPLP+PE AW
Sbjct: 463 GERATYQRMKQLFYWPGMKLAVTQFVKACPVCQKNKTEHNMPAGLLQPLPLPEMAW 518
>Os04g0191000 Retrotransposon gag protein family protein
Length = 1463
Score = 66.2 bits (160), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 23 FTLKDGVLYFKNIMWIGNNVQVQQKILANLHTAPVGGHSGIHVTYQRVKQLFAWPHLRST 82
+ L D +L + + ++I + ++I+ H GH G+ T R+++ F P+++
Sbjct: 968 WALVDDLLQYNSWLYIPPASPLAREIIEATHE---DGHEGVKRTMHRLRREFHIPNMKQL 1024
Query: 83 VMQFVNSCSICQQAKSEHVKYPGMLQPLPVPEHAW 117
V +V SC++CQ+ KSEH+ G+L PLPVP+ W
Sbjct: 1025 VQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVW 1059
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,188,371
Number of extensions: 194954
Number of successful extensions: 382
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 6
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 150 (62.4 bits)