Os04g0283700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chromo domain containing protein.
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Os04g0283700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Chromo domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.32 | 0.353 | 8.03 | 2.05 | 0.348 | -1.18 | -0.506 | 2.6 | 0.668 | 3.76 | 22.9 | 1293 | -- | -- |
| 61.44 | 0.365 | 8.08 | 1.49 | 0.266 | -0.963 | -0.366 | -- | 0.634 | 3.86 | 20.99 | 8151 | -- | -- |
| 56.97 | 0.352 | 8.03 | 2.06 | 0.348 | -1.17 | -- | 2.55 | 0.671 | 4.31 | 22.97 | 1321 | -- | -- |
| 61.37 | 0.365 | 8.09 | 1.42 | 0.303 | -0.91 | -- | -- | 0.614 | 4.74 | 22.58 | 8429 | -- | -- |
| 59.54 | 0.359 | 8.03 | 2.15 | -- | -1.23 | -- | 2.76 | 0.711 | -- | 23 | 1711 | -- | -- |
| 91.48 | 0.448 | 8.17 | 0.983 | 0.241 | -- | -0.379 | -- | 0.263 | 4.72 | -- | -- | -- | -- |
| 91.7 | 0.448 | 8.16 | 0.986 | 0.247 | -- | -- | -- | 0.265 | 5.5 | -- | -- | -- | -- |
| 65.04 | 0.376 | 8.1 | 1.41 | -- | -0.914 | -- | -- | 0.587 | -- | 22.51 | 7748 | -- | -- |
| 102.96 | 0.473 | 8.16 | -- | 0.28 | -0.559 | -- | -- | 0.307 | 3.97 | 27.9 | 8151 | -- | -- |
| 94.88 | 0.455 | 8.17 | 0.994 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 117.31 | 0.507 | 8.19 | -- | 0.263 | -- | -- | -- | 0.155 | 5.34 | -- | -- | -- | -- |
| 106.53 | 0.481 | 8.16 | -- | -- | -0.582 | -- | -- | 0.297 | -- | 27.82 | 7826 | -- | -- |
| 120.93 | 0.513 | 8.19 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 4 | 57.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 17 | 57.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 31 | 57.87 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 34 | 57.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 53 | 57.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 76 | 58.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 117 | 58.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 131 | 58.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 160 | 58.23 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 264 | 58.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 270 | 58.63 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 304 | 58.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 413 | 58.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 462 | 59.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 600 | 59.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 618 | 59.24 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 624 | 59.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 638 | 59.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 933 | 60.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 938 | 60.09 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 949 | 60.13 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 959 | 60.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 970 | 60.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 972 | 60.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 978 | 60.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |