BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0575000 Os10g0575000|AY536428
(699 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0575000 Similar to Transcription factor MYC7E (Fragment) 981 0.0
Os01g0235700 Similar to BHLH transcription factor (Fragment) 114 3e-25
Os01g0705700 Similar to Transcription factor ICE1 (Inducer ... 107 3e-23
Os09g0519100 Similar to BHLH transcription factor (Fragment) 105 1e-22
Os12g0632600 88 2e-17
Os08g0543700 86 9e-17
Os03g0671000 82 2e-15
Os03g0725800 Basic helix-loop-helix dimerisation region bHL... 76 8e-14
Os03g0671800 Basic helix-loop-helix dimerisation region bHL... 75 1e-13
Os11g0523700 Similar to Transcription factor ICE1 (Inducer ... 74 3e-13
Os07g0211500 74 6e-13
Os01g0928000 Similar to Transcription factor ICE1 (Inducer ... 73 7e-13
Os10g0104300 70 4e-12
Os04g0557200 Similar to Anthocyanin regulatory B protein (F... 70 8e-12
>Os10g0575000 Similar to Transcription factor MYC7E (Fragment)
Length = 699
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/699 (72%), Positives = 509/699 (72%)
Query: 1 MNLWTDDNASMMEAFMASADLPAFPWGAASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MNLWTDDNASMMEAFMASADLPAFPWGAAST
Sbjct: 1 MNLWTDDNASMMEAFMASADLPAFPWGAASTPPPPPPPPHHHHQQQQQQVLPPPAAAPAA 60
Query: 61 XXFNQDTLQQRLQSIIEGSRETWTYAIFWQSSIDVSTGASLLXXXXXXXXXXXXXXRKQR 120
FNQDTLQQRLQSIIEGSRETWTYAIFWQSSIDVSTGASLL RKQR
Sbjct: 61 AAFNQDTLQQRLQSIIEGSRETWTYAIFWQSSIDVSTGASLLGWGDGYYKGCDDDKRKQR 120
Query: 121 SSTPAAAAEQEHRKRVLRELNSLIXXXXXXXXXXXXXXXXXXXWFFLVSMTQSFPNGLGL 180
SSTPAAAAEQEHRKRVLRELNSLI WFFLVSMTQSFPNGLGL
Sbjct: 121 SSTPAAAAEQEHRKRVLRELNSLIAGAGAAPDEAVEEEVTDTEWFFLVSMTQSFPNGLGL 180
Query: 181 PGQALFAAQPTWIATGLSSAPCDRARQAYTFGLRTMVCLPLATGVLELGSTDVIFQTGDS 240
PGQALFAAQPTWIATGLSSAPCDRARQAYTFGLRTMVCLPLATGVLELGSTDVIFQTGDS
Sbjct: 181 PGQALFAAQPTWIATGLSSAPCDRARQAYTFGLRTMVCLPLATGVLELGSTDVIFQTGDS 240
Query: 241 IPRIRALFNLXXXXXXXXXXXXXXXXXXXXVLWLADAPPMDMKDSISAADISVSKXXXXX 300
IPRIRALFNL VLWLADAPPMDMKDSISAADISVSK
Sbjct: 241 IPRIRALFNLSAAAASSWPPHPDAASADPSVLWLADAPPMDMKDSISAADISVSKPPPPP 300
Query: 301 XHQIQHFENGSTSTLTENPSPSVHAPTXXXXXXXXXXXXXXXXXXXXXXGPFRRELNFSD 360
HQIQHFENGSTSTLTENPSPSVHAPT GPFRRELNFSD
Sbjct: 301 PHQIQHFENGSTSTLTENPSPSVHAPTPSQPAAPPQRQQQQQQSSQAQQGPFRRELNFSD 360
Query: 361 FASNGGAAAPPFFKPETGEILNFGNDXXXXXXXXXXXXXXXXXXXXXXXXXXFSQHTPTL 420
FASNGGAAAPPFFKPETGEILNFGND FSQHTPTL
Sbjct: 361 FASNGGAAAPPFFKPETGEILNFGNDSSSGRRNPSPAPPAATASLTTAPGSLFSQHTPTL 420
Query: 421 TAAANDAKSNNQKRSMEATSRASNTNNHPAATANEGMLSFSSAPTTRPSTGTGAPAKSES 480
TAAANDAKSNNQKRSMEATSRASNTNNHPAATANEGMLSFSSAPTTRPSTGTGAPAKSES
Sbjct: 421 TAAANDAKSNNQKRSMEATSRASNTNNHPAATANEGMLSFSSAPTTRPSTGTGAPAKSES 480
Query: 481 DHSDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRF 540
DHSDL EEPLNHVEAERQRREKLNQRF
Sbjct: 481 DHSDLEASVREVESSRVVAPPPEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRF 540
Query: 541 YALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQSQMESLKKEXXXXXXX 600
YALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQSQMESLKKE
Sbjct: 541 YALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQSQMESLKKERDARPPA 600
Query: 601 XXXXXXXXXXXCHAVEIEAKILGLEAMIRVQCHKRNHPAARLMTALRELDLDVYHASVSV 660
CHAVEIEAKILGLEAMIRVQCHKRNHPAARLMTALRELDLDVYHASVSV
Sbjct: 601 PSGGGGDGGARCHAVEIEAKILGLEAMIRVQCHKRNHPAARLMTALRELDLDVYHASVSV 660
Query: 661 VKDLMIQQVAVKMASRVYSQDQLNAALYTRIAEPGTAAR 699
VKDLMIQQVAVKMASRVYSQDQLNAALYTRIAEPGTAAR
Sbjct: 661 VKDLMIQQVAVKMASRVYSQDQLNAALYTRIAEPGTAAR 699
>Os01g0235700 Similar to BHLH transcription factor (Fragment)
Length = 617
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 87/154 (56%), Gaps = 19/154 (12%)
Query: 520 EEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETD 579
EEPLNHVEAERQRREKLNQRFYALRAVVPN+SKMDKASLLGDAI+YI +L+ KL +E +
Sbjct: 459 EEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLKEMEVE 518
Query: 580 KETL-QSQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLEAMIRVQCHKRNHP 638
+E L +S M + E++ +++ E ++RV +HP
Sbjct: 519 RERLIESGMIDPRDRTPRP------------------EVDIQVVQDEVLVRVMSPMESHP 560
Query: 639 AARLMTALRELDLDVYHASVSVVKDLMIQQVAVK 672
+ A E ++ + ++ + +K
Sbjct: 561 VRAIFQAFEEAEVHAGESKITSNNGTAVHSFIIK 594
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 82/187 (43%), Gaps = 7/187 (3%)
Query: 68 LQQRLQSIIEGSR--ETWTYAIFWQSSIDVSTGASLLXXXXXXXXXXXXXXRKQRSSTPA 125
LQ RLQ ++E R W YAIFWQ S +G +L +S +
Sbjct: 60 LQNRLQELVESDRPGAGWNYAIFWQLS-RTKSGDLVLGWGDGSCREPHDGEMGPAASAGS 118
Query: 126 AAAEQEHRKRVLRELNSLIXXXXXXXXXXXXXXXXXXXWFFLVSMTQSFPNGLGLPGQAL 185
A+Q RKRVL+ L+S FFL SM +FP G PGQ
Sbjct: 119 DEAKQRMRKRVLQRLHSAFGGVDEEDYAPGIDQVTDTEMFFLASMYFAFPRRAGGPGQVF 178
Query: 186 FAAQPTWIATG----LSSAPCDRARQAYTFGLRTMVCLPLATGVLELGSTDVIFQTGDSI 241
A P WI + C R A G RT+V +P TGVLELGS + ++ D++
Sbjct: 179 AAGVPLWIPNTERNVFPANYCYRGYLANAAGFRTIVLVPFETGVLELGSMQQVAESSDTL 238
Query: 242 PRIRALF 248
IR++F
Sbjct: 239 QTIRSVF 245
>Os01g0705700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 460
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 79/156 (50%), Gaps = 29/156 (18%)
Query: 520 EEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETD 579
EEPLNHVEAERQRREKLNQRFYALRAVVP +SKMDKASLL DAI+YI EL +L
Sbjct: 310 EEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLRG---- 365
Query: 580 KETLQSQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLEAMIRVQCHKRNHPA 639
+E K + E ++RV HP
Sbjct: 366 -------------------------DAPVPARADGPAVEVKAMQDEVVLRVTTPLDEHPI 400
Query: 640 ARLMTALRELDLDVYHASVSVVKDLMIQQVAVKMAS 675
+R+ A+RE + V + V+V D + + V+ A
Sbjct: 401 SRVFHAMRESQISVVASDVAVSDDAVTHTLMVRSAG 436
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 74/180 (41%), Gaps = 12/180 (6%)
Query: 68 LQQRLQSIIEGSRETWTYAIFWQSSIDVSTGASLLXXXXXXXXXXXXXXRKQRSSTPAAA 127
LQ L ++E WTY IFWQ S + R A
Sbjct: 42 LQASLHDLVERQGGAWTYGIFWQESRGAGA--ASGRAARAVLGWGDGHCRDGAGHGEVGA 99
Query: 128 AEQE-HRKRVLRELNSLIXXXXXXXXXXXXX--XXXXXXWFFLVSMTQSFPNGLGLPGQA 184
AE+ RKRVL L++L +FL SM SFP G G PG+A
Sbjct: 100 AERSVARKRVLLRLHALYGGGDEDGADYALRLDRVTGAEMYFLASMYFSFPEGSGGPGRA 159
Query: 185 LFAAQPTWI-----ATGLSSAPC--DRARQAYTFGLRTMVCLPLATGVLELGSTDVIFQT 237
L + + W +G SAP R+ A + GLRT+V LP GVLELGS I +T
Sbjct: 160 LASGRHAWADVDPHPSGSGSAPGWYVRSSLAQSAGLRTVVFLPCKGGVLELGSVVAIRET 219
>Os09g0519100 Similar to BHLH transcription factor (Fragment)
Length = 284
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 93/172 (54%), Gaps = 3/172 (1%)
Query: 523 LNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETD-KE 581
++HVEAERQRREKLN+RF LRA VP VS+MDKASLL DA +YI ELR ++ LE+D ++
Sbjct: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDKASLLADAAAYIAELRARVARLESDARQ 169
Query: 582 TLQSQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLE-AMIRVQCHKRNHPAA 640
++ E +E + +G + A +RV H A
Sbjct: 170 AAAARFEPSSCGGGGNASYHGGGGGGGAAPGLDEAVEVRKMGRDAAAVRVTTTGARHAPA 229
Query: 641 RLMTALRELDLDVYHASVSVVKD-LMIQQVAVKMASRVYSQDQLNAALYTRI 691
RLM ALR L+L V HA V V +Q+V V + + + D L AAL R+
Sbjct: 230 RLMGALRSLELPVQHACVMRVHGATTVQEVLVDVPAALQDGDALRAALLQRL 281
>Os12g0632600
Length = 338
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 524 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETL 583
+H+ AER+RREK+NQRF L V+P + KMDKA++LGDA+ Y+ EL+ K+ LE +
Sbjct: 167 DHIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQEKVKTLEEEDGGG 226
Query: 584 QSQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLEAMIRVQCHKRNHPAARLM 643
+ ++K EIE ++ ++RVQC RL+
Sbjct: 227 RPAAMVVRKSSCSGRQSAAGDGDGEG---RVPEIEVRVWERSVLVRVQCGNSRGLLVRLL 283
Query: 644 TALRELDLDVYHASV 658
+ + EL L + H SV
Sbjct: 284 SEVEELRLGITHTSV 298
>Os08g0543700
Length = 263
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 522 PLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKE 581
P+ HVEAERQRREKLN+RF LRA VP VS+MDKASLL DA+ YI ELR ++ LE +
Sbjct: 92 PIGHVEAERQRREKLNRRFCELRAAVPTVSRMDKASLLADAVDYIAELRRRVERLEAEAR 151
Query: 582 TLQSQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLEAMI---RVQCHKRNHP 638
+ ++ +++G +A I H
Sbjct: 152 RAPLAPSAAAAAAWAAGLGAGAIGRD--------DLVVRMIGRDAAILRLTTAAAAARHA 203
Query: 639 AARLMTALRELDLDVYHASVSVVKDLMIQQVAV-KMASRVYSQDQLNAALY 688
AR+M A+R L+L V HASV+ V +Q V V + + + + +L AAL
Sbjct: 204 PARMMCAVRALNLAVQHASVARVGGATVQDVMVDDVPAALQDEARLRAALL 254
>Os03g0671000
Length = 289
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 523 LNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKET 582
L HV AER+RREK+NQRF L AV+P + KMDKA++L DA SYI EL+ KL ALE
Sbjct: 129 LEHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALE----- 183
Query: 583 LQSQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLEAMIRVQCHKRNHPAARL 642
+ + + +E+ M+R+ C R+
Sbjct: 184 ---EQAAARVTEAAMATPSPARAMNHLPVPPEIEVRCSPTNNVVMVRIHCENGEGVIVRI 240
Query: 643 MTALRELDLDVYHASVSVVKDLMIQQVAVKMASRVYSQD 681
+ + E+ L + +A+V + +++ ++ S +Y QD
Sbjct: 241 LAEVEEIHLRIINANVEEGFTVKAEEIVGRLNSALYKQD 279
>Os03g0725800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 359
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 525 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQ 584
H+ AER+RREKL+QRF AL +VP + KMDKAS+LGDAI Y+ +L+ ++ LE +E +
Sbjct: 182 HILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLE--EEARR 239
Query: 585 SQMES---LKKEXXXXXXXXXXXXXXXXXXCHAV----EIEAKILGLEAMIRVQCHKRNH 637
+E+ +KK A EIEA++ ++++ C R
Sbjct: 240 RPVEAAVLVKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRK- 298
Query: 638 PAARLMTALRELD 650
L+TAL E++
Sbjct: 299 --GALITALSEVE 309
>Os03g0671800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 385
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 525 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQ 584
H+ AER+RREK+NQRF L V+P + KMDKA++L DA+ Y+ E++ KL+ LE +
Sbjct: 193 HIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEKLSELEQHQNGGV 252
Query: 585 SQMESLKKEXXXXXXXXXXXXXXXXXXCHAV----------EIEAKILGLEAMIRVQCHK 634
LKK + EIEAKI M+R+ H
Sbjct: 253 ESAILLKKPCIATSSSDGGCPAASSAVAGSSSSGTARSSLPEIEAKISHGNVMVRI--HG 310
Query: 635 RNHPAA---RLMTALRELDLDVYHASV 658
N+ RL+ A+ L L + H +V
Sbjct: 311 ENNGKGSLVRLLAAVEGLHLGITHTNV 337
>Os11g0523700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 524
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 522 PLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKE 581
P ++ AER+RR+KLN R Y LR+VVP +SKMD+AS+LGDAI Y+ EL K+ L+ + E
Sbjct: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
Query: 582 T 582
+
Sbjct: 394 S 394
>Os07g0211500
Length = 658
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 524 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALE 577
NHV ER+RREKLN++F LR++VP ++KMDKAS+LGD I Y+ +LR ++ LE
Sbjct: 475 NHVLKERRRREKLNEKFIILRSLVPFMTKMDKASILGDTIEYVKQLRNRIQELE 528
>Os01g0928000 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 381
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 522 PLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKE 581
P ++ AER+RR+KLN R Y LR+VVP +SKMD+AS+LGDAI Y+ EL ++ L + E
Sbjct: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 250
Query: 582 TLQS 585
+ S
Sbjct: 251 SAPS 254
>Os10g0104300
Length = 325
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 525 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQ 584
HV AER+RREK++Q+F L ++VP ++K DK S+LG I Y++ LR ++ L+ D +++
Sbjct: 157 HVIAERKRREKMHQQFTTLASIVPEITKTDKVSVLGSTIEYVHHLRERVKILQ-DIQSMG 215
Query: 585 SQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLEAMIRVQCHKRNHPAARLMT 644
S + +++EA + G ++RV C ++ +L+T
Sbjct: 216 STQPPISDARSRAGSGDDEDDDGNNNEVE-IKVEANLQGTTVLLRVVCPEKKGVLIKLLT 274
Query: 645 ALRELDLDVYHASV 658
L +L L + +V
Sbjct: 275 ELEKLGLSTMNTNV 288
>Os04g0557200 Similar to Anthocyanin regulatory B protein (Fragment)
Length = 559
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 524 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKE-- 581
NHV +ER+RREKLN+ F L+++VP++ K+DKAS+L + I+Y+ L ++ LE+ E
Sbjct: 384 NHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSEPS 443
Query: 582 -------TLQSQMESLKKEXXXXXXXXXXXXXXXXXXCHAVEIEAKILGLEAMIRVQCHK 634
Q + E KE V + K++ LE VQC
Sbjct: 444 HQRATETGQQRRCEITGKELVSEIGVSGGGDAGREHHHVNVTVTDKVVLLE----VQCRW 499
Query: 635 RNHPAARLMTALRELDLDVYHASVSVVKDLMIQQVAVKMA 674
+ R+ A++ L LDV S L+ ++ K A
Sbjct: 500 KELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAKFA 539
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,050,642
Number of extensions: 446541
Number of successful extensions: 1739
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1736
Number of HSP's successfully gapped: 17
Length of query: 699
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 591
Effective length of database: 11,396,689
Effective search space: 6735443199
Effective search space used: 6735443199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)