Os10g0104300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0104300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.04 | 0.355 | 3.01 | 0.824 | 0.00987 | -1.34 | -0.148 | 12.9 | -0.0158 | 0.484 | 29.66 | 252 | -- | -- |
| 58.84 | 0.36 | 3.1 | 0.0839 | 0.0382 | 0.214 | -0.212 | -- | -0.0278 | 2.65 | 29.66 | 252 | -- | -- |
| 57.1 | 0.352 | 3.01 | 0.822 | 0.00236 | -1.26 | -- | 12.2 | -0.00563 | 23.3 | 29.47 | 259 | -- | -- |
| 56.7 | 0.351 | 3.12 | 0.066 | 0.00478 | 1.16 | -- | -- | -0.0509 | 18.5 | 35 | 7 | -- | -- |
| 57.1 | 0.352 | 3.01 | 0.819 | -- | -1.25 | -- | 12.1 | -0.00635 | -- | 29.46 | 259 | -- | -- |
| 59.26 | 0.361 | 3.1 | 0.0955 | 0.0113 | -- | -0.254 | -- | -0.035 | 2.59 | -- | -- | -- | -- |
| 59.49 | 0.361 | 3.1 | 0.102 | 0.011 | -- | -- | -- | -0.0336 | 3.29 | -- | -- | -- | -- |
| 55.88 | 0.348 | 3.1 | 0.0924 | -- | 1.9 | -- | -- | -0.0291 | -- | 34.82 | 7 | -- | -- |
| 56.09 | 0.349 | 3.1 | -- | 0.0148 | 1.92 | -- | -- | -0.0396 | 6.66 | 34.7 | 6 | -- | -- |
| 59.49 | 0.36 | 3.1 | 0.102 | -- | -- | -- | -- | -0.0333 | -- | -- | -- | -- | -- |
| 59.76 | 0.362 | 3.1 | -- | 0.013 | -- | -- | -- | -0.0449 | 3.28 | -- | -- | -- | -- |
| 56.1 | 0.349 | 3.1 | -- | -- | 1.92 | -- | -- | -0.0393 | -- | 34.71 | 4 | -- | -- |
| 59.77 | 0.361 | 3.1 | -- | -- | -- | -- | -- | -0.0446 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.18 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 53.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 6 | 53.19 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 10 | 53.19 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 16 | 53.19 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 17 | 53.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 37 | 53.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 50 | 53.32 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 51 | 53.36 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 53 | 53.43 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 54 | 53.44 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 55 | 53.45 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 60 | 53.54 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 61 | 53.55 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 63 | 53.59 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 64 | 53.61 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 69 | 53.63 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 73 | 53.64 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 75 | 53.64 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 76 | 53.64 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 80 | 53.64 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 82 | 53.64 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 87 | 53.64 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 88 | 53.64 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 89 | 53.64 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 94 | 53.64 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 97 | 53.71 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 102 | 54.01 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 104 | 54.03 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 105 | 54.07 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 107 | 54.24 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 108 | 54.25 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 110 | 54.25 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 113 | 54.26 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 160 | 55.65 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 161 | 55.66 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 162 | 55.66 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 163 | 55.67 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 164 | 55.67 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 180 | 55.84 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 187 | 56.04 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 11 | 3 |
| 200 | 56.22 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 203 | 56.26 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 204 | 56.27 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 211 | 56.32 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 0 | NA |
| 215 | 56.36 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 0 | NA |
| 220 | 56.38 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 6 |
| 223 | 56.39 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 244 | 56.49 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 247 | 56.52 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 274 | 56.62 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 275 | 56.62 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 291 | 56.65 | atmosphere | 1000.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 298 | 56.67 | wind | 7.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 307 | 56.69 | wind | 7.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 343 | 56.77 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 24 | 18 |
| 362 | 56.79 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 10 | 5 |
| 389 | 56.83 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 6 | 20 |
| 461 | 56.90 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 476 | 56.90 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 498 | 56.93 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 519 | 56.95 | temperature | 30.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 540 | 56.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 634 | 57.02 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 24 | 18 |
| 645 | 57.03 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 13 | 5 |
| 650 | 57.04 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 685 | 57.06 | temperature | 30.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 836 | 57.11 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 844 | 57.11 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 848 | 57.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 849 | 57.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 854 | 57.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 856 | 57.12 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 4 | 16 |
| 857 | 57.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 882 | 57.14 | temperature | 30.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 991 | 57.18 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 1000 | 57.18 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 14 |