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Os01g0928000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0236) R2 : 0.629
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.63 (0.0587) R2dC : 0.631 R2C : 0.627
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0659 (0.0495) R2dN8 : 0.00186 R2N8 : -0.00217
σ : 0.444
deviance : 89.91
__
_____
C
peak time of C : 8.94
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.81 0.366 11.3 0.608 1.58 -1.36 -1.02 -1.78 -0.00569 8.77 0.7318 7317 -- --
63.03 0.37 11.3 0.444 1.66 -0.924 -0.838 -- -0.0203 8.82 1.321 7309 -- --
64.23 0.373 11.3 0.54 1.57 -1.28 -- -1.47 -0.00689 8.81 0.828 7316 -- --
65.68 0.377 11.3 0.424 1.63 -0.932 -- -- -0.08 8.84 1.68 7309 -- --
122.83 0.519 11.3 0.579 -- -0.993 -- 0.653 0.125 -- 1.581 7376 -- --
77.05 0.412 11.3 0.644 1.63 -- -0.932 -- 0.134 8.94 -- -- -- --
80.02 0.419 11.3 0.613 1.63 -- -- -- 0.134 8.97 -- -- -- --
125.3 0.524 11.3 0.591 -- -0.992 -- -- 0.125 -- 1.891 7372 -- --
63.94 0.372 11.3 -- 1.6 -0.863 -- -- -0.0644 8.97 0.3732 31825 -- --
231.9 0.712 11.3 0.611 -- -- -- -- 0.145 -- -- -- -- --
89.91 0.444 11.3 -- 1.63 -- -- -- 0.0659 8.94 -- -- -- --
134.5 0.542 11.3 -- -- -0.995 -- -- 0.0594 -- 1.891 7372 -- --
241.75 0.726 11.3 -- -- -- -- -- 0.0768 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.96 temperature 10 270 > th dose dependent rect. 3 19
2 56.16 temperature 10 270 > th dose dependent rect. 2 21
13 58.16 temperature 15 10 > th dose dependent rect. 5 19
37 59.54 temperature 30 90 < th dose independent rect. 9 19
42 59.81 radiation 1 30 < th dose independent rect. 20 23
43 59.84 temperature 30 270 < th dose independent rect. 7 21
44 59.84 radiation 30 14400 < th dose dependent rect. 24 5
47 60.04 radiation 1 30 < th dose independent rect. 22 21
50 60.07 radiation 1 14400 < th dose dependent rect. 24 5
57 60.14 humidity 90 43200 > th dose independent rect. 22 1
62 60.24 radiation 1 270 > th dose independent rect. 18 12
65 60.27 radiation 1 14400 < th dose dependent rect. 21 8
70 60.37 radiation 1 30 < th dose dependent rect. 20 23
72 60.41 radiation 1 30 < th dose dependent rect. 22 21
73 60.43 radiation 1 14400 > th dose independent rect. 18 1
86 60.46 temperature 10 720 > th dose dependent rect. 19 21
90 60.51 temperature 25 4320 > th dose independent rect. 2 12
97 60.61 temperature 25 4320 < th dose independent rect. 3 11
101 60.65 humidity 90 43200 < th dose independent rect. 22 1
110 60.69 humidity 80 43200 > th dose independent rect. 12 1
112 60.69 temperature 20 90 > th dose dependent rect. 4 5
121 60.73 humidity 80 43200 < th dose independent rect. 12 2
128 60.75 temperature 20 10 > th dose dependent rect. 5 4
132 60.76 radiation 40 4320 < th dose dependent rect. 18 11
141 60.79 atmosphere 1005 43200 > th dose independent rect. 15 2
146 60.80 atmosphere 1005 43200 > th dose independent rect. 13 4
158 60.83 radiation 30 14400 < th dose dependent rect. 21 8
160 60.84 temperature 30 90 < th dose independent rect. 9 10
163 60.85 temperature 25 4320 > th dose independent sin 3 NA
179 60.88 radiation 1 14400 < th dose dependent rect. 18 1
186 60.90 radiation 1 14400 < th dose independent rect. 18 2
197 60.92 radiation 1 14400 < th dose independent rect. 18 10
200 60.92 humidity 90 43200 > th dose dependent rect. 22 1
201 60.92 temperature 20 720 > th dose dependent rect. 19 20
211 60.94 radiation 1 14400 < th dose independent rect. 18 4
216 60.95 temperature 25 4320 < th dose independent sin 3 NA
259 61.04 atmosphere 1005 43200 < th dose independent rect. 13 1
260 61.04 temperature 25 4320 > th dose independent rect. 8 5
269 61.05 temperature 20 720 > th dose dependent rect. 4 3
284 61.09 temperature 25 4320 > th dose independent rect. 10 2
308 61.14 atmosphere 1005 43200 < th dose independent rect. 13 4
309 61.15 humidity 80 43200 > th dose independent rect. 10 4
347 61.22 atmosphere 1005 43200 < th dose independent rect. 16 1
376 61.26 temperature 30 90 < th dose independent rect. 11 17
377 61.26 humidity 90 43200 > th dose dependent rect. 19 5
380 61.27 temperature 20 270 > th dose dependent rect. 5 1
391 61.28 radiation 1 1440 < th dose dependent rect. 24 5
399 61.30 humidity 90 43200 > th dose dependent rect. 17 20
432 61.33 humidity 90 43200 > th dose dependent rect. 5 23
436 61.34 humidity 90 43200 > th dose dependent rect. 17 9
441 61.34 humidity 90 43200 > th dose dependent rect. 3 23
445 61.35 temperature 30 270 < th dose independent rect. 14 13
480 61.37 humidity 90 43200 > th dose dependent rect. 1 23
484 61.38 temperature 30 270 < th dose independent rect. 7 10
487 61.38 humidity 90 43200 > th dose dependent no NA NA
497 61.38 humidity 90 43200 > th dose dependent rect. 8 23
498 61.38 humidity 90 43200 > th dose dependent rect. 11 23
515 61.39 humidity 90 43200 > th dose dependent rect. 21 23
520 61.40 humidity 90 43200 > th dose independent rect. 17 20
548 61.42 wind 5 43200 < th dose independent rect. 11 1
570 61.43 humidity 90 43200 > th dose independent rect. 9 17
575 61.43 humidity 80 43200 > th dose dependent rect. 10 1
588 61.44 humidity 90 43200 > th dose independent rect. 5 22
653 61.47 humidity 90 43200 > th dose independent rect. 3 23
662 61.48 humidity 90 43200 > th dose independent rect. 11 15
666 61.48 humidity 90 43200 > th dose dependent sin 5 NA
675 61.49 radiation 1 30 < th dose independent sin 10 NA
698 61.49 humidity 90 43200 > th dose dependent rect. 11 15
703 61.50 wind 5 43200 > th dose independent rect. 11 1
714 61.50 humidity 90 43200 > th dose dependent sin 16 NA
755 61.53 humidity 90 43200 > th dose independent sin 17 NA
762 61.53 humidity 90 43200 < th dose independent rect. 9 17
767 61.53 humidity 70 43200 > th dose dependent rect. 13 1
770 61.53 humidity 90 43200 > th dose dependent rect. 1 12
775 61.53 radiation 1 14400 < th dose dependent rect. 18 21
803 61.55 wind 1 43200 > th dose dependent rect. 11 1
815 61.56 humidity 90 43200 > th dose independent no NA NA
824 61.56 wind 9 43200 < th dose dependent rect. 11 1
850 61.57 temperature 25 1440 > th dose dependent rect. 12 1
883 61.58 humidity 90 43200 > th dose independent rect. 8 23
884 61.58 humidity 90 43200 > th dose independent rect. 11 23
948 61.61 humidity 90 43200 > th dose independent rect. 22 23
952 61.61 humidity 90 43200 > th dose dependent rect. 3 7