BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0928000 Os01g0928000|AK102594
(381 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0928000 Similar to Transcription factor ICE1 (Inducer ... 459 e-129
Os11g0523700 Similar to Transcription factor ICE1 (Inducer ... 280 1e-75
Os10g0544200 Basic helix-loop-helix dimerisation region bHL... 121 8e-28
Os03g0135700 Similar to Transcriptional activator Rb homolo... 114 9e-26
Os02g0120500 Basic helix-loop-helix dimerisation region bHL... 90 4e-18
Os01g0235700 Similar to BHLH transcription factor (Fragment) 72 5e-13
Os10g0575000 Similar to Transcription factor MYC7E (Fragment) 72 7e-13
Os07g0211500 72 9e-13
Os01g0705700 Similar to Transcription factor ICE1 (Inducer ... 70 2e-12
Os04g0301500 Basic helix-loop-helix dimerisation region bHL... 69 5e-12
>Os01g0928000 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 381
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 253/381 (66%), Positives = 253/381 (66%)
Query: 1 MDXXXXXXXXXKMDELAXXXXXXXXDWSYXXXXXXXXXSFTAFPFXXXXXXXXRDVLSAS 60
MD KMDELA DWSY SFTAFPF RDVLSAS
Sbjct: 1 MDEAEAAAAAAKMDELAGGGGGGGGDWSYLAADALAAASFTAFPFHHHHHHHHRDVLSAS 60
Query: 61 TPSSLLLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHDFASSNXXXXXXXXXX 120
TPSSLLLN FHDFASSN
Sbjct: 61 TPSSLLLNMDAATAAAMFDFQAAFPSSSVPPPPPTTTAALPPFHDFASSNPFDDAPPPFL 120
Query: 121 XXXGQKXXXXXXXXXXXXXXXXWDDDDEIEQSVDASSMGVSASLENAAPVAAXXXXXXXX 180
GQK WDDDDEIEQSVDASSMGVSASLENAAPVAA
Sbjct: 121 APPGQKLGFLGPPGGAFGGGMGWDDDDEIEQSVDASSMGVSASLENAAPVAAGGGGGGGG 180
Query: 181 XXXXXXXXXMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ 240
MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ
Sbjct: 181 GGGRGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ 240
Query: 241 RINDLHNELEXXXXXXXXXXXXXXFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEV 300
RINDLHNELE FHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEV
Sbjct: 241 RINDLHNELESAPSSSLTGPSSASFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEV 300
Query: 301 RMREGHAVNIHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCRDGP 360
RMREGHAVNIHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCRDGP
Sbjct: 301 RMREGHAVNIHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCRDGP 360
Query: 361 GLGPEEIKTVLLHSAGLQNAM 381
GLGPEEIKTVLLHSAGLQNAM
Sbjct: 361 GLGPEEIKTVLLHSAGLQNAM 381
>Os11g0523700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 524
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/189 (73%), Positives = 157/189 (83%)
Query: 190 MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNEL 249
MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ+INDL NEL
Sbjct: 333 MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNEL 392
Query: 250 EXXXXXXXXXXXXXXFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEVRMREGHAVN 309
E FHP TPTL T P R+KEE+CP++ PSP+GQQ VEVR+REG AVN
Sbjct: 393 ESSPATSSLPPTPTSFHPLTPTLPTLPSRIKEEICPSALPSPTGQQPRVEVRLREGRAVN 452
Query: 310 IHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCRDGPGLGPEEIKT 369
IHMFCARRPG+L+S +RA++ LGL ++QAVISCFNGF +D+F+AEQC+DGPGL PEEIK
Sbjct: 453 IHMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTLDIFKAEQCKDGPGLLPEEIKA 512
Query: 370 VLLHSAGLQ 378
VL+ SAG
Sbjct: 513 VLMQSAGFH 521
>Os10g0544200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 380
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 250
P+KNLMAERRRRK+LNDRL MLRSVVP+ISKMDR SILGD I Y+KEL+ RI +L E
Sbjct: 194 PSKNLMAERRRRKRLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKELMDRIKNLQVEAA 253
Query: 251 XXXXXXXXXXXXXXFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEVRMREGHAVNI 310
+ TL+ P E P S EV RE + I
Sbjct: 254 TGDSSSSSTENLSMLKLN--TLKPPPSSSSGEETPLIRNS-----TRFEVERRENGSTRI 306
Query: 311 HMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAM------DVFRAEQCRDGPGLGP 364
M CA P +L STL AL++LG+ IEQ VISCF+ FAM D + E RD
Sbjct: 307 EMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTRDT----- 361
Query: 365 EEIKTVLLHSAG 376
EEIK L SAG
Sbjct: 362 EEIKQTLFRSAG 373
>Os03g0135700 Similar to Transcriptional activator Rb homolog (Fragment)
Length = 418
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 250
P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR SILGD I+Y+KEL +RI L E+
Sbjct: 180 PSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIG 239
Query: 251 XXXXXXXXXXXXXXFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEVRMREGHAVNI 310
TP +K+ + +V R I
Sbjct: 240 V-----------------TPEELDLLNTMKDSSSGNNNEMLVRNSTKFDVENRGSGNTRI 282
Query: 311 HMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCRDGPGLGPEEIKTV 370
+ C PG+L+ST+ AL+ LGL IEQ V+SCF+ F M ++ + +EIK
Sbjct: 283 EICCPANPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQT 342
Query: 371 LLHSAG 376
L SAG
Sbjct: 343 LFRSAG 348
>Os02g0120500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 552
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 30/189 (15%)
Query: 193 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEXX 252
KNL AER+RRKKLN LY LRS+VP I+KMDRASILGDAI+Y+ L +++ +L +ELE
Sbjct: 285 KNLEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQDELEDN 344
Query: 253 XXXXXXXXXXXXFHPSTPTLQTF------PGRVKEELCPTSFPSPSGQQAT--------- 297
HP +L P ++ P + S +++
Sbjct: 345 HVHHKPPDVLID-HPPPASLVGLDNDDASPPNSHQQQPPLAVSGSSSRRSNKDPAMTDDK 403
Query: 298 --------------VEVRMREGHAVNIHMFCARRPGILMSTLRALDSLGLGIEQAVISCF 343
+EVR +G+ + + + +PG + + A+++LGL + ++ +
Sbjct: 404 VGGGGGGGHRMEPQLEVRQVQGNELFVQVLWEHKPGGFVRLMDAMNALGLEVINVNVTTY 463
Query: 344 NGFAMDVFR 352
++VFR
Sbjct: 464 KTLVLNVFR 472
>Os01g0235700 Similar to BHLH transcription factor (Fragment)
Length = 617
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 250
P ++ AER+RR+KLN R Y LR+VVP ISKMD+AS+LGDAI Y+ +L +++ ++ E E
Sbjct: 461 PLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLKEMEVERE 520
>Os10g0575000 Similar to Transcription factor MYC7E (Fragment)
Length = 699
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 250
P ++ AER+RR+KLN R Y LR+VVP +SKMD+AS+LGDAI Y+ EL ++ L + E
Sbjct: 522 PLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKE 581
>Os07g0211500
Length = 658
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 45/54 (83%)
Query: 192 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL 245
A +++ ERRRR+KLN++ +LRS+VP ++KMD+ASILGD IEY+K+L RI +L
Sbjct: 474 ANHVLKERRRREKLNEKFIILRSLVPFMTKMDKASILGDTIEYVKQLRNRIQEL 527
>Os01g0705700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 460
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 42/53 (79%)
Query: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIN 243
P ++ AER+RR+KLN R Y LR+VVPKISKMD+AS+L DAI Y++EL R+
Sbjct: 312 PLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLR 364
>Os04g0301500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 310
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 193 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 238
KN++ ER RR+KLN++LY LRSVVP I+KMD+ASI+ DAIEY++ L
Sbjct: 93 KNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRL 138
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,903,289
Number of extensions: 246393
Number of successful extensions: 795
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 798
Number of HSP's successfully gapped: 10
Length of query: 381
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 278
Effective length of database: 11,657,759
Effective search space: 3240857002
Effective search space used: 3240857002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)