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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0544200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.03 (0.1) R2 : 0.585
β1 : -3.25 (0.396) R2dD : 0.21 R2D : 0.0696
β2 : 0.995 (0.158) R2dC : 0.0366 R2C : -0.0832
β3 : -2.18 (0.729) R2dE : 0.0592 R2E : -0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.5 (1.82) R2dD*E : 0.641 R2D*E : 0.0674
γ1 : 0.484 (0.146) R2dN8 : 0.0178 R2N8 : -0.0803
σ : 1.12
deviance : 573.62
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_____
C
peak time of C : 6.3
E
wheather : radiation
threshold : 9.98
memory length : 4332
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 2.95

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
573.25 1.12 6.02 -3.21 0.998 -2.2 0.615 -20.5 0.496 6.18 9.999 4332 16.8 1.83
858.95 1.38 5.06 -2.67 1.33 0.63 1.22 -- 1.5 5.89 9.999 4332 16.8 1.83
573.62 1.12 6.03 -3.25 0.995 -2.18 -- -20.5 0.484 6.3 9.98 4332 16.8 2.95
729.99 1.26 5.52 -2.94 1.07 -1.52 -- -- 0.734 6.11 0.3898 5759 17.1 3.27
620.41 1.16 6.02 -3.22 -- -2.2 -- -20.6 0.547 -- 9.989 4341 16.8 2.99
868.8 1.38 5.06 -2.65 1.11 -- 1.21 -- 1.51 5.83 -- -- -- --
871.8 1.38 5.06 -2.64 1.12 -- -- -- 1.51 6.16 -- -- -- --
770.88 1.29 5.52 -2.51 -- -1.51 -- -- 0.875 -- 0.3895 5763 17.7 3.34
866.85 1.37 5.52 -- 1.08 -1.53 -- -- 1.12 6.13 0.45 5756 17.9 2.95
937.01 1.43 5.08 -2.61 -- -- -- -- 1.53 -- -- -- -- --
1055.81 1.52 5 -- 1.08 -- -- -- 1.8 6.29 -- -- -- --
819.02 1.33 5.52 -- -- -3.44 -- -- 1.16 -- 0.3999 5774 18.1 4.06
1116.83 1.56 5.02 -- -- -- -- -- 1.82 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 539.11 humidity 90 43200 > th dose dependent rect. 5 1
2 544.19 humidity 90 43200 > th dose independent rect. 5 1
3 548.97 radiation 1 14400 < th dose dependent rect. 2 3
13 561.89 radiation 1 43200 < th dose independent rect. 18 10
17 562.11 radiation 1 43200 > th dose independent rect. 18 1
27 562.26 radiation 1 43200 < th dose independent rect. 18 1
28 562.28 radiation 1 43200 < th dose independent rect. 18 4
39 565.16 humidity 90 43200 > th dose dependent rect. 3 9
52 569.03 radiation 20 43200 < th dose independent rect. 8 1
56 570.36 humidity 90 43200 > th dose independent rect. 22 1
57 570.52 wind 5 43200 > th dose independent rect. 11 5
59 570.80 wind 5 43200 < th dose independent rect. 11 5
66 572.21 radiation 1 43200 < th dose dependent rect. 21 8
67 572.24 humidity 90 43200 > th dose dependent sin 3 NA
79 573.96 radiation 20 43200 < th dose independent rect. 4 5
85 574.02 radiation 20 43200 < th dose independent rect. 18 15
88 574.06 radiation 20 43200 < th dose independent rect. 23 10
94 574.57 wind 5 43200 > th dose independent rect. 10 7
102 575.03 radiation 20 43200 > th dose independent rect. 7 1
105 575.40 radiation 40 43200 < th dose independent rect. 9 1
159 576.86 radiation 40 43200 > th dose dependent rect. 9 1
176 577.94 wind 3 43200 > th dose dependent rect. 11 4
177 577.95 humidity 90 43200 > th dose independent rect. 3 9
178 578.07 radiation 1 14400 < th dose dependent rect. 18 1
181 578.11 humidity 90 43200 > th dose independent rect. 4 7
183 578.15 temperature 15 43200 < th dose dependent rect. 3 1
185 578.30 radiation 1 14400 < th dose dependent rect. 18 5
189 578.39 radiation 40 43200 > th dose dependent rect. 9 3
190 578.40 radiation 40 43200 > th dose independent rect. 10 1
192 578.49 wind 3 43200 > th dose dependent rect. 13 1
226 579.49 radiation 40 43200 > th dose dependent rect. 11 1
246 580.44 radiation 20 43200 > th dose dependent rect. 6 4
366 582.25 humidity 90 43200 > th dose independent sin 4 NA
370 582.32 radiation 20 43200 < th dose independent sin 9 NA
382 582.66 humidity 90 43200 > th dose dependent rect. 16 21
388 582.70 humidity 90 43200 > th dose dependent rect. 19 18
412 583.14 humidity 90 43200 > th dose dependent rect. 21 16
418 583.25 humidity 90 43200 > th dose independent rect. 3 22
431 583.56 radiation 40 43200 > th dose independent rect. 7 4
561 584.24 humidity 90 43200 < th dose independent rect. 22 1
564 584.27 humidity 90 43200 > th dose dependent rect. 19 22
626 584.67 humidity 90 43200 > th dose dependent no NA NA
637 584.89 radiation 40 43200 > th dose dependent sin 9 NA
647 585.02 radiation 10 4320 < th dose independent rect. 17 2
701 585.35 radiation 10 4320 < th dose independent rect. 17 6
713 585.54 humidity 90 43200 > th dose independent rect. 17 20
719 585.63 radiation 20 43200 > th dose dependent sin 10 NA
734 585.69 humidity 90 43200 > th dose independent rect. 19 18
764 586.01 humidity 90 43200 > th dose dependent rect. 11 23
769 586.05 radiation 10 4320 < th dose independent rect. 17 11
824 586.46 temperature 20 1440 > th dose dependent rect. 17 15
827 586.47 humidity 90 43200 < th dose independent rect. 5 21
908 587.45 humidity 90 43200 > th dose independent rect. 22 15