BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0544200 Os10g0544200|AK063669
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0544200 Basic helix-loop-helix dimerisation region bHL... 493 e-140
Os03g0135700 Similar to Transcriptional activator Rb homolo... 209 3e-54
Os01g0928000 Similar to Transcription factor ICE1 (Inducer ... 122 5e-28
Os11g0523700 Similar to Transcription factor ICE1 (Inducer ... 115 5e-26
>Os10g0544200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 380
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/380 (69%), Positives = 265/380 (69%)
Query: 1 MELMDDDGSSSLLEELMAPLRRGTPTTTPEDLWLQAYPMMMSPMCXXXXXXXXXXXXXXN 60
MELMDDDGSSSLLEELMAPLRRGTPTTTPEDLWLQAYPMMMSPMC N
Sbjct: 1 MELMDDDGSSSLLEELMAPLRRGTPTTTPEDLWLQAYPMMMSPMCGDGVMLGDLLVGGGN 60
Query: 61 ARNXXXXXXXXXXXXXXXXXXXXXXXXXHEVSFEFDSIDCLGEVCNPYKRSGGXXXXXXX 120
ARN HEVSFEFDSIDCLGEVCNPYKRSGG
Sbjct: 61 ARNTLASPPPPSFPLPVPLTTTTPCPPLHEVSFEFDSIDCLGEVCNPYKRSGGAVRATAA 120
Query: 121 XXXXXXXMDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMFVFXXXXXXXXS 180
MDP PMFVF S
Sbjct: 121 AQVMVAAMDPRREAASSAVAVAAVEEEERCKARRGAGGGGDSGELAPMFVFGGGGGAAAS 180
Query: 181 VRPRSCRPPQPGAPSKNLMAEXXXXXXLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKE 240
VRPRSCRPPQPGAPSKNLMAE LNDRLSMLRSVVPRISKMDRTSILGDTIGYVKE
Sbjct: 181 VRPRSCRPPQPGAPSKNLMAERRRRKRLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKE 240
Query: 241 LMDRIKNLQVEAATGDXXXXXTENLSMLKLNTLKXXXXXXXGEETPLIRNSTRFEVERRE 300
LMDRIKNLQVEAATGD TENLSMLKLNTLK GEETPLIRNSTRFEVERRE
Sbjct: 241 LMDRIKNLQVEAATGDSSSSSTENLSMLKLNTLKPPPSSSSGEETPLIRNSTRFEVERRE 300
Query: 301 NGSTRIEMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTRD 360
NGSTRIEMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTRD
Sbjct: 301 NGSTRIEMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTRD 360
Query: 361 TEEIKQTLFRSAGYGDGCLI 380
TEEIKQTLFRSAGYGDGCLI
Sbjct: 361 TEEIKQTLFRSAGYGDGCLI 380
>Os03g0135700 Similar to Transcriptional activator Rb homolog (Fragment)
Length = 418
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 157/293 (53%), Gaps = 36/293 (12%)
Query: 94 EFDSIDCLGEVCNPYKRSGGXXXXXXXXXXXXXXMDPXXXXXXXXXXXXXXXXXXXXXXX 153
EF+ DCL EVCNPY+ G + P
Sbjct: 83 EFN-FDCLSEVCNPYRSCGAQLVPSEAASQTQTQLTPLRDAMVAEEETSGDKALLHGGGG 141
Query: 154 XXXXXXXXXXXXXPMFVFXXXXXXXX-----------SVRPRSCRPPQPGAPSKNLMAEX 202
P F+F V PRS G PSKNLMAE
Sbjct: 142 SSS----------PTFMFGGGAGESSEMMAGIRGVGGGVHPRS---KLHGTPSKNLMAER 188
Query: 203 XXXXXLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKELMDRIKNLQVEAATGDXXXXXT 262
LNDRLSMLRS+VP+ISKMDRTSILGDTI YVKEL +RIK L+ E
Sbjct: 189 RRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIGV------TP 242
Query: 263 ENLSMLKLNTLKXXXXXXXGEETPLIRNSTRFEVERRENGSTRIEMACAAIPELLPSTLA 322
E L +L NT+K E L+RNST+F+VE R +G+TRIE+ C A P +L ST++
Sbjct: 243 EELDLL--NTMKDSSSGNNNEM--LVRNSTKFDVENRGSGNTRIEICCPANPGVLLSTVS 298
Query: 323 ALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTRDTEEIKQTLFRSAGYG 375
ALE LG+EIEQCV+SCF DF MQASCLQ+D KR++ T+EIKQTLFRSAGYG
Sbjct: 299 ALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVV-STDEIKQTLFRSAGYG 350
>Os01g0928000 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 381
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 194 PSKNLMAEXXXXXXLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKELMDRIKNL--QVE 251
P+KNLMAE LNDRL MLRSVVP+ISKMDR SILGD I Y+KEL+ RI +L ++E
Sbjct: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 250
Query: 252 AATGDXXXXXTENLSMLKLNTLKXXXXXXXGEETPLIRNS-----TRFEVERRENGSTRI 306
+A + TL+ E P S EV RE + I
Sbjct: 251 SAPSSSLTGPSSASFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEVRMREGHAVNI 310
Query: 307 EMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTRDT----- 361
M CA P +L STL AL++LG+ IEQ VISCF+ FAM D + E RD
Sbjct: 311 HMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAM------DVFRAEQCRDGPGLGP 364
Query: 362 EEIKQTLFRSAG 373
EEIK L SAG
Sbjct: 365 EEIKTVLLHSAG 376
>Os11g0523700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 524
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 102/200 (51%), Gaps = 32/200 (16%)
Query: 194 PSKNLMAEXXXXXXLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKELMDRIKNLQVE-- 251
P+KNLMAE LNDRL MLRSVVP+ISKMDR SILGD I Y+KEL+ +I +LQ E
Sbjct: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
Query: 252 --AATGDXXXXXTE----------NLSMLKLNTLKXXXXXXXGEETPLIRNSTRFEVERR 299
AT T S +K G++ R EV R
Sbjct: 394 SSPATSSLPPTPTSFHPLTPTLPTLPSRIKEEICPSALPSPTGQQ-------PRVEVRLR 446
Query: 300 ENGSTRIEMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTR 359
E + I M CA P LL S + A+E LG++++Q VISCF+ F + D K E +
Sbjct: 447 EGRAVNIHMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTL------DIFKAEQCK 500
Query: 360 DT-----EEIKQTLFRSAGY 374
D EEIK L +SAG+
Sbjct: 501 DGPGLLPEEIKAVLMQSAGF 520
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,862,647
Number of extensions: 265033
Number of successful extensions: 670
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 4
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)