Os03g0135700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional activator Rb homolog (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os03g0135700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional activator Rb homolog (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 415.6 | 0.958 | 4.05 | -3.22 | 1.05 | -0.338 | -1.21 | -4.66 | -0.71 | 7.53 | 18.17 | 4416 | -- | -- |
| 428.81 | 0.972 | 3.88 | -2.05 | 0.992 | -0.91 | -1.35 | -- | -0.45 | 8.08 | 28.72 | 2149 | -- | -- |
| 419.6 | 0.954 | 4.05 | -3.24 | 1.05 | -0.362 | -- | -4.72 | -0.707 | 7.48 | 17.53 | 4391 | -- | -- |
| 432.5 | 0.969 | 3.88 | -2 | 0.797 | -0.742 | -- | -- | -0.449 | 7.77 | 27.7 | 634 | -- | -- |
| 478.06 | 1.02 | 4.06 | -3.11 | -- | -0.508 | -- | -4.54 | -0.651 | -- | 16.91 | 4844 | -- | -- |
| 437.94 | 0.981 | 3.87 | -2.13 | 1.05 | -- | -1.3 | -- | -0.434 | 7.6 | -- | -- | -- | -- |
| 442.64 | 0.985 | 3.87 | -2.16 | 1.05 | -- | -- | -- | -0.432 | 7.57 | -- | -- | -- | -- |
| 454.58 | 0.993 | 3.87 | -1.91 | -- | -1.28 | -- | -- | -0.314 | -- | 24.8 | 588 | -- | -- |
| 531.28 | 1.07 | 3.79 | -- | 0.976 | -0.958 | -- | -- | -0.0752 | 7.65 | 24.1 | 1659 | -- | -- |
| 501.37 | 1.05 | 3.9 | -2.15 | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
| 565.75 | 1.11 | 3.82 | -- | 1.03 | -- | -- | -- | -0.191 | 7.72 | -- | -- | -- | -- |
| 546.06 | 1.09 | 3.81 | -- | -- | -1.61 | -- | -- | -0.0448 | -- | 24.1 | 629 | -- | -- |
| 622.87 | 1.16 | 3.84 | -- | -- | -- | -- | -- | -0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 405.85 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 406.06 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 11 |
| 3 | 406.35 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 5 | 406.84 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 9 |
| 7 | 407.89 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 8 | 407.99 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 9 | 408.28 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 1 |
| 11 | 408.33 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 12 | 408.36 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 18 | 408.66 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 25 | 409.03 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 38 | 409.67 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 50 | 410.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 57 | 410.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 58 | 410.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 61 | 410.38 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 7 |
| 66 | 410.62 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 76 | 410.80 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 7 |
| 145 | 412.00 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 148 | 412.07 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 151 | 412.16 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 3 |
| 156 | 412.24 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 162 | 412.28 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 167 | 412.36 | radiation | 30 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 169 | 412.37 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 181 | 412.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 204 | 412.93 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 220 | 413.35 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 229 | 413.64 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 239 | 413.84 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 259 | 414.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 267 | 414.12 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 273 | 414.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 274 | 414.26 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 275 | 414.26 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 276 | 414.26 | radiation | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 277 | 414.27 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 293 | 414.32 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 299 | 414.34 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 306 | 414.36 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 308 | 414.37 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 311 | 414.38 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 323 | 414.43 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 17 |
| 327 | 414.44 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 334 | 414.45 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 346 | 414.49 | temperature | 30 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 363 | 414.54 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 367 | 414.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 391 | 414.61 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 10 |
| 405 | 414.64 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 413 | 414.65 | temperature | 30 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 414 | 414.65 | radiation | 40 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 418 | 414.66 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 422 | 414.67 | temperature | 10 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 439 | 414.69 | temperature | 30 | 43200 | < th | dose dependent | rect. | 10 | 10 |
| 454 | 414.71 | temperature | 30 | 43200 | < th | dose dependent | rect. | 10 | 8 |
| 467 | 414.72 | temperature | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 504 | 414.76 | temperature | 30 | 43200 | < th | dose dependent | sin | 20 | NA |
| 506 | 414.76 | temperature | 30 | 43200 | < th | dose dependent | rect. | 15 | 5 |
| 659 | 414.84 | temperature | 10 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 709 | 414.86 | temperature | 10 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 714 | 414.86 | temperature | 30 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 724 | 414.87 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 809 | 414.89 | temperature | 10 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 826 | 414.89 | temperature | 15 | 43200 | > th | dose dependent | rect. | 15 | 13 |
| 839 | 414.89 | temperature | 10 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 858 | 414.90 | temperature | 15 | 43200 | > th | dose dependent | sin | 17 | NA |
| 862 | 414.90 | temperature | 15 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 863 | 414.90 | temperature | 15 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 977 | 414.92 | temperature | 30 | 43200 | < th | dose dependent | no | NA | NA |
| 981 | 414.92 | temperature | 15 | 43200 | > th | dose dependent | rect. | 19 | 3 |