BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0135700 Os03g0135700|AK103779
(418 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0135700 Similar to Transcriptional activator Rb homolo... 784 0.0
Os10g0544200 Basic helix-loop-helix dimerisation region bHL... 216 3e-56
Os01g0928000 Similar to Transcription factor ICE1 (Inducer ... 119 6e-27
Os11g0523700 Similar to Transcription factor ICE1 (Inducer ... 114 2e-25
Os03g0725800 Basic helix-loop-helix dimerisation region bHL... 69 5e-12
Os03g0229100 69 5e-12
>Os03g0135700 Similar to Transcriptional activator Rb homolog (Fragment)
Length = 418
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/418 (92%), Positives = 387/418 (92%)
Query: 1 MELDEESFLDELMSLRRDGSAPWQAPPYPXXXXXXXXXXXXXSDLLFYXXXXXXXXXXXX 60
MELDEESFLDELMSLRRDGSAPWQAPPYP SDLLFY
Sbjct: 1 MELDEESFLDELMSLRRDGSAPWQAPPYPGGGGGGGGGGMMMSDLLFYGGDGGSAEARGG 60
Query: 61 MDASPFQELASMAAPPPQHPHEEFNFDCLSEVCNPYRSCGAQLVPSEAASQTQTQLTPLR 120
MDASPFQELASMAAPPPQHPHEEFNFDCLSEVCNPYRSCGAQLVPSEAASQTQTQLTPLR
Sbjct: 61 MDASPFQELASMAAPPPQHPHEEFNFDCLSEVCNPYRSCGAQLVPSEAASQTQTQLTPLR 120
Query: 121 DAMVAEEETSGDKALLHGGGGSSSPTFMFGGGAGESSEMMAGIRGVGGGVHPRSKLHGTP 180
DAMVAEEETSGDKALLHGGGGSSSPTFMFGGGAGESSEMMAGIRGVGGGVHPRSKLHGTP
Sbjct: 121 DAMVAEEETSGDKALLHGGGGSSSPTFMFGGGAGESSEMMAGIRGVGGGVHPRSKLHGTP 180
Query: 181 SKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIGV 240
SKNLMAE LNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIGV
Sbjct: 181 SKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIGV 240
Query: 241 TPEELDLLNTMKDSSSGNNNEMLVRNSTKFDVENRGSGNTRIEICCPANPGVLLSTVSAL 300
TPEELDLLNTMKDSSSGNNNEMLVRNSTKFDVENRGSGNTRIEICCPANPGVLLSTVSAL
Sbjct: 241 TPEELDLLNTMKDSSSGNNNEMLVRNSTKFDVENRGSGNTRIEICCPANPGVLLSTVSAL 300
Query: 301 EVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQTLFRSAGYGGRNYSRSSTI 360
EVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQTLFRSAGYGGRNYSRSSTI
Sbjct: 301 EVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQTLFRSAGYGGRNYSRSSTI 360
Query: 361 YEFIFISSGSTSFLNTPESKLKICSSIVSFAFVNRYGNRPCDLSNIGFELNAKVPIVC 418
YEFIFISSGSTSFLNTPESKLKICSSIVSFAFVNRYGNRPCDLSNIGFELNAKVPIVC
Sbjct: 361 YEFIFISSGSTSFLNTPESKLKICSSIVSFAFVNRYGNRPCDLSNIGFELNAKVPIVC 418
>Os10g0544200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 380
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 179/293 (61%), Gaps = 36/293 (12%)
Query: 83 EFN-FDCLSEVCNPYRSCGAQLVPSEAASQTQTQLTPLRDAMVAEEETSGDKALLH---- 137
EF+ DCL EVCNPY+ G + + AA + P R+A + + +
Sbjct: 94 EFDSIDCLGEVCNPYKRSGGAVRATAAAQVMVAAMDPRREAASSAVAVAAVEEEERCKAR 153
Query: 138 ------GGGGSSSPTFMFGGGAGESSEMMAGIRGVGGGVHPRS---KLHGTPSKNLMAEX 188
G G +P F+FGGG G ++ V PRS G PSKNLMAE
Sbjct: 154 RGAGGGGDSGELAPMFVFGGGGGAAA-----------SVRPRSCRPPQPGAPSKNLMAER 202
Query: 189 XXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIGV------TP 242
LNDRLSMLRS+VP+ISKMDRTSILGDTI YVKEL +RIK L+ E +
Sbjct: 203 RRRKRLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKELMDRIKNLQVEAATGDSSSSST 262
Query: 243 EELDLL--NTMKD--SSSGNNNEMLVRNSTKFDVENRGSGNTRIEICCPANPGVLLSTVS 298
E L +L NT+K SSS L+RNST+F+VE R +G+TRIE+ C A P +L ST++
Sbjct: 263 ENLSMLKLNTLKPPPSSSSGEETPLIRNSTRFEVERRENGSTRIEMACAAIPELLPSTLA 322
Query: 299 ALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVV-STDEIKQTLFRSAGYG 350
ALE LG+EIEQCV+SCF DF MQASCLQ+D KR++ T+EIKQTLFRSAGYG
Sbjct: 323 ALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTRDTEEIKQTLFRSAGYG 375
>Os01g0928000 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 381
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 180 PSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIG 239
P+KNLMAE LNDRL MLRS+VPKISKMDR SILGD I+Y+KEL +RI L E+
Sbjct: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 250
Query: 240 VTPEELDLLNTMKDSSS--------------GNNNEMLVRNS--------TKFDVENRGS 277
P +++ SS G E L S +V R
Sbjct: 251 SAPS-----SSLTGPSSASFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEVRMREG 305
Query: 278 GNTRIEICCPANPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTD 337
I + C PG+L+ST+ AL+ LGL IEQ V+SCF+ F M ++ + +
Sbjct: 306 HAVNIHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCRDGPGLGPE 365
Query: 338 EIKQTLFRSAG 348
EIK L SAG
Sbjct: 366 EIKTVLLHSAG 376
>Os11g0523700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 524
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 180 PSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIG 239
P+KNLMAE LNDRL MLRS+VPKISKMDR SILGD I+Y+KEL ++I L+ E+
Sbjct: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
Query: 240 VTPEELDLLNT-----------------MKDSSSGNNNEMLVRNSTKFDVENRGSGNTRI 282
+P L T +K+ + + +V R I
Sbjct: 394 SSPATSSLPPTPTSFHPLTPTLPTLPSRIKEEICPSALPSPTGQQPRVEVRLREGRAVNI 453
Query: 283 EICCPANPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQT 342
+ C PG+LLS + A+E LGL+++Q V+SCF+ F + ++ + +EIK
Sbjct: 454 HMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTLDIFKAEQCKDGPGLLPEEIKAV 513
Query: 343 LFRSAGY 349
L +SAG+
Sbjct: 514 LMQSAGF 520
>Os03g0725800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 359
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 13/173 (7%)
Query: 182 KNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIGVT 241
++++AE L+ R L IVP + KMD+ S+LGD I YVK+L +++K LEEE
Sbjct: 181 EHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLEEEARRR 240
Query: 242 PEELDLLNTMKDSSSGNNNEMLVRNSTKFD----------VENRGSGNT-RIEICCPANP 290
P E +L +K S +++ FD +E R S T ++I C
Sbjct: 241 PVEAAVL--VKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRK 298
Query: 291 GVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQTL 343
G L++ +S +E +GL I V F+ + + + G+ +S +I + L
Sbjct: 299 GALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKL 351
>Os03g0229100
Length = 451
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 165 GVGGGVHP---RSKLHGTPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTI 221
GVG P RS+ ++++AE L + L +IVP + K D+ S+LG TI
Sbjct: 267 GVGVFQQPPERRSRPPANAQEHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTI 326
Query: 222 DYVKELTERIKTLEEEIGVTPE-----ELDLLNTMKDSSSGNNNEMLVRNSTKF---DVE 273
DYVK+L E++K LEE T E E T+ D G+ + S+ VE
Sbjct: 327 DYVKQLEEKVKALEEGSRRTAEPTTAFESKCRITVDDDDGGSASSGTDDGSSSSSSPTVE 386
Query: 274 NRGSGNT-RIEICCPANPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCL 325
GNT ++ICC G+L+ +S LE GL I V F+D SCL
Sbjct: 387 ASIHGNTVLLKICCKERRGLLVMILSELEKQGLSIINTSVVPFTD-----SCL 434
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,191,515
Number of extensions: 606389
Number of successful extensions: 3540
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 3532
Number of HSP's successfully gapped: 8
Length of query: 418
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 315
Effective length of database: 11,657,759
Effective search space: 3672194085
Effective search space used: 3672194085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)