Os03g0725800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os03g0725800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.31 | 0.515 | 9.89 | 0.068 | 1.26 | -2.99 | -1.04 | -2.09 | 0.57 | 16.5 | 24.63 | 4570 | -- | -- |
| 123.09 | 0.517 | 9.95 | -0.234 | 1.26 | -2.62 | -1.07 | -- | 0.527 | 16.5 | 26.27 | 4531 | -- | -- |
| 123.17 | 0.517 | 9.89 | 0.0731 | 1.26 | -2.99 | -- | -2.12 | 0.567 | 16.6 | 24.66 | 4572 | -- | -- |
| 126.11 | 0.523 | 9.95 | -0.239 | 1.25 | -2.62 | -- | -- | 0.522 | 16.6 | 26.36 | 4549 | -- | -- |
| 156.64 | 0.583 | 9.93 | 0.139 | -- | -3.01 | -- | 0.8 | 0.566 | -- | 29.54 | 266 | -- | -- |
| 233.67 | 0.717 | 9.81 | 1.06 | 1.2 | -- | -0.963 | -- | 1.17 | 16.6 | -- | -- | -- | -- |
| 236.07 | 0.72 | 9.81 | 1.06 | 1.2 | -- | -- | -- | 1.16 | 16.7 | -- | -- | -- | -- |
| 156.9 | 0.583 | 9.93 | 0.287 | -- | -2.97 | -- | -- | 0.53 | -- | 29.25 | 270 | -- | -- |
| 127.02 | 0.525 | 9.94 | -- | 1.26 | -2.47 | -- | -- | 0.593 | 16.6 | 27.27 | 4529 | -- | -- |
| 312.18 | 0.826 | 9.8 | 1.01 | -- | -- | -- | -- | 1.13 | -- | -- | -- | -- | -- |
| 265.56 | 0.762 | 9.84 | -- | 1.18 | -- | -- | -- | 1.04 | 16.7 | -- | -- | -- | -- |
| 158.93 | 0.587 | 9.94 | -- | -- | -3 | -- | -- | 0.491 | -- | 28.92 | 249 | -- | -- |
| 339.21 | 0.86 | 9.82 | -- | -- | -- | -- | -- | 1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 5 | 120.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 13 | 120.78 | temperature | 25 | 4320 | < th | dose dependent | sin | 4 | NA |
| 15 | 120.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 56 | 121.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 71 | 121.35 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 20 |
| 140 | 121.63 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 156 | 121.68 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 165 | 121.73 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 254 | 122.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 260 | 122.91 | temperature | 15 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 283 | 123.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 291 | 123.16 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 292 | 123.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 294 | 123.16 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 10 |
| 298 | 123.18 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 12 |
| 305 | 123.21 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 7 |
| 325 | 123.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 406 | 123.60 | temperature | 15 | 4320 | > th | dose dependent | sin | 8 | NA |
| 409 | 123.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 494 | 123.94 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 542 | 124.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 567 | 124.23 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 646 | 124.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 666 | 124.51 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 735 | 124.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 829 | 124.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 831 | 124.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 14 |
| 833 | 124.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 917 | 125.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 962 | 125.22 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 3 | 2 |