BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0725800 Os03g0725800|AK120539
(359 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0725800 Basic helix-loop-helix dimerisation region bHL... 491 e-139
Os03g0229100 149 4e-36
Os12g0632600 141 8e-34
Os03g0671800 Basic helix-loop-helix dimerisation region bHL... 140 1e-33
Os10g0104300 113 2e-25
Os03g0671000 105 6e-23
Os10g0575000 Similar to Transcription factor MYC7E (Fragment) 72 7e-13
Os07g0211500 71 1e-12
Os06g0480200 71 2e-12
Os01g0235700 Similar to BHLH transcription factor (Fragment) 70 2e-12
Os01g0705700 Similar to Transcription factor ICE1 (Inducer ... 68 9e-12
>Os03g0725800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 359
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/359 (71%), Positives = 256/359 (71%)
Query: 1 MATQWFSNMVMDEPSFFHQWQSDGLLEQYTEQQIXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MATQWFSNMVMDEPSFFHQWQSDGLLEQYTEQQI
Sbjct: 1 MATQWFSNMVMDEPSFFHQWQSDGLLEQYTEQQIAVAFGQAGEADAAAAAAAMMVQQQQY 60
Query: 61 XXXXXXXHRPRKAAKVNTSWDSCITEQGSPADSSSPTILXXXXXXXXXXXXXXXXXXXXX 120
HRPRKAAKVNTSWDSCITEQGSPADSSSPTIL
Sbjct: 61 AAAAAAEHRPRKAAKVNTSWDSCITEQGSPADSSSPTILSFGGHADAAAAAAFASAGQAQ 120
Query: 121 XXXXXXXXXXXXLKPKQELDAAAAPFSQARPVKRSYXXXXXXXXXXXXXXXXXXXXXQNQ 180
LKPKQELDAAAAPFSQARPVKRSY QNQ
Sbjct: 121 SAPYYGGASAAALKPKQELDAAAAPFSQARPVKRSYDAMVAADVAKAPAAAASRPASQNQ 180
Query: 181 EHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGXXXXXXXX 240
EHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKG
Sbjct: 181 EHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLEEEARRR 240
Query: 241 XXXXXXXXKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRKGA 300
KKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRKGA
Sbjct: 241 PVEAAVLVKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRKGA 300
Query: 301 LITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQAFKLSL 359
LITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQAFKLSL
Sbjct: 301 LITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQAFKLSL 359
>Os03g0229100
Length = 451
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 104/157 (66%)
Query: 180 QEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGXXXXXXX 239
QEH++AERKRREKL Q+F+AL+ IVPGLKK DK S+LG I YVKQL+++VK
Sbjct: 286 QEHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQLEEKVKALEEGSRR 345
Query: 240 XXXXXXXXXKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRKG 299
K +++ DDDDG S D G +++ P +EA + TVL+KI C+ R+G
Sbjct: 346 TAEPTTAFESKCRITVDDDDGGSASSGTDDGSSSSSSPTVEASIHGNTVLLKICCKERRG 405
Query: 300 ALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATA 336
L+ LSE+E GL+I+NT+V+PFT S L+ITI A A
Sbjct: 406 LLVMILSELEKQGLSIINTSVVPFTDSCLNITITAKA 442
>Os12g0632600
Length = 338
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 103/161 (63%), Gaps = 16/161 (9%)
Query: 180 QEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGXXXXXXX 239
Q+HI+AER+RREK++QRFI LS ++PGLKKMDKA++LGDA+KYVK+LQ++VK
Sbjct: 166 QDHIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQEKVKTLEEEDGG 225
Query: 240 XXXXXXXXXKKS----QLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCE 295
K S Q +A D DG +PEIE RV ER+VLV++ C
Sbjct: 226 GRPAAMVVRKSSCSGRQSAAGDGDGE------------GRVPEIEVRVWERSVLVRVQCG 273
Query: 296 NRKGALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATA 336
N +G L+ LSEVE + L I +T+V+PF +S++ ITI A A
Sbjct: 274 NSRGLLVRLLSEVEELRLGITHTSVMPFPASTVIITITAKA 314
>Os03g0671800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 385
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 115/183 (62%), Gaps = 6/183 (3%)
Query: 180 QEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGXXXXXXX 239
QEHI+AERKRREK++QRFI LS ++PGLKKMDKA++L DA++YVK++Q+++
Sbjct: 191 QEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEKLSELEQHQNG 250
Query: 240 XXXXXXXXXKKSQLSADDDDG-----SSCDENFDGGEATAGLPEIEARVSERTVLVKIHC 294
K ++ D G S+ + G A + LPEIEA++S V+V+IH
Sbjct: 251 GVESAILLKKPCIATSSSDGGCPAASSAVAGSSSSGTARSSLPEIEAKISHGNVMVRIHG 310
Query: 295 ENR-KGALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQ 353
EN KG+L+ L+ VE + L I +TNV+PF++ + ITIMA + S++ +DIV KLN
Sbjct: 311 ENNGKGSLVRLLAAVEGLHLGITHTNVMPFSACTAIITIMAKVEDGVSVTAEDIVGKLNT 370
Query: 354 AFK 356
+
Sbjct: 371 VLQ 373
>Os10g0104300
Length = 325
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 180 QEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGXXXXXXX 239
QEH++AERKRREK+ Q+F L+ IVP + K DK SVLG I+YV L+++VK
Sbjct: 155 QEHVIAERKRREKMHQQFTTLASIVPEITKTDKVSVLGSTIEYVHHLRERVKILQDIQSM 214
Query: 240 XXXXXXXXXKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRKG 299
+S+ GS DE+ DG + ++EA + TVL+++ C +KG
Sbjct: 215 GSTQPPISDARSRA------GSGDDEDDDGNNNEVEI-KVEANLQGTTVLLRVVCPEKKG 267
Query: 300 ALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQAFK 356
LI L+E+E +GL+ MNTNV+PF SSL+ITI A +N S + ++VK L +
Sbjct: 268 VLIKLLTELEKLGLSTMNTNVVPFADSSLNITITAQI-DNASCTTVELVKNLKSTLR 323
>Os03g0671000
Length = 289
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 33/177 (18%)
Query: 181 EHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGXXXXXXXX 240
EH++AERKRREK++QRF+ LS ++P LKKMDKA++L DA Y+++LQ+++K
Sbjct: 130 EHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALEEQAAAR 189
Query: 241 XXXXXXXXKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVS--ERTVLVKIHCENRK 298
+ + PEIE R S V+V+IHCEN +
Sbjct: 190 VTEAAMATPSPARAMNH---------------LPVPPEIEVRCSPTNNVVMVRIHCENGE 234
Query: 299 GALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQAF 355
G ++ L+EVE I L I+N NV E F++ ++IV +LN A
Sbjct: 235 GVIVRILAEVEEIHLRIINANV----------------EEGFTVKAEEIVGRLNSAL 275
>Os10g0575000 Similar to Transcription factor MYC7E (Fragment)
Length = 699
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 182 HILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGXXXXXXXXX 241
H+ AER+RREKL+QRF AL +VP + KMDKAS+LGDAI Y+ +L+ ++
Sbjct: 525 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQ 584
Query: 242 XXXXXXXKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRK--- 298
K+ D + G A EIEA++ ++++ C R
Sbjct: 585 SQMESLKKER-----DARPPAPSGGGGDGGARCHAVEIEAKILGLEAMIRVQCHKRNHPA 639
Query: 299 GALITALSEVE 309
L+TAL E++
Sbjct: 640 ARLMTALRELD 650
>Os07g0211500
Length = 658
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 43/50 (86%)
Query: 182 HILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVK 231
H+L ER+RREKL+++FI L +VP + KMDKAS+LGD I+YVKQL+++++
Sbjct: 476 HVLKERRRREKLNEKFIILRSLVPFMTKMDKASILGDTIEYVKQLRNRIQ 525
>Os06g0480200
Length = 192
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/32 (87%), Positives = 30/32 (93%)
Query: 1 MATQWFSNMVMDEPSFFHQWQSDGLLEQYTEQ 32
M TQWFSNMVMDEPSFFHQW SDGLLEQYT++
Sbjct: 89 MTTQWFSNMVMDEPSFFHQWHSDGLLEQYTKR 120
>Os01g0235700 Similar to BHLH transcription factor (Fragment)
Length = 617
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 40/50 (80%)
Query: 182 HILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVK 231
H+ AER+RREKL+QRF AL +VP + KMDKAS+LGDAI Y+ LQ ++K
Sbjct: 464 HVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLK 513
>Os01g0705700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 460
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 42/51 (82%)
Query: 182 HILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKG 232
H+ AER+RREKL+QRF AL +VP + KMDKAS+L DAI Y+++L+ +++G
Sbjct: 315 HVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLRG 365
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,093,061
Number of extensions: 217165
Number of successful extensions: 706
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 12
Length of query: 359
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 257
Effective length of database: 11,709,973
Effective search space: 3009463061
Effective search space used: 3009463061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)