Os01g0705700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116).
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Os01g0705700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 475.34 | 1.02 | 8.33 | -3.26 | 174 | -171 | 387 | -387 | 0.26 | 3.27 | 9 | 271 | 5 | -- |
| 506.8 | 1.06 | 9.23 | -1.82 | 17.1 | -14.9 | -1.96 | -- | 0.205 | 1.56 | 9 | 271 | 5 | -- |
| 504.61 | 1.05 | 9.23 | -1.81 | 16.9 | -14.7 | -- | -2.05 | 0.204 | 1.57 | 9 | 271 | 5 | -- |
| 522.23 | 1.07 | 9.23 | -1.76 | 17 | -14.7 | -- | -- | 0.216 | 1.56 | 9 | 271 | 5 | -- |
| 562.73 | 1.11 | 9.1 | -1.86 | -- | 3.12 | -- | -0.307 | 0.174 | -- | 8.28 | 2854 | 1.37 | -- |
| 546.63 | 1.1 | 9.06 | -1.84 | 3.16 | -- | -0.85 | -- | 0.182 | 4.15 | -- | -- | -- | -- |
| 548.57 | 1.1 | 9.06 | -1.83 | 3.16 | -- | -- | -- | 0.187 | 4.2 | -- | -- | -- | -- |
| 562.99 | 1.11 | 9.1 | -1.86 | -- | 3.12 | -- | -- | 0.176 | -- | 8.28 | 2854 | 1.37 | -- |
| 559.86 | 1.1 | 9.17 | -- | 16.6 | -14.3 | -- | -- | 0.453 | 1.58 | 7.32 | 107 | 5.9 | -- |
| 1088.32 | 1.54 | 9.08 | -1.7 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 636.95 | 1.18 | 9.02 | -- | 3.12 | -- | -- | -- | 0.391 | 4.21 | -- | -- | -- | -- |
| 637.25 | 1.18 | 9.05 | -- | -- | 3.12 | -- | -- | 0.391 | -- | 9.743 | 17346 | 1.91 | -- |
| 1164.95 | 1.59 | 9.04 | -- | -- | -- | -- | -- | 0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 471.77 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 2 | 475.35 | wind | 9.0 | 270 | < th | dose independent | sin | 11 | NA |
| 3 | 475.93 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 7 | 478.59 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 9 | 478.93 | wind | 9.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 11 | 479.37 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 13 | 479.67 | wind | 9.0 | 720 | < th | dose independent | rect. | 5 | 20 |
| 18 | 480.98 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 24 | 482.04 | wind | 9.0 | 720 | < th | dose independent | rect. | 5 | 18 |
| 25 | 482.13 | wind | 9.0 | 10 | < th | dose independent | sin | 10 | NA |
| 27 | 482.26 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 32 | 482.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 39 | 483.22 | wind | 3.0 | 30 | < th | dose dependent | rect. | 3 | 8 |
| 47 | 483.92 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 51 | 484.15 | wind | 9.0 | 720 | < th | dose independent | sin | 23 | NA |
| 54 | 484.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 57 | 484.31 | wind | 3.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 61 | 484.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 62 | 484.61 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 63 | 484.62 | wind | 1.0 | 720 | > th | dose independent | rect. | 4 | 4 |
| 71 | 484.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 72 | 484.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 75 | 484.89 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 79 | 485.02 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 4 |
| 82 | 485.19 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 87 | 485.32 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 100 | 485.85 | wind | 9.0 | 720 | < th | dose independent | rect. | 11 | 6 |
| 114 | 486.33 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 12 |
| 115 | 486.33 | wind | 1.0 | 720 | > th | dose independent | rect. | 4 | 13 |
| 118 | 486.44 | wind | 9.0 | 720 | < th | dose independent | sin | 3 | NA |
| 125 | 486.50 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 139 | 486.98 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 165 | 487.61 | wind | 9.0 | 720 | < th | dose independent | rect. | 3 | 15 |
| 183 | 488.20 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 187 | 488.28 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 189 | 488.31 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 193 | 488.36 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 203 | 488.48 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 210 | 488.63 | wind | 1.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 222 | 489.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 240 | 489.53 | wind | 9.0 | 90 | < th | dose dependent | rect. | 13 | 13 |
| 259 | 489.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 277 | 490.16 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 279 | 490.28 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 309 | 490.87 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 11 |
| 316 | 491.00 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 325 | 491.18 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 328 | 491.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 330 | 491.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 336 | 491.33 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 339 | 491.36 | wind | 9.0 | 270 | > th | dose independent | sin | 11 | NA |
| 346 | 491.44 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 360 | 491.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 363 | 491.63 | wind | 9.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 376 | 491.85 | wind | 7.0 | 90 | < th | dose independent | rect. | 21 | 6 |
| 411 | 492.37 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 415 | 492.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 416 | 492.43 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 417 | 492.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 429 | 492.55 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 432 | 492.55 | wind | 9.0 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 447 | 492.73 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 456 | 492.80 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 469 | 492.86 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 479 | 492.89 | wind | 3.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 491 | 493.02 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 492 | 493.02 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 512 | 493.31 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 523 | 493.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 531 | 493.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 540 | 493.57 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 558 | 493.72 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 559 | 493.72 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 6 |
| 560 | 493.72 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 563 | 493.72 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 564 | 493.72 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 6 |
| 569 | 493.72 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 570 | 493.72 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 571 | 493.72 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 605 | 493.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 608 | 493.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 615 | 493.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 616 | 493.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 617 | 493.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 621 | 494.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 11 |
| 623 | 494.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 628 | 494.07 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 6 |
| 630 | 494.07 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 640 | 494.13 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 10 |
| 641 | 494.16 | wind | 9.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 642 | 494.18 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 645 | 494.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 646 | 494.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 648 | 494.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 649 | 494.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 652 | 494.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 653 | 494.19 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 655 | 494.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 660 | 494.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 661 | 494.19 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 665 | 494.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 691 | 494.46 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 697 | 494.48 | wind | 7.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 699 | 494.48 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 701 | 494.48 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 702 | 494.48 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 705 | 494.48 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 706 | 494.48 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 711 | 494.48 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 712 | 494.48 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 721 | 494.52 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 722 | 494.52 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 735 | 494.59 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 738 | 494.59 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 741 | 494.59 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 749 | 494.60 | wind | 1.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 752 | 494.61 | radiation | 1.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 754 | 494.62 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 756 | 494.63 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 814 | 495.16 | wind | 9.0 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 816 | 495.18 | wind | 7.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 820 | 495.20 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 823 | 495.22 | wind | 9.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 836 | 495.24 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 843 | 495.28 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 854 | 495.36 | wind | 9.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 882 | 495.43 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 907 | 495.48 | wind | 9.0 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 911 | 495.49 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 916 | 495.51 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 919 | 495.51 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 925 | 495.54 | radiation | 1.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 933 | 495.57 | wind | 1.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 939 | 495.63 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 946 | 495.68 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 948 | 495.71 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 960 | 495.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 961 | 495.72 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 981 | 495.78 | wind | 9.0 | 10 | > th | dose independent | sin | 11 | NA |