BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0705700 Os01g0705700|AK064946
(460 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0705700 Similar to Transcription factor ICE1 (Inducer ... 805 0.0
Os01g0235700 Similar to BHLH transcription factor (Fragment) 152 4e-37
Os10g0575000 Similar to Transcription factor MYC7E (Fragment) 135 5e-32
Os09g0519100 Similar to BHLH transcription factor (Fragment) 87 3e-17
Os08g0543700 82 6e-16
Os03g0671000 77 2e-14
Os07g0211500 74 2e-13
Os01g0928000 Similar to Transcription factor ICE1 (Inducer ... 70 2e-12
Os03g0229100 70 4e-12
Os11g0523700 Similar to Transcription factor ICE1 (Inducer ... 69 5e-12
Os01g0577300 Similar to Transcriptional activator Rb homolo... 69 1e-11
Os03g0671800 Basic helix-loop-helix dimerisation region bHL... 68 1e-11
Os03g0725800 Basic helix-loop-helix dimerisation region bHL... 68 1e-11
>Os01g0705700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 460
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/460 (90%), Positives = 417/460 (90%)
Query: 1 MSWSETDAALFAAVLGHDAAHHLATTPPHLDAPEGSPSSAELQASLHDLVERQGGAWTYG 60
MSWSETDAALFAAVLGHDAAHHLATTPPHLDAPEGSPSSAELQASLHDLVERQGGAWTYG
Sbjct: 1 MSWSETDAALFAAVLGHDAAHHLATTPPHLDAPEGSPSSAELQASLHDLVERQGGAWTYG 60
Query: 61 IFWQEXXXXXXXXXXXXXXVLGWGDGHCRDGAGHGEVGAAERSVARKRVLLRLHXXXXXX 120
IFWQE VLGWGDGHCRDGAGHGEVGAAERSVARKRVLLRLH
Sbjct: 61 IFWQESRGAGAASGRAARAVLGWGDGHCRDGAGHGEVGAAERSVARKRVLLRLHALYGGG 120
Query: 121 XXXXXXXXXRLDRVTGAEMYFLASMYFSFPEGSGGPGRALASGRHAWADVDPHPSGSGSA 180
RLDRVTGAEMYFLASMYFSFPEGSGGPGRALASGRHAWADVDPHPSGSGSA
Sbjct: 121 DEDGADYALRLDRVTGAEMYFLASMYFSFPEGSGGPGRALASGRHAWADVDPHPSGSGSA 180
Query: 181 PGWYVRSSLAQSAGLRTVVFLPCKGGVLELGSVVAIRETPEVLRAIQSAMRAVPAPPEDF 240
PGWYVRSSLAQSAGLRTVVFLPCKGGVLELGSVVAIRETPEVLRAIQSAMRAVPAPPEDF
Sbjct: 181 PGWYVRSSLAQSAGLRTVVFLPCKGGVLELGSVVAIRETPEVLRAIQSAMRAVPAPPEDF 240
Query: 241 MRIFGKDLSPGRPSQPMGCDAPWTPRLVVQTTPVRPAKSLDFSKANVQEQAGGQERRPRK 300
MRIFGKDLSPGRPSQPMGCDAPWTPRLVVQTTPVRPAKSLDFSKANVQEQAGGQERRPRK
Sbjct: 241 MRIFGKDLSPGRPSQPMGCDAPWTPRLVVQTTPVRPAKSLDFSKANVQEQAGGQERRPRK 300
Query: 301 RGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELE 360
RGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELE
Sbjct: 301 RGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELE 360
Query: 361 ARLRGDAPVPARADGPAVEVKAMQDEVVLRVTTPLDEHPISRVFHAMRESQIXXXXXXXX 420
ARLRGDAPVPARADGPAVEVKAMQDEVVLRVTTPLDEHPISRVFHAMRESQI
Sbjct: 361 ARLRGDAPVPARADGPAVEVKAMQDEVVLRVTTPLDEHPISRVFHAMRESQISVVASDVA 420
Query: 421 XXXXXXTHTLMVRSAGPERLTAETVLAAMSRGVSVTTPSP 460
THTLMVRSAGPERLTAETVLAAMSRGVSVTTPSP
Sbjct: 421 VSDDAVTHTLMVRSAGPERLTAETVLAAMSRGVSVTTPSP 460
>Os01g0235700 Similar to BHLH transcription factor (Fragment)
Length = 617
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 101/158 (63%), Gaps = 12/158 (7%)
Query: 306 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLR- 364
ANGREEPLNHVEAERQRREKLNQRFYALRAVVP ISKMDKASLL DAI YI +L+ +L+
Sbjct: 455 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLKE 514
Query: 365 -----------GDAPVPARADGPAVEVKAMQDEVVLRVTTPLDEHPISRVFHAMRESQIX 413
G R P V+++ +QDEV++RV +P++ HP+ +F A E+++
Sbjct: 515 MEVERERLIESGMIDPRDRTPRPEVDIQVVQDEVLVRVMSPMESHPVRAIFQAFEEAEVH 574
Query: 414 XXXXXXXXXXXXXTHTLMVRSAGPERLTAETVLAAMSR 451
H+ +++ G E+ T E V+AAMSR
Sbjct: 575 AGESKITSNNGTAVHSFIIKCPGAEQQTREKVIAAMSR 612
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 140/280 (50%), Gaps = 41/280 (14%)
Query: 2 SWSETDAALFAAVLGHDAAHHLATTPPHLDAPEGSPSSA---ELQASLHDLVE--RQGGA 56
+W++ D AL A+VLG DA +L + EG +++ +LQ L +LVE R G
Sbjct: 19 TWTDEDRALTASVLGTDAFAYLTKGGGAIS--EGLVAASLPVDLQNRLQELVESDRPGAG 76
Query: 57 WTYGIFWQEXXXXXXXXXXXXXXVLGWGDGHCRDGAGHGEVGAAE-------RSVARKRV 109
W Y IFWQ VLGWGDG CR+ GE+G A + RKRV
Sbjct: 77 WNYAIFWQ------LSRTKSGDLVLGWGDGSCRE-PHDGEMGPAASAGSDEAKQRMRKRV 129
Query: 110 LLRLHXXXXXXXXXXXXXXXRLDRVTGAEMYFLASMYFSFPEGSGGPGRALASGRHAWAD 169
L RLH +D+VT EM+FLASMYF+FP +GGPG+ A+G W
Sbjct: 130 LQRLHSAFGGVDEEDYAPG--IDQVTDTEMFFLASMYFAFPRRAGGPGQVFAAGVPLWI- 186
Query: 170 VDPHPSGSGSAPGWYVRSSLAQSAGLRTVVFLPCKGGVLELGSVVAIRETPEVLRAIQSA 229
P+ + + R LA +AG RT+V +P + GVLELGS+ + E+ + L+ I+S
Sbjct: 187 --PNTERNVFPANYCYRGYLANAAGFRTIVLVPFETGVLELGSMQQVAESSDTLQTIRSV 244
Query: 230 M-----------RAVPAPPED----FMRIFGKDLSPGRPS 254
R + P D +IFGKDL+ GRPS
Sbjct: 245 FAGAIGNKAGVQRHEGSGPTDKSPGLAKIFGKDLNLGRPS 284
>Os10g0575000 Similar to Transcription factor MYC7E (Fragment)
Length = 699
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 88/144 (61%), Gaps = 29/144 (20%)
Query: 295 ERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIA 354
E+RPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVP +SKMDKASLL DAI+
Sbjct: 505 EKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIS 564
Query: 355 YIQELEARLRG-------------------DA--PVP--------ARADGPAVEVKAMQD 385
YI EL +L DA P P AR +E K +
Sbjct: 565 YINELRGKLTALETDKETLQSQMESLKKERDARPPAPSGGGGDGGARCHAVEIEAKILGL 624
Query: 386 EVVLRVTTPLDEHPISRVFHAMRE 409
E ++RV HP +R+ A+RE
Sbjct: 625 EAMIRVQCHKRNHPAARLMTALRE 648
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 42 LQASLHDLVERQGGAWTYGIFWQEXXXXXXXXXXXXXXVLGWGDGH---CRDGAGHGEV- 97
LQ L ++E WTY IFWQ +LGWGDG+ C D
Sbjct: 68 LQQRLQSIIEGSRETWTYAIFWQ-----SSIDVSTGASLLGWGDGYYKGCDDDKRKQRSS 122
Query: 98 --GAAERSVARKRVLLRLHXXXXXXXXXXXXXXXRLDRVTGAEMYFLASMYFSFPEGSGG 155
AA RKRVL L+ + VT E +FL SM SFP G G
Sbjct: 123 TPAAAAEQEHRKRVLRELNSLIAGAGAAPDEAVE--EEVTDTEWFFLVSMTQSFPNGLGL 180
Query: 156 PGRALASGRHAWADVDPHPSGSGSAPGWYVRSSLAQSAGLRTVVFLPCKGGVLELGSVVA 215
PG+AL + + W +G SAP R+ A + GLRT+V LP GVLELGS
Sbjct: 181 PGQALFAAQPTWI-----ATGLSSAP--CDRARQAYTFGLRTMVCLPLATGVLELGSTDV 233
Query: 216 IRET 219
I +T
Sbjct: 234 IFQT 237
>Os09g0519100 Similar to BHLH transcription factor (Fragment)
Length = 284
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 83/155 (53%), Gaps = 32/155 (20%)
Query: 290 QAGGQERRPRKRGRKPANGREEP-LNHVEAERQRREKLNQRFYALRAVVPKISKMDKASL 348
+A +R ++RGRKP + P ++HVEAERQRREKLN+RF LRA VP +S+MDKASL
Sbjct: 86 EAAAAQRPAKRRGRKPGPRPDGPTVSHVEAERQRREKLNRRFCDLRAAVPTVSRMDKASL 145
Query: 349 LSDAIAYIQELE---ARLRGDAPVPARAD---------------------------GPAV 378
L+DA AYI EL ARL DA A A AV
Sbjct: 146 LADAAAYIAELRARVARLESDARQAAAARFEPSSCGGGGNASYHGGGGGGGAAPGLDEAV 205
Query: 379 EVKAM-QDEVVLRVTTPLDEHPISRVFHAMRESQI 412
EV+ M +D +RVTT H +R+ A+R ++
Sbjct: 206 EVRKMGRDAAAVRVTTTGARHAPARLMGALRSLEL 240
>Os08g0543700
Length = 263
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 295 ERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIA 354
+RR RK G + G P+ HVEAERQRREKLN+RF LRA VP +S+MDKASLL+DA+
Sbjct: 75 KRRGRKPGPRSGGGGAPPIGHVEAERQRREKLNRRFCELRAAVPTVSRMDKASLLADAVD 134
Query: 355 YIQELEARL 363
YI EL R+
Sbjct: 135 YIAELRRRV 143
>Os03g0671000
Length = 289
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 21/121 (17%)
Query: 313 LNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLRG------- 365
L HV AER+RREK+NQRF L AV+PK+ KMDKA++LSDA +YI+EL+ +L+
Sbjct: 129 LEHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALEEQAAA 188
Query: 366 -------DAPVPARADG-----PAVEVKA--MQDEVVLRVTTPLDEHPISRVFHAMRESQ 411
P PARA P +EV+ + V++R+ E I R+ + E
Sbjct: 189 RVTEAAMATPSPARAMNHLPVPPEIEVRCSPTNNVVMVRIHCENGEGVIVRILAEVEEIH 248
Query: 412 I 412
+
Sbjct: 249 L 249
>Os07g0211500
Length = 658
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 298 PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQ 357
P RG K A+G NHV ER+RREKLN++F LR++VP ++KMDKAS+L D I Y++
Sbjct: 459 PESRGGKGASGCHPSANHVLKERRRREKLNEKFIILRSLVPFMTKMDKASILGDTIEYVK 518
Query: 358 ELEARLR 364
+L R++
Sbjct: 519 QLRNRIQ 525
>Os01g0928000 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 381
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 42/53 (79%)
Query: 312 PLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLR 364
P ++ AER+RR+KLN R Y LR+VVPKISKMD+AS+L DAI Y++EL R+
Sbjct: 191 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIN 243
>Os03g0229100
Length = 451
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 6/89 (6%)
Query: 279 SLDFSKANVQEQ--AGGQERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAV 336
+LDFS Q+ G ++ P +R R PAN +E HV AER+RREKL Q+F AL +
Sbjct: 254 TLDFSGRGWQQDDGVGVFQQPPERRSRPPANAQE----HVIAERKRREKLQQQFVALATI 309
Query: 337 VPKISKMDKASLLSDAIAYIQELEARLRG 365
VP + K DK SLL I Y+++LE +++
Sbjct: 310 VPGLKKTDKISLLGSTIDYVKQLEEKVKA 338
>Os11g0523700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 524
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 42/53 (79%)
Query: 312 PLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLR 364
P ++ AER+RR+KLN R Y LR+VVPKISKMD+AS+L DAI Y++EL ++
Sbjct: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKIN 386
>Os01g0577300 Similar to Transcriptional activator Rb homolog (Fragment)
Length = 265
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 43/51 (84%)
Query: 314 NHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLR 364
NHV +ER+RREKLN+ F L+++VP I K+DKAS+LS+ IAY++ELE R++
Sbjct: 83 NHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETIAYLKELERRVQ 133
>Os03g0671800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 385
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 315 HVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARL 363
H+ AER+RREK+NQRF L V+P + KMDKA++LSDA+ Y++E++ +L
Sbjct: 193 HIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEKL 241
>Os03g0725800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 359
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 42/51 (82%)
Query: 315 HVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLRG 365
H+ AER+RREKL+QRF AL +VP + KMDKAS+L DAI Y+++L+ +++G
Sbjct: 182 HILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKG 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,449,384
Number of extensions: 744042
Number of successful extensions: 2826
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 16
Length of query: 460
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 356
Effective length of database: 11,605,545
Effective search space: 4131574020
Effective search space used: 4131574020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)