Os11g0523700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116).
FiT-DB / Search/ Help/ Sample detail
|
Os11g0523700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.86 | 0.614 | 3.41 | -1.09 | 0.594 | -0.785 | -0.746 | 3.55 | -0.319 | 0.507 | 21.2 | 2787 | -- | -- |
| 184.83 | 0.633 | 3.53 | -1.21 | 0.599 | -1.87 | -0.588 | -- | -0.43 | 0.669 | 18.4 | 10040 | -- | -- |
| 172.73 | 0.612 | 3.4 | -1.02 | 0.582 | -0.738 | -- | 3.7 | -0.301 | 0.607 | 21.2 | 3051 | -- | -- |
| 180.22 | 0.625 | 3.47 | -0.451 | 0.612 | -2.27 | -- | -- | -0.183 | 23.8 | 17.6 | 21727 | -- | -- |
| 193.73 | 0.648 | 3.38 | -0.976 | -- | -0.729 | -- | 3.81 | -0.286 | -- | 20.8 | 3072 | -- | -- |
| 226.8 | 0.706 | 3.63 | -2.54 | 0.543 | -- | -0.602 | -- | -0.86 | 0.276 | -- | -- | -- | -- |
| 228.3 | 0.708 | 3.62 | -2.51 | 0.547 | -- | -- | -- | -0.858 | 0.519 | -- | -- | -- | -- |
| 197.02 | 0.654 | 3.46 | -0.798 | -- | -2.09 | -- | -- | -0.304 | -- | 17.1 | 21745 | -- | -- |
| 183.82 | 0.631 | 3.47 | -- | 0.559 | -2.62 | -- | -- | -0.172 | 0.69 | 17.5 | 21667 | -- | -- |
| 247.05 | 0.734 | 3.61 | -2.49 | -- | -- | -- | -- | -0.848 | -- | -- | -- | -- | -- |
| 394.81 | 0.929 | 3.56 | -- | 0.51 | -- | -- | -- | -0.578 | 0.274 | -- | -- | -- | -- |
| 201.88 | 0.662 | 3.46 | -- | -- | -2.49 | -- | -- | -0.152 | -- | 15.16 | 47520 | -- | -- |
| 411.19 | 0.946 | 3.55 | -- | -- | -- | -- | -- | -0.572 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 3 | 162.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 4 | 162.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 13 | 163.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 15 | 163.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 19 | 163.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 42 | 164.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 45 | 164.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 57 | 165.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 72 | 166.06 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 78 | 166.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 84 | 166.43 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 20 |
| 86 | 166.46 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 90 | 166.53 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 108 | 166.82 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 133 | 167.39 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 137 | 167.43 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 147 | 167.58 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 169 | 167.93 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 189 | 168.21 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 199 | 168.38 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 202 | 168.44 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 209 | 168.50 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 212 | 168.52 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 225 | 168.66 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 233 | 168.73 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 261 | 168.86 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 262 | 168.86 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 278 | 168.98 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 279 | 169.00 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 287 | 169.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 288 | 169.02 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 291 | 169.05 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 292 | 169.06 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 302 | 169.12 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 303 | 169.12 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 308 | 169.15 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 337 | 169.28 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 360 | 169.47 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |
| 363 | 169.47 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 21 |
| 371 | 169.48 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 407 | 169.68 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 430 | 169.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 8 |
| 452 | 169.92 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 477 | 170.03 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 508 | 170.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 526 | 170.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 528 | 170.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 530 | 170.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 636 | 170.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 718 | 171.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 800 | 171.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 809 | 171.45 | humidity | 80 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 890 | 171.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 944 | 172.06 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 967 | 172.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 972 | 172.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 990 | 172.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 995 | 172.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 4 |