BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0523700 Os11g0523700|AK109915
(524 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0523700 Similar to Transcription factor ICE1 (Inducer ... 604 e-173
Os01g0928000 Similar to Transcription factor ICE1 (Inducer ... 275 8e-74
Os10g0544200 Basic helix-loop-helix dimerisation region bHL... 114 2e-25
Os03g0135700 Similar to Transcriptional activator Rb homolo... 109 5e-24
Os02g0120500 Basic helix-loop-helix dimerisation region bHL... 82 8e-16
Os12g0632600 76 6e-14
Os01g0235700 Similar to BHLH transcription factor (Fragment) 74 3e-13
Os10g0575000 Similar to Transcription factor MYC7E (Fragment) 73 4e-13
Os07g0211500 71 2e-12
Os04g0301500 Basic helix-loop-helix dimerisation region bHL... 69 7e-12
Os01g0705700 Similar to Transcription factor ICE1 (Inducer ... 69 7e-12
>Os11g0523700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 524
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 328/524 (62%), Positives = 328/524 (62%)
Query: 1 MLPRFHGAMWMQXXXXXXQEHGQAAPPGQEQHHHDQHXXXXXXXXXXXXXXXXXXXXXXX 60
MLPRFHGAMWMQ QEHGQAAPPGQEQHHHDQH
Sbjct: 1 MLPRFHGAMWMQDDGGGDQEHGQAAPPGQEQHHHDQHLMALAAAAAGGAGFGAAQAPAPL 60
Query: 61 XDEDWYFDXXXXXXXXXXXXXXXXXXXVHXXXXXXXXXXXXXQQFSLLNMGAAAAPFDVS 120
DEDWYFD VH QQFSLLNMGAAAAPFDVS
Sbjct: 61 LDEDWYFDAAGGGGGGAHGSMMLGLSSVHGGIGAGTSGGGHGQQFSLLNMGAAAAPFDVS 120
Query: 121 GFDLXXXXXXXXXXXXXXXXXXXXNASNTALLPVXXXXXXXXXXXXXXXXSQMPEFGGLA 180
GFDL NASNTALLPV SQMPEFGGLA
Sbjct: 121 GFDLGIACGGVGGGGDVVSFLGGGNASNTALLPVGNAGFLGTFGGFGTAASQMPEFGGLA 180
Query: 181 GFDMFDAGAVNTGGXXXXXXXXXXXXXXXXHVSNTAPFSGRGKAAVLRPLDIVPPVGAQP 240
GFDMFDAGAVNTGG HVSNTAPFSGRGKAAVLRPLDIVPPVGAQP
Sbjct: 181 GFDMFDAGAVNTGGSSSSSSAAAAAASASAHVSNTAPFSGRGKAAVLRPLDIVPPVGAQP 240
Query: 241 TLFQKRALRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYD 300
TLFQKRALRRN NYD
Sbjct: 241 TLFQKRALRRNAGEDDDDKKRKAAAGAGAGALSADGADMVLDDGDDDGLSIDASGGLNYD 300
Query: 301 SEDARGGEDSGAKKESNANSTVTXXXXXXXXXMPAKNLMAERRRRKKLNDRLYMLRSVVP 360
SEDARGGEDSGAKKESNANSTVT MPAKNLMAERRRRKKLNDRLYMLRSVVP
Sbjct: 301 SEDARGGEDSGAKKESNANSTVTGDGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVP 360
Query: 361 KISKMDRASILGDAIEYLKELLQKINDLQNELEXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
KISKMDRASILGDAIEYLKELLQKINDLQNELE
Sbjct: 361 KISKMDRASILGDAIEYLKELLQKINDLQNELESSPATSSLPPTPTSFHPLTPTLPTLPS 420
Query: 421 RIKEEICPSALPSPTGQQPRVEVRLREGRAVNIHMFCARRPGLLLSAMRAVEGLGLDVQQ 480
RIKEEICPSALPSPTGQQPRVEVRLREGRAVNIHMFCARRPGLLLSAMRAVEGLGLDVQQ
Sbjct: 421 RIKEEICPSALPSPTGQQPRVEVRLREGRAVNIHMFCARRPGLLLSAMRAVEGLGLDVQQ 480
Query: 481 AVISCFNGFTLDIFKAEQCKDGPGLLPEEIKAVLMQSAGFHTMI 524
AVISCFNGFTLDIFKAEQCKDGPGLLPEEIKAVLMQSAGFHTMI
Sbjct: 481 AVISCFNGFTLDIFKAEQCKDGPGLLPEEIKAVLMQSAGFHTMI 524
>Os01g0928000 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 381
Score = 275 bits (702), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 129/189 (68%), Positives = 148/189 (78%)
Query: 333 MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNEL 392
MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ+INDL NEL
Sbjct: 190 MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNEL 249
Query: 393 EXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKEEICPSALPSPTGQQPRVEVRLREGRAVN 452
E R+KEE+CP++ PSP+GQQ VEVR+REG AVN
Sbjct: 250 ESAPSSSLTGPSSASFHPSTPTLQTFPGRVKEELCPTSFPSPSGQQATVEVRMREGHAVN 309
Query: 453 IHMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTLDIFKAEQCKDGPGLLPEEIKA 512
IHMFCARRPG+L+S +RA++ LGL ++QAVISCFNGF +D+F+AEQC+DGPGL PEEIK
Sbjct: 310 IHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCRDGPGLGPEEIKT 369
Query: 513 VLMQSAGFH 521
VL+ SAG
Sbjct: 370 VLLHSAGLQ 378
>Os10g0544200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 380
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 106/200 (53%), Gaps = 32/200 (16%)
Query: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
P+KNLMAERRRRK+LNDRL MLRSVVP+ISKMDR SILGD I Y+KEL+ +I +LQ E
Sbjct: 194 PSKNLMAERRRRKRLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKELMDRIKNLQVE-- 251
Query: 394 XXXXXXXXXXXXXXXXXXXXXXXXXXXRIKEEICPSALPSPTGQQ-------PRVEVRLR 446
+K S +G++ R EV R
Sbjct: 252 ------------AATGDSSSSSTENLSMLKLNTLKPPPSSSSGEETPLIRNSTRFEVERR 299
Query: 447 EGRAVNIHMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTL------DIFKAEQCK 500
E + I M CA P LL S + A+E LG++++Q VISCF+ F + D K E +
Sbjct: 300 ENGSTRIEMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKREMTR 359
Query: 501 DGPGLLPEEIKAVLMQSAGF 520
D EEIK L +SAG+
Sbjct: 360 DT-----EEIKQTLFRSAGY 374
>Os03g0135700 Similar to Transcriptional activator Rb homolog (Fragment)
Length = 418
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR SILGD I+Y+KEL ++I L+ E+
Sbjct: 180 PSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELTERIKTLEEEIG 239
Query: 394 XXXXXXXXXXXXXXXXXXXXXXXXXXXRIKEEICPSALPSPTGQQPRVEVRLREGRAVNI 453
K +V R I
Sbjct: 240 VTPEELDLLNTMKDSSSGNNNEMLVRNSTK-----------------FDVENRGSGNTRI 282
Query: 454 HMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTLDIFKAEQCKDGPGLLPEEIKAV 513
+ C PG+LLS + A+E LGL+++Q V+SCF+ F + ++ + +EIK
Sbjct: 283 EICCPANPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQT 342
Query: 514 LMQSAGF 520
L +SAG+
Sbjct: 343 LFRSAGY 349
>Os02g0120500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 552
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 335 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
KNL AER+RRKKLN LY LRS+VP I+KMDRASILGDAI+Y+ L +++ +LQ+ELE
Sbjct: 284 CKNLEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQDELE 342
>Os12g0632600
Length = 338
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 29/178 (16%)
Query: 337 NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELEXXX 396
+++AERRRR+K+N R L +V+P + KMD+A+ILGDA++Y+KEL +K+ L+ E
Sbjct: 168 HIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQEKVKTLEEE----- 222
Query: 397 XXXXXXXXXXXXXXXXXXXXXXXXRIKEEICPSALPSP-----TGQQPRVEVRLREGRAV 451
+++ C + G+ P +EVR+ E R+V
Sbjct: 223 ---------------DGGGRPAAMVVRKSSCSGRQSAAGDGDGEGRVPEIEVRVWE-RSV 266
Query: 452 NIHMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTLDIF---KAEQCKDGPGLL 506
+ + C GLL+ + VE L L + + F T+ I KA + P LL
Sbjct: 267 LVRVQCGNSRGLLVRLLSEVEELRLGITHTSVMPFPASTVIITITAKASSLSNHPALL 324
>Os01g0235700 Similar to BHLH transcription factor (Fragment)
Length = 617
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
P ++ AER+RR+KLN R Y LR+VVP ISKMD+AS+LGDAI Y+ +L +K+ +++ E E
Sbjct: 461 PLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLKEMEVERE 520
>Os10g0575000 Similar to Transcription factor MYC7E (Fragment)
Length = 699
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
P ++ AER+RR+KLN R Y LR+VVP +SKMD+AS+LGDAI Y+ EL K+ L+ + E
Sbjct: 522 PLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKE 581
>Os07g0211500
Length = 658
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 46/55 (83%)
Query: 335 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQ 389
A +++ ERRRR+KLN++ +LRS+VP ++KMD+ASILGD IEY+K+L +I +L+
Sbjct: 474 ANHVLKERRRREKLNEKFIILRSLVPFMTKMDKASILGDTIEYVKQLRNRIQELE 528
>Os04g0301500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 310
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 336 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 381
KN++ ER RR+KLN++LY LRSVVP I+KMD+ASI+ DAIEY++ L
Sbjct: 93 KNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRL 138
>Os01g0705700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 460
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKI 385
P ++ AER+RR+KLN R Y LR+VVPKISKMD+AS+L DAI Y++EL ++
Sbjct: 312 PLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARL 363
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,414,793
Number of extensions: 326092
Number of successful extensions: 891
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 12
Length of query: 524
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 419
Effective length of database: 11,553,331
Effective search space: 4840845689
Effective search space used: 4840845689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)