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Os01g0235700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to BHLH transcription factor (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0151) R2 : 0.0561
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0318) R2dN8 : 0.0724 R2N8 : 0.0561
σ : 0.285
deviance : 37.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.89 0.175 12.8 0.716 0.357 0.426 0.278 0.313 0.262 3.01 80 1358 -- --
13.98 0.174 12.8 0.741 0.354 0.444 0.267 -- 0.267 3.03 80 1359 -- --
14.15 0.175 12.8 0.714 0.356 0.421 -- 0.276 0.261 3.06 80.09 1363 -- --
14.21 0.176 12.8 0.737 0.356 0.434 -- -- 0.266 3.06 80.06 1357 -- --
17.54 0.195 12.8 0.73 -- 0.61 -- 0.179 0.265 -- 79 1754 -- --
16.48 0.19 12.8 0.731 0.325 -- 0.212 -- 0.241 2.97 -- -- -- --
16.63 0.191 12.8 0.726 0.326 -- -- -- 0.239 3.01 -- -- -- --
17.47 0.195 12.8 0.744 -- 0.617 -- -- 0.277 -- 79.32 1754 -- --
27.63 0.245 12.8 -- 0.357 0.419 -- -- 0.272 3.09 80 29147 -- --
22.72 0.223 12.8 0.74 -- -- -- -- 0.248 -- -- -- -- --
30.53 0.258 12.8 -- 0.34 -- -- -- 0.158 3.02 -- -- -- --
25.57 0.235 12.8 -- -- 0.677 -- -- 0.134 -- 64.92 47520 -- --
37.18 0.285 12.8 -- -- -- -- -- 0.166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.39 temperature 25.0 270 < th dose independent rect. 1 1
4 13.48 temperature 30.0 270 < th dose independent rect. 4 8
6 13.54 radiation 30.0 270 < th dose independent rect. 4 21
8 13.58 radiation 30.0 270 < th dose independent rect. 5 19
10 13.61 temperature 30.0 90 < th dose independent rect. 6 6
13 13.63 radiation 40.0 270 < th dose dependent rect. 4 21
15 13.68 radiation 40.0 270 < th dose dependent rect. 5 19
23 13.73 humidity 80.0 1440 < th dose dependent rect. 20 3
26 13.75 radiation 30.0 270 < th dose independent rect. 5 6
27 13.75 radiation 40.0 270 < th dose independent rect. 4 8
28 13.76 humidity 80.0 1440 > th dose independent sin 11 NA
30 13.76 precipitation 0.1 270 < th dose independent rect. 24 15
32 13.76 precipitation 0.1 270 < th dose dependent rect. 24 15
38 13.79 precipitation 0.1 270 < th dose independent rect. 12 16
40 13.79 precipitation 0.1 270 < th dose dependent rect. 12 16
47 13.81 humidity 80.0 1440 > th dose independent rect. 20 3
51 13.82 humidity 80.0 1440 > th dose independent rect. 17 18
55 13.83 humidity 80.0 1440 > th dose independent rect. 19 16
58 13.83 atmosphere 1010.0 10 < th dose independent rect. 12 19
64 13.84 humidity 80.0 1440 > th dose independent rect. 21 1
67 13.84 humidity 80.0 1440 > th dose independent rect. 19 20
71 13.85 temperature 15.0 270 > th dose independent rect. 24 15
76 13.86 humidity 50.0 270 > th dose independent rect. 12 16
84 13.87 humidity 80.0 1440 < th dose independent sin 12 NA
89 13.87 humidity 50.0 270 > th dose independent rect. 24 15
97 13.88 humidity 80.0 1440 < th dose independent rect. 17 18
109 13.89 wind 9.0 270 < th dose independent rect. 24 15
122 13.90 humidity 80.0 1440 < th dose dependent rect. 19 7
124 13.91 humidity 80.0 1440 < th dose independent rect. 20 3
128 13.91 atmosphere 1015.0 270 < th dose independent rect. 24 15
134 13.91 radiation 40.0 270 < th dose dependent rect. 5 7
138 13.92 temperature 10.0 270 > th dose independent rect. 15 9
145 13.92 humidity 80.0 1440 < th dose independent rect. 19 20
158 13.93 wind 9.0 270 < th dose independent rect. 12 16
173 13.94 radiation 30.0 270 < th dose independent rect. 15 9
185 13.94 humidity 80.0 1440 > th dose independent rect. 9 22
197 13.95 atmosphere 995.0 270 > th dose independent rect. 24 15
204 13.95 humidity 80.0 1440 > th dose independent rect. 9 20
217 13.96 wind 1.0 270 > th dose independent rect. 4 7
218 13.96 temperature 10.0 270 > th dose independent rect. 4 8
219 13.96 atmosphere 995.0 270 > th dose independent rect. 4 8
220 13.96 atmosphere 1015.0 270 < th dose independent rect. 4 8
229 13.96 temperature 10.0 270 > th dose independent rect. 12 16
250 13.97 wind 9.0 270 < th dose independent rect. 15 9
266 13.98 wind 9.0 270 < th dose independent rect. 4 8
270 13.98 humidity 80.0 1440 < th dose independent rect. 17 10
285 13.99 humidity 80.0 1440 > th dose independent no NA NA
305 13.99 humidity 80.0 1440 > th dose independent rect. 6 22
319 14.00 precipitation 0.1 270 < th dose independent rect. 4 8
336 14.00 wind 1.0 10 > th dose dependent rect. 12 7
337 14.00 precipitation 0.1 270 < th dose dependent rect. 4 8
360 14.01 humidity 80.0 1440 < th dose independent rect. 9 20
365 14.01 humidity 80.0 1440 > th dose independent rect. 1 23
377 14.02 atmosphere 995.0 270 > th dose independent rect. 15 9
395 14.02 wind 3.0 43200 < th dose dependent rect. 4 2
413 14.03 radiation 30.0 270 < th dose independent rect. 17 18
443 14.05 humidity 80.0 1440 < th dose independent no NA NA
471 14.05 humidity 80.0 1440 < th dose independent rect. 5 23
497 14.06 humidity 90.0 1440 < th dose dependent sin 12 NA
503 14.07 temperature 10.0 90 > th dose independent rect. 6 6
506 14.07 atmosphere 995.0 90 > th dose independent rect. 6 6
507 14.07 atmosphere 1015.0 90 < th dose independent rect. 6 6
528 14.07 humidity 80.0 1440 < th dose independent rect. 1 23
536 14.08 precipitation 0.1 90 < th dose independent rect. 6 6
564 14.08 precipitation 0.1 90 < th dose dependent rect. 6 6
573 14.09 precipitation 0.1 10 < th dose independent rect. 12 18
585 14.09 radiation 40.0 270 < th dose dependent rect. 15 9
588 14.09 precipitation 0.1 10 < th dose dependent rect. 12 18
590 14.10 wind 9.0 90 < th dose independent rect. 6 6
610 14.11 humidity 80.0 14400 > th dose independent rect. 19 3
613 14.11 humidity 50.0 270 > th dose independent rect. 4 7
624 14.11 wind 5.0 10 < th dose independent rect. 7 18
625 14.11 temperature 15.0 10 > th dose independent rect. 12 18
633 14.12 wind 1.0 43200 < th dose independent rect. 5 1
656 14.13 temperature 10.0 10 > th dose independent rect. 6 6
658 14.13 atmosphere 995.0 10 > th dose independent rect. 6 6
659 14.13 atmosphere 1015.0 10 < th dose independent rect. 6 6
662 14.13 wind 1.0 270 > th dose independent rect. 15 9
668 14.13 wind 1.0 270 > th dose independent rect. 11 17
691 14.14 precipitation 0.1 10 < th dose independent rect. 6 6
700 14.14 atmosphere 995.0 90 > th dose dependent rect. 6 6
701 14.14 precipitation 0.1 10 < th dose dependent rect. 6 6
717 14.15 wind 9.0 10 < th dose independent rect. 12 18
726 14.15 temperature 30.0 270 < th dose dependent rect. 24 4
733 14.16 wind 9.0 10 < th dose independent rect. 6 6
742 14.16 humidity 50.0 10 > th dose independent rect. 12 18
746 14.16 temperature 30.0 270 < th dose dependent rect. 1 2
750 14.17 temperature 25.0 90 < th dose independent rect. 3 2
752 14.17 humidity 80.0 14400 > th dose independent rect. 18 5
763 14.17 wind 5.0 10 < th dose independent rect. 6 21
796 14.18 humidity 50.0 1440 > th dose dependent sin 13 NA
800 14.18 radiation 20.0 90 < th dose dependent rect. 17 8
805 14.18 humidity 70.0 1440 > th dose dependent rect. 9 21
806 14.18 humidity 70.0 1440 > th dose dependent rect. 15 21
810 14.19 wind 1.0 270 > th dose independent rect. 1 3
811 14.19 precipitation 0.1 270 < th dose independent rect. 1 3
835 14.19 precipitation 0.1 270 < th dose dependent rect. 1 3
850 14.20 humidity 80.0 14400 < th dose independent rect. 19 3
884 14.20 humidity 70.0 1440 > th dose dependent rect. 17 22
888 14.21 temperature 10.0 1440 > th dose independent rect. 7 6
892 14.21 atmosphere 995.0 1440 > th dose independent rect. 7 6
899 14.21 temperature 10.0 1440 > th dose independent rect. 13 18
949 14.22 humidity 50.0 1440 > th dose dependent rect. 17 11
970 14.23 radiation 1.0 90 > th dose independent rect. 6 6
989 14.23 humidity 70.0 1440 > th dose dependent no NA NA
991 14.23 atmosphere 995.0 10 > th dose dependent rect. 6 6