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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0301500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.119) R2 : 0.377
β1 : -4.5 (0.688) R2dD : 0.18 R2D : -0.072
β2 : 1.69 (0.286) R2dC : 0.0484 R2C : 0.0361
β3 : -4.47 (0.358) R2dE : 0.261 R2E : 0.244
β4 : -2.7 (1.31) R2dD*C : 0.00583 R2D*C : 0.00299
β5 : 8.61 (1.68) R2dD*E : 0.106 R2D*E : -0.0595
γ1 : -0.0366 (0.283) R2dN8 : 4.48e-05 R2N8 : -0.0049
σ : 2.06
deviance : 1920.09
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C
peak time of C : 17.8
E
wheather : radiation
threshold : 0.9941
memory length : 4297
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.99
open length of G : 1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1920.09 2.06 6.1 -4.5 1.69 -4.47 -2.7 8.61 -0.0366 17.8 0.9941 4297 4.99 1
2057.06 2.11 6.09 -4.11 1.63 -5.16 -2.87 -- 0.0134 17.9 0.466 5561 5.15 1.3
1937.73 2.05 6.11 -4.44 1.67 -4.48 -- 8.51 -0.0575 17.9 0.9943 4296 5 1
2018.56 2.09 5.97 -3.26 1.65 -5.47 -- -- 0.0871 18 0.5342 8945 5.1 1.51
2068.15 2.12 6.1 -4.49 -- -4.38 -- 8.62 -0.0487 -- 0.9828 4345 4.98 0.983
2639.31 2.41 5.62 -0.767 1.56 -- -2.9 -- 1.83 18 -- -- -- --
2658.97 2.41 5.62 -0.746 1.55 -- -- -- 1.81 18.3 -- -- -- --
2131.27 2.15 5.96 -3.08 -- -5.31 -- -- 0.189 -- 0.6196 8945 5.09 1.53
2000.7 2.08 5.95 -- 1.56 -4.76 -- -- 0.513 17.8 0.5317 8643 4.18 1.37
2783.6 2.47 5.6 -0.788 -- -- -- -- 1.78 -- -- -- -- --
2673.64 2.42 5.61 -- 1.56 -- -- -- 1.9 18.2 -- -- -- --
2094.42 2.13 5.86 -- -- -4.97 -- -- 0.851 -- 0.5467 8958 4.33 1.33
2799.99 2.47 5.58 -- -- -- -- -- 1.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1900.08 radiation 30.0 14400 < th dose independent rect. 17 14
2 1904.12 radiation 30.0 14400 < th dose independent rect. 3 4
3 1904.39 radiation 1.0 43200 < th dose independent rect. 18 8
10 1904.86 radiation 1.0 43200 < th dose independent rect. 18 2
14 1906.08 radiation 30.0 14400 < th dose independent rect. 24 7
23 1917.77 radiation 30.0 14400 < th dose independent rect. 20 11
26 1920.10 radiation 1.0 43200 > th dose independent rect. 18 1
36 1922.75 radiation 1.0 43200 < th dose dependent rect. 18 11
37 1924.04 radiation 1.0 4320 < th dose dependent rect. 5 1
42 1930.31 radiation 1.0 4320 < th dose dependent rect. 21 9
43 1930.62 radiation 1.0 4320 < th dose dependent rect. 19 11
46 1930.93 wind 5.0 43200 < th dose independent rect. 11 4
49 1931.26 radiation 1.0 43200 < th dose dependent rect. 18 8
53 1931.40 radiation 1.0 43200 < th dose dependent rect. 18 2
59 1931.70 wind 5.0 43200 > th dose independent rect. 11 5
62 1934.32 radiation 20.0 14400 > th dose dependent rect. 17 14
63 1935.25 wind 3.0 43200 > th dose dependent rect. 12 2
64 1935.27 radiation 1.0 4320 < th dose dependent rect. 18 16
66 1936.37 wind 5.0 43200 < th dose independent rect. 12 2
79 1937.39 wind 3.0 43200 > th dose dependent rect. 11 4
89 1940.43 radiation 30.0 14400 > th dose independent rect. 16 16
94 1942.78 radiation 20.0 14400 > th dose dependent rect. 6 1
108 1943.72 radiation 1.0 4320 < th dose dependent rect. 4 6
109 1943.93 radiation 1.0 4320 < th dose dependent rect. 2 8
110 1943.93 radiation 30.0 14400 > th dose dependent rect. 16 16
114 1944.44 radiation 20.0 43200 < th dose dependent rect. 2 3
115 1944.66 radiation 1.0 4320 < th dose dependent rect. 21 13
126 1945.86 radiation 1.0 4320 < th dose dependent sin 9 NA
144 1947.78 radiation 20.0 43200 < th dose dependent rect. 4 1
161 1949.74 radiation 1.0 43200 < th dose dependent rect. 9 1
162 1949.86 wind 5.0 43200 > th dose independent rect. 11 10
168 1950.61 atmosphere 1015.0 43200 > th dose dependent rect. 1 1
189 1951.92 wind 5.0 43200 < th dose independent rect. 11 11
211 1953.12 radiation 1.0 43200 > th dose independent rect. 8 1
215 1953.26 radiation 1.0 43200 < th dose independent rect. 8 1
225 1954.10 radiation 20.0 14400 > th dose independent rect. 17 14
228 1954.20 radiation 1.0 43200 < th dose dependent rect. 18 17
271 1956.25 atmosphere 1005.0 43200 > th dose independent rect. 16 1
290 1957.34 wind 9.0 43200 < th dose dependent rect. 11 3
314 1958.95 radiation 10.0 43200 < th dose independent rect. 5 1
315 1959.06 radiation 10.0 43200 < th dose independent rect. 2 4
326 1959.39 radiation 10.0 43200 < th dose independent rect. 20 10
329 1959.54 radiation 1.0 43200 < th dose dependent rect. 21 8
375 1961.58 radiation 1.0 4320 > th dose independent rect. 18 16
400 1962.73 radiation 1.0 43200 < th dose dependent rect. 23 12
401 1962.73 radiation 1.0 43200 < th dose dependent rect. 21 14
408 1962.83 radiation 1.0 43200 < th dose dependent rect. 4 7
410 1962.84 radiation 20.0 14400 > th dose independent rect. 6 1
427 1963.12 radiation 1.0 43200 < th dose independent rect. 18 17
448 1964.11 wind 3.0 43200 > th dose dependent rect. 11 11
451 1964.22 radiation 1.0 43200 < th dose dependent sin 10 NA
457 1964.52 wind 5.0 43200 > th dose independent sin 20 NA
467 1965.17 atmosphere 1005.0 43200 < th dose independent rect. 16 1
495 1966.19 wind 5.0 43200 < th dose independent sin 21 NA
541 1967.57 temperature 15.0 43200 < th dose independent rect. 10 1
550 1967.97 temperature 15.0 43200 > th dose independent rect. 10 1
555 1968.11 humidity 60.0 43200 > th dose independent rect. 8 4
575 1968.59 humidity 60.0 43200 < th dose independent rect. 8 4
594 1968.64 radiation 1.0 43200 > th dose independent rect. 18 17
655 1970.28 radiation 1.0 43200 > th dose dependent rect. 18 11
681 1971.37 atmosphere 1005.0 43200 > th dose independent rect. 4 1
699 1972.02 atmosphere 1005.0 43200 > th dose independent rect. 1 2
740 1972.79 atmosphere 1015.0 43200 > th dose independent rect. 1 3
760 1973.18 humidity 60.0 43200 < th dose independent rect. 18 2
779 1973.36 atmosphere 1005.0 43200 < th dose independent rect. 1 2
781 1973.37 precipitation 0.1 43200 < th dose independent rect. 9 1
782 1973.37 precipitation 0.1 43200 < th dose dependent rect. 9 1
788 1973.43 humidity 90.0 43200 > th dose dependent rect. 8 1
815 1973.67 atmosphere 1015.0 43200 < th dose independent rect. 17 1
819 1973.73 precipitation 0.1 43200 > th dose independent rect. 9 1
821 1973.73 precipitation 0.1 43200 > th dose dependent rect. 9 1
830 1974.05 radiation 1.0 43200 < th dose dependent rect. 7 22
834 1974.18 atmosphere 1005.0 43200 > th dose independent rect. 1 18
854 1974.83 humidity 70.0 43200 < th dose independent rect. 8 1
859 1974.98 atmosphere 1005.0 43200 > th dose independent rect. 4 15
891 1975.33 atmosphere 1015.0 43200 < th dose independent rect. 1 2
922 1975.71 humidity 80.0 43200 > th dose dependent rect. 10 1
955 1976.46 radiation 1.0 43200 < th dose dependent rect. 4 22
956 1976.47 radiation 1.0 43200 < th dose dependent rect. 23 21
961 1976.48 radiation 1.0 43200 < th dose dependent no NA NA
981 1976.52 radiation 1.0 43200 < th dose dependent rect. 4 15