BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0301500 Os04g0301500|AB040744
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0301500 Basic helix-loop-helix dimerisation region bHL... 424 e-119
Os04g0300600 Basic helix-loop-helix dimerisation region bHL... 90 2e-18
Os02g0120500 Basic helix-loop-helix dimerisation region bHL... 71 9e-13
Os01g0928000 Similar to Transcription factor ICE1 (Inducer ... 71 1e-12
Os11g0523700 Similar to Transcription factor ICE1 (Inducer ... 70 2e-12
>Os04g0301500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 310
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/310 (72%), Positives = 224/310 (72%)
Query: 1 MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYEXXXXXXXXXXXXXXXXXXXX 60
MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYE
Sbjct: 1 MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYESSSPDGSHSSSAPAPAAVGG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKNILMERDRRRKLNEKLYALRSVVPNIT 120
NKNILMERDRRRKLNEKLYALRSVVPNIT
Sbjct: 61 DAAAAVAGSGGGMTTMMMGGGGGGGDDAGGANKNILMERDRRRKLNEKLYALRSVVPNIT 120
Query: 121 KMDKASIIKDAIEYIQRLQAEEQQMLREVXXXXXXXXXXXXXXXXXXXXXXXXDEEHEYG 180
KMDKASIIKDAIEYIQRLQAEEQQMLREV DEEHEYG
Sbjct: 121 KMDKASIIKDAIEYIQRLQAEEQQMLREVAALESAAAASAAPAAANPFAGLGADEEHEYG 180
Query: 181 HHHPSSSSERTKKVKRALSVSSISDXXXXXXXXXXXVEIQELRVSEVGDRVLVVSVTCSK 240
HHHPSSSSERTKKVKRALSVSSISD VEIQELRVSEVGDRVLVVSVTCSK
Sbjct: 181 HHHPSSSSERTKKVKRALSVSSISDALLAAAAPAPPVEIQELRVSEVGDRVLVVSVTCSK 240
Query: 241 RRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEVDHMDSVQMKQMVEAALSQLVA 300
RRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEVDHMDSVQMKQMVEAALSQLVA
Sbjct: 241 RRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEVDHMDSVQMKQMVEAALSQLVA 300
Query: 301 TGSPLSSMSY 310
TGSPLSSMSY
Sbjct: 301 TGSPLSSMSY 310
>Os04g0300600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 293
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 52/57 (91%)
Query: 93 KNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLREV 149
KNI MERDRR++LNEKL+ALR+VVP ITKMDKASI++DAI +I++LQ EE+Q+L E+
Sbjct: 97 KNIAMERDRRKRLNEKLFALRAVVPKITKMDKASIVRDAIAHIEKLQEEERQLLDEI 153
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 48/59 (81%)
Query: 221 ELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEV 279
+L+VS+VG++ + VS+ C+K R AMA+VC A+E L L+V++A++ +V G ++HT+FVEV
Sbjct: 233 QLQVSKVGEKTVAVSIRCAKTRGAMAKVCHAVESLYLKVVSASVAAVDGTIVHTMFVEV 291
>Os02g0120500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 552
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 14/196 (7%)
Query: 93 KNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQ---AEEQQMLREV 149
KN+ ER RR+KLN LY LRS+VPNITKMD+ASI+ DAI+YI LQ E Q L +
Sbjct: 285 KNLEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQDELEDN 344
Query: 150 XXXXXXXXXXXXXXXXXXXXXXXXDEEHEYGHH--HP----SSSSERTKKVKRALSVSSI 203
D+ H P S SS R A++ +
Sbjct: 345 HVHHKPPDVLIDHPPPASLVGLDNDDASPPNSHQQQPPLAVSGSSSRRSNKDPAMTDDKV 404
Query: 204 SDXXXXXXXXXXXVEIQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITAN 263
+E+++++ +E L V V + R+ A+ L L VI N
Sbjct: 405 GGGGGGGHRMEPQLEVRQVQGNE-----LFVQVLWEHKPGGFVRLMDAMNALGLEVINVN 459
Query: 264 ITSVAGCLMHTLFVEV 279
+T+ +++ V V
Sbjct: 460 VTTYKTLVLNVFRVMV 475
>Os01g0928000 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 381
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 93 KNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLREVXXX 152
KN++ ER RR+KLN++LY LRSVVP I+KMD+ASI+ DAIEY++ L + E+
Sbjct: 193 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESA 252
Query: 153 XXXXXXXXXXXXXXXXXXXXXDEEHEYGHHHPSSSSERT--KKVKRALSVSSISDXXXXX 210
HPS+ + +T +VK L +S
Sbjct: 253 PSSSLTGPSSAS-----------------FHPSTPTLQTFPGRVKEELCPTSFPSPSGQQ 295
Query: 211 XXXXXXVEIQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANITSVAGC 270
E+R+ E + + + C++R + RAL+ L L + A I+ G
Sbjct: 296 ATV-------EVRMRE--GHAVNIHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGF 346
Query: 271 LMHTLFVE 278
M E
Sbjct: 347 AMDVFRAE 354
>Os11g0523700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 524
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 93 KNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRL 138
KN++ ER RR+KLN++LY LRSVVP I+KMD+ASI+ DAIEY++ L
Sbjct: 336 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 381
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.127 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,024,248
Number of extensions: 146090
Number of successful extensions: 631
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 7
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)