FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0557200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Anthocyanin regulatory B protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0161) R2 : 0.00793
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0648 (0.0339) R2dN8 : 0.0102 R2N8 : 0.00793
σ : 0.304
deviance : 42.32
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.26 0.302 2.95 0.0732 0.147 -0.148 -0.106 -0.062 0.0775 1.28 9.54 11 -- --
41.25 0.299 2.95 0.0719 0.157 -0.158 -0.154 -- 0.0718 1.21 9.61 17 -- --
41.27 0.299 2.95 0.0656 0.149 -0.148 -- -0.121 0.0729 1.24 9.601 13 -- --
41.37 0.3 2.95 0.0811 0.16 -0.159 -- -- 0.0717 1.13 9.6 17 -- --
41.64 0.302 2.95 0.0618 -- -0.0615 -- -0.17 0.0756 -- 15.98 13 -- --
42.02 0.304 2.95 0.0689 0.0259 -- -0.214 -- 0.071 4.15 -- -- -- --
42.08 0.304 2.95 0.0716 0.0431 -- -- -- 0.0721 7.52 -- -- -- --
41.8 0.302 2.95 0.0697 -- -0.0641 -- -- 0.0767 -- 15.98 13 -- --
41.55 0.3 2.95 -- 0.156 -0.152 -- -- 0.0662 1.19 9.56 17 -- --
42.18 0.303 2.95 0.0722 -- -- -- -- 0.0728 -- -- -- -- --
42.21 0.304 2.95 -- 0.0437 -- -- -- 0.0642 7.41 -- -- -- --
41.93 0.302 2.95 -- -- -0.0717 -- -- 0.067 -- 20.33 10 -- --
42.32 0.304 2.95 -- -- -- -- -- 0.0648 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.86 wind 3.0 30 < th dose dependent rect. 2 1
2 36.86 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 36.87 wind 1.0 30 < th dose independent rect. 2 1
6 36.89 temperature 15.0 30 > th dose dependent rect. 2 1
8 36.90 temperature 25.0 30 < th dose independent rect. 2 1
9 36.90 humidity 80.0 30 > th dose independent rect. 2 1
15 36.92 atmosphere 1005.0 30 > th dose independent rect. 2 1
16 36.92 humidity 50.0 30 > th dose dependent rect. 2 1
20 36.93 temperature 10.0 30 > th dose independent rect. 2 1
24 36.93 humidity 50.0 30 > th dose independent rect. 2 1
27 36.93 atmosphere 995.0 30 > th dose independent rect. 2 1
28 36.93 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 36.93 radiation 1.0 30 < th dose independent rect. 2 1
35 36.93 precipitation 0.1 30 < th dose independent rect. 2 1
36 36.93 temperature 10.0 30 > th dose independent rect. 3 23
39 36.93 radiation 1.0 30 < th dose dependent rect. 2 1
44 36.93 precipitation 0.1 30 < th dose dependent rect. 2 1
48 37.05 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 37.09 temperature 30.0 30 < th dose dependent rect. 2 1
53 37.34 wind 9.0 30 < th dose independent rect. 3 23
60 37.47 wind 1.0 30 > th dose independent rect. 2 1
111 39.75 atmosphere 995.0 30 > th dose independent rect. 3 23
114 39.86 wind 1.0 10 < th dose independent rect. 22 5
120 39.95 precipitation 0.1 30 < th dose independent rect. 3 23
121 39.95 radiation 20.0 10 < th dose dependent rect. 3 23
122 39.95 precipitation 0.1 30 < th dose dependent rect. 3 23
126 39.97 wind 1.0 10 < th dose independent rect. 17 10
135 39.98 radiation 10.0 30 < th dose independent rect. 3 23
138 40.04 wind 3.0 10 < th dose dependent rect. 22 5
149 40.07 wind 1.0 10 > th dose independent rect. 16 12
153 40.12 radiation 20.0 10 > th dose independent rect. 14 2
169 40.14 wind 1.0 10 > th dose independent rect. 16 15
171 40.15 humidity 80.0 30 < th dose dependent rect. 19 1
186 40.21 temperature 25.0 270 > th dose independent rect. 1 1
210 40.30 wind 5.0 90 > th dose independent rect. 14 1
217 40.32 wind 5.0 30 > th dose independent rect. 11 5
240 40.34 atmosphere 1005.0 90 > th dose dependent rect. 1 5
249 40.37 radiation 20.0 10 > th dose independent sin 14 NA
252 40.37 radiation 30.0 90 > th dose dependent rect. 14 1
259 40.38 humidity 80.0 30 < th dose dependent rect. 19 9
262 40.39 radiation 40.0 30 < th dose independent rect. 11 16
273 40.40 radiation 40.0 30 < th dose independent rect. 11 5
307 40.41 wind 1.0 10 > th dose independent rect. 16 10
326 40.43 wind 1.0 10 < th dose independent rect. 6 21
345 40.45 wind 1.0 10 > th dose independent rect. 16 19
349 40.46 wind 3.0 90 > th dose dependent rect. 14 1
350 40.46 atmosphere 1005.0 10 > th dose dependent rect. 2 4
376 40.48 temperature 25.0 90 > th dose dependent rect. 1 4
415 40.52 wind 5.0 10 > th dose independent rect. 14 2
428 40.53 radiation 20.0 30 < th dose independent sin 14 NA
436 40.54 temperature 25.0 270 > th dose independent rect. 23 4
442 40.54 radiation 1.0 43200 < th dose dependent rect. 3 1
450 40.55 atmosphere 1015.0 30 < th dose independent rect. 3 23
477 40.57 radiation 20.0 10 < th dose independent rect. 14 12
480 40.58 wind 9.0 1440 < th dose independent rect. 3 1
481 40.58 temperature 10.0 1440 > th dose independent rect. 3 1
484 40.58 temperature 30.0 1440 < th dose independent rect. 3 1
488 40.58 humidity 50.0 1440 > th dose independent rect. 3 1
497 40.58 atmosphere 995.0 1440 > th dose independent rect. 3 1
498 40.58 radiation 1.0 1440 < th dose independent rect. 3 1
520 40.58 temperature 10.0 1440 > th dose independent rect. 4 23
523 40.58 radiation 1.0 1440 < th dose dependent rect. 3 1
539 40.58 wind 9.0 30 < th dose dependent rect. 3 23
547 40.59 wind 1.0 30 > th dose dependent rect. 10 6
549 40.60 radiation 20.0 30 < th dose independent rect. 13 10
558 40.61 wind 1.0 10 > th dose independent sin 15 NA
589 40.63 atmosphere 1015.0 1440 < th dose independent rect. 3 1
670 40.71 radiation 40.0 30 < th dose independent rect. 23 17
687 40.73 radiation 10.0 10 > th dose independent rect. 6 1
717 40.73 wind 1.0 30 > th dose dependent rect. 2 1
718 40.73 radiation 10.0 10 > th dose dependent rect. 6 1
797 40.76 radiation 20.0 90 < th dose independent rect. 3 19
798 40.76 wind 1.0 10 > th dose independent rect. 16 22
813 40.77 radiation 20.0 10 < th dose independent rect. 3 20
815 40.77 atmosphere 1010.0 30 < th dose dependent rect. 14 1
821 40.77 radiation 30.0 10 < th dose dependent rect. 14 12
825 40.78 humidity 70.0 90 < th dose independent rect. 14 1
832 40.78 temperature 25.0 90 > th dose dependent rect. 14 1
838 40.78 wind 1.0 30 > th dose dependent rect. 7 9
842 40.79 temperature 25.0 30 > th dose dependent rect. 23 1
863 40.80 wind 1.0 30 > th dose dependent rect. 4 12
864 40.81 temperature 25.0 30 > th dose independent rect. 23 1
865 40.81 humidity 90.0 90 < th dose independent rect. 2 1
867 40.81 precipitation 0.1 10 < th dose independent rect. 2 14
870 40.81 humidity 50.0 30 > th dose independent rect. 3 23
878 40.81 precipitation 0.1 10 < th dose dependent rect. 2 14
901 40.82 radiation 30.0 10 < th dose dependent rect. 13 10
909 40.83 atmosphere 995.0 10 > th dose independent rect. 16 10
913 40.83 wind 5.0 30 < th dose independent rect. 3 20
923 40.83 atmosphere 995.0 10 > th dose dependent rect. 2 14
926 40.83 radiation 30.0 90 < th dose dependent rect. 3 19
927 40.83 radiation 20.0 10 < th dose dependent rect. 3 20
934 40.84 radiation 10.0 10 < th dose independent rect. 10 16
956 40.85 humidity 80.0 90 < th dose independent rect. 19 1
957 40.85 temperature 10.0 10 > th dose independent rect. 16 10
959 40.85 radiation 40.0 10 < th dose independent rect. 16 10
961 40.85 temperature 10.0 10 > th dose independent rect. 2 14
963 40.85 atmosphere 1015.0 10 < th dose independent rect. 2 14
974 40.85 wind 9.0 10 < th dose dependent rect. 14 13
980 40.86 temperature 30.0 10 > th dose independent rect. 15 1
986 40.86 wind 9.0 10 < th dose independent rect. 16 10
990 40.86 precipitation 0.1 10 < th dose independent rect. 16 10