BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0557200 Os04g0557200|AK111704
(559 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0557200 Similar to Anthocyanin regulatory B protein (F... 1087 0.0
Os11g0258700 Similar to Ra 311 7e-85
Os04g0557500 Similar to Transcriptional activator Ra homolo... 287 2e-77
Os01g0576800 285 7e-77
Os01g0577300 Similar to Transcriptional activator Rb homolo... 220 2e-57
Os01g0576100 Similar to Oryza longistaminata transcriptiona... 192 5e-49
Os07g0211500 151 1e-36
Os01g0575900 144 2e-34
Os10g0575000 Similar to Transcription factor MYC7E (Fragment) 100 5e-21
U39866 94 3e-19
Os01g0575766 79 8e-15
Os12g0632600 79 1e-14
Os01g0235700 Similar to BHLH transcription factor (Fragment) 76 8e-14
Os01g0705700 Similar to Transcription factor ICE1 (Inducer ... 71 2e-12
Os03g0229100 70 4e-12
Os03g0725800 Basic helix-loop-helix dimerisation region bHL... 69 9e-12
Os10g0104300 65 9e-11
>Os04g0557200 Similar to Anthocyanin regulatory B protein (Fragment)
Length = 559
Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/559 (95%), Positives = 532/559 (95%)
Query: 1 MASAPPVQEEPLQPGTNHFRSLLAAAVRSISWSYAIFWSISTSCPGVLTWNDGFYNGVVK 60
MASAPPVQEEPLQPGTNHFRSLLAAAVRSISWSYAIFWSISTSCPGVLTWNDGFYNGVVK
Sbjct: 1 MASAPPVQEEPLQPGTNHFRSLLAAAVRSISWSYAIFWSISTSCPGVLTWNDGFYNGVVK 60
Query: 61 TRKISNSADLTAGQLVVQRSEQLRELYYSLLSGECDHRARRPIAALSPEDLADTEWYYVV 120
TRKISNSADLTAGQLVVQRSEQLRELYYSLLSGECDHRARRPIAALSPEDLADTEWYYVV
Sbjct: 61 TRKISNSADLTAGQLVVQRSEQLRELYYSLLSGECDHRARRPIAALSPEDLADTEWYYVV 120
Query: 121 CMTYSFQPGQGLPGKSYASNASVWLRNAQSADSKTFLRSLLAKSASIQTIICIPFTSGVL 180
CMTYSFQPGQGLPGKSYASNASVWLRNAQSADSKTFLRSLLAKSASIQTIICIPFTSGVL
Sbjct: 121 CMTYSFQPGQGLPGKSYASNASVWLRNAQSADSKTFLRSLLAKSASIQTIICIPFTSGVL 180
Query: 181 ELGTTDPVLEDPKLVNRIVAYFQELQFPICLEVLMSTSPSPNETEDADIVSEGLITHNAI 240
ELGTTDPVLEDPKLVNRIVAYFQELQFPICLEVLMSTSPSPNETEDADIVSEGLITHNAI
Sbjct: 181 ELGTTDPVLEDPKLVNRIVAYFQELQFPICLEVLMSTSPSPNETEDADIVSEGLITHNAI 240
Query: 241 EEGQMVVSDECVSNANRDPITMEIDELYSIYEXXXXXXXXXXXTVRFLEDNGWPVNPSSF 300
EEGQMVVSDECVSNANRDPITMEIDELYSIYE TVRFLEDNGWPVNPSSF
Sbjct: 241 EEGQMVVSDECVSNANRDPITMEIDELYSIYEDLDLDMDLDLDTVRFLEDNGWPVNPSSF 300
Query: 301 QLVPASSTEXXXXXXXXXXXXXXXXSQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVV 360
QLVPASSTE SQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVV
Sbjct: 301 QLVPASSTEAVAAAAAANDVDGVANSQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVV 360
Query: 361 DCGARMSTGRGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILE 420
DCGARMSTGRGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILE
Sbjct: 361 DCGARMSTGRGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILE 420
Query: 421 ETIAYLKVLEKRVKELESSSEPSHQRATETGQQRRCEITGKELVSEIGVSGGGDAGREHH 480
ETIAYLKVLEKRVKELESSSEPSHQRATETGQQRRCEITGKELVSEIGVSGGGDAGREHH
Sbjct: 421 ETIAYLKVLEKRVKELESSSEPSHQRATETGQQRRCEITGKELVSEIGVSGGGDAGREHH 480
Query: 481 HVNVTVTDKVVLLEVQCRWKELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAKFAC 540
HVNVTVTDKVVLLEVQCRWKELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAKFAC
Sbjct: 481 HVNVTVTDKVVLLEVQCRWKELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAKFAC 540
Query: 541 SGSVAPGMISEALQKAIGG 559
SGSVAPGMISEALQKAIGG
Sbjct: 541 SGSVAPGMISEALQKAIGG 559
>Os11g0258700 Similar to Ra
Length = 566
Score = 311 bits (798), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 234/489 (47%), Positives = 279/489 (57%), Gaps = 104/489 (21%)
Query: 132 LPGKSYASNASVWLRNAQSADSKTFLRSLLAKSASIQTIICIPF-TSGVLELGTTDPVLE 190
LPGKS+ASN VWL NAQSAD K F R+L+AK TI+C+PF GVLELGTTDPV E
Sbjct: 119 LPGKSFASNEYVWLSNAQSADRKLFHRALIAK-----TIVCVPFIMHGVLELGTTDPVSE 173
Query: 191 DPKLVNRIVAYFQELQFPICLEVLMSTSPSP---NETEDADIVSEGLITH--NAIEEGQM 245
DP LV+RI A L T P +E ADIV + H A+E
Sbjct: 174 DPALVDRITAS------------LWDTPPRAAFSSEAGVADIVVFEDLDHGNTAVEATTT 221
Query: 246 VVSDE-------------CVSNANRD--PITME-IDELYSIYEXXXXXXXXXXXTVRFLE 289
+V E C SNA+ D ITM+ I ELYS+ E + L+
Sbjct: 222 MVPGEPEPHAVAGGEVAECESNAHNDLEQITMDDIGELYSLCEE-----------LDVLD 270
Query: 290 DNG--WPVNP-SSFQLVP-ASSTEXXXXXXXXXXXXXXX-XSQVSCFMAWK-SAKSNEM- 342
D+ W +P SSFQLVP A +T+ S F+AWK + S+E+
Sbjct: 271 DDSSSWVADPWSSFQLVPTAEATDVDDAVVAALGAIDGSCRPSPSSFVAWKRTPDSDEVQ 330
Query: 343 AVPVVTGIESQKLLKKVV-DCGARMSTGRGSRAALTQESG--IKNHVISERRRREKLNEM 399
AVP+++G QKLLKK V GA M+ GS A +T + G IKNHV+SERRRREKL EM
Sbjct: 331 AVPLISGEPPQKLLKKAVAGAGAWMNNADGSAATMTTDQGSSIKNHVMSERRRREKLKEM 390
Query: 400 FLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSEPSHQRATETGQQRRCEIT 459
FLILKS VDKASIL ETIAYLK LEKRV+ELESSS+PS R ET ++R C+ T
Sbjct: 391 FLILKS-------VDKASILAETIAYLKELEKRVEELESSSQPS-PRPMETTRRRCCKST 442
Query: 460 GKELVSEIGVSGGGDAGR----------EHHH----VNVTVTD-KVVLLEVQCRWKELVM 504
GK+ VS G A R E H VNVT+ D K +LLE+QC+WKEL+M
Sbjct: 443 GKK------VSAGARAKRKAPAPEDTDGERRHCVSNVNVTIMDNKELLLELQCQWKELLM 496
Query: 505 TRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAK---------------FACSGSVAPGMI 549
TRVFDAIK + LDVLSVQAS DGLLGLKIQAK FA +V PGMI
Sbjct: 497 TRVFDAIKGVSLDVLSVQASTSDGLLGLKIQAKVVVSAAKSSQQICSIFASPAAVEPGMI 556
Query: 550 SEALQKAIG 558
+EAL+KAI
Sbjct: 557 TEALRKAIA 565
>Os04g0557500 Similar to Transcriptional activator Ra homolog (Fragment)
Length = 180
Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/156 (86%), Positives = 143/156 (91%)
Query: 1 MASAPPVQEEPLQPGTNHFRSLLAAAVRSISWSYAIFWSISTSCPGVLTWNDGFYNGVVK 60
MASAPPVQEE LQPGTNHFRS LAAAVRSISWSY IFWS STS PGVLTWNDGFYNG VK
Sbjct: 1 MASAPPVQEEALQPGTNHFRSRLAAAVRSISWSYTIFWSTSTSLPGVLTWNDGFYNGEVK 60
Query: 61 TRKISNSADLTAGQLVVQRSEQLRELYYSLLSGECDHRARRPIAALSPEDLADTEWYYVV 120
TRKISN DLTA QLV++RSEQL ELYYSLLSGECDHRAR+P+AALSPED+ADTEWYYVV
Sbjct: 61 TRKISNLEDLTADQLVLRRSEQLSELYYSLLSGECDHRARKPVAALSPEDIADTEWYYVV 120
Query: 121 CMTYSFQPGQGLPGKSYASNASVWLRNAQSADSKTF 156
CMTY+F+PGQGLPG+SYASN SVWL NAQSADSKT
Sbjct: 121 CMTYAFRPGQGLPGRSYASNRSVWLCNAQSADSKTL 156
>Os01g0576800
Length = 281
Score = 285 bits (728), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 137/184 (74%), Positives = 155/184 (84%), Gaps = 3/184 (1%)
Query: 7 VQEEPLQPGTNHFRSLLAAAVRSISWSYAIFWSISTSCPGVLTWNDGFYNGVVKTRKISN 66
QEEPLQPGT FR LAAAVRSISW+YAIFWSIST+ PGVLTWNDGFYNG +KTRKI N
Sbjct: 52 FQEEPLQPGTMQFRKQLAAAVRSISWTYAIFWSISTTRPGVLTWNDGFYNGEIKTRKIEN 111
Query: 67 S--ADLTAGQLVVQRSEQLRELYYSLLSGE-CDHRARRPIAALSPEDLADTEWYYVVCMT 123
+ +LTA QL++QRSEQLRELY SLLSGE D + RRP+ ALSPEDL + EWYYVVCMT
Sbjct: 112 NLVTELTAEQLLLQRSEQLRELYNSLLSGESADQQRRRPVTALSPEDLGNVEWYYVVCMT 171
Query: 124 YSFQPGQGLPGKSYASNASVWLRNAQSADSKTFLRSLLAKSASIQTIICIPFTSGVLELG 183
Y+F+PGQ +PGKS+ASN WL NAQSADSK F R LLAK+ASIQTI+C+PF +GVLELG
Sbjct: 172 YAFRPGQCVPGKSFASNGCAWLCNAQSADSKAFPRKLLAKNASIQTIVCVPFMTGVLELG 231
Query: 184 TTDP 187
TTDP
Sbjct: 232 TTDP 235
>Os01g0577300 Similar to Transcriptional activator Rb homolog (Fragment)
Length = 265
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/249 (55%), Positives = 166/249 (66%), Gaps = 32/249 (12%)
Query: 326 SQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVVDCG-ARMSTGRGSRAALTQESGIKN 384
S SCF+ WK + ++ AV G +Q+LLKKVV G A M+ GS IKN
Sbjct: 33 SPASCFVPWKRTELDKEAV--AGGEAAQRLLKKVVGGGGAWMNRAAGS-------CSIKN 83
Query: 385 HVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSEPSH 444
HV+SERRRREKLNEMFLILKS+VPSI KVDKASIL ETIAYLK LE+RV+ELES
Sbjct: 84 HVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETIAYLKELERRVQELESG----- 138
Query: 445 QRATETGQQRRCEITGKELVSEIGVSGGGDAGREHHH-------------VNVTVTDKVV 491
++ + +++ C T ++ G GG A +EHHH V V V DK
Sbjct: 139 KKVSRPAKRKPCSET---IIGGGGGGGGAGAVKEHHHWVLSESQEGTPSDVRVIVMDKDE 195
Query: 492 L-LEVQCRWKELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAKFACSGSVAPGMIS 550
L LEVQCRWKEL+MTRVFDAIKSL LDV+SVQASAPDGLLGLKI+AK+A S +V P MIS
Sbjct: 196 LHLEVQCRWKELMMTRVFDAIKSLRLDVVSVQASAPDGLLGLKIRAKYASSAAVVPAMIS 255
Query: 551 EALQKAIGG 559
E L+ A+ G
Sbjct: 256 ETLRTAVAG 264
>Os01g0576100 Similar to Oryza longistaminata transcriptional activator Rb
homolog (Fragment)
Length = 314
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/229 (54%), Positives = 144/229 (62%), Gaps = 40/229 (17%)
Query: 326 SQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVVDCG-ARMSTGRGSRAALTQESGIKN 384
S SCF+ WK + ++ AV G +Q+LLKK V G A M+ GS IKN
Sbjct: 104 SPASCFVPWKRTELDKQAV-AGGGEAAQRLLKKAVGGGGAWMNRAAGS--------SIKN 154
Query: 385 HVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSEPSH 444
HV+SERRR EKLNEMFL LKS+VPSI KVDKAS L ETIAYLK LE+RV+ELES + S
Sbjct: 155 HVMSERRRWEKLNEMFLTLKSLVPSIDKVDKASSLAETIAYLKELERRVQELESGKKVSR 214
Query: 445 QRATETGQQRRCEITGKELVSEIGVSGGGDAG--REHHH-------------VNVTVTDK 489
+ +R + GGGDAG +EHHH V V V DK
Sbjct: 215 PAKRKPCSER--------------IIGGGDAGAVKEHHHWVLSESQEGTPSNVRVIVMDK 260
Query: 490 VVL-LEVQCRWKELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAK 537
L LEV CRWKEL+MTR+FDAIKSL LDVLSVQASAP+GLLGLKI+AK
Sbjct: 261 DELHLEVHCRWKELMMTRLFDAIKSLRLDVLSVQASAPNGLLGLKIRAK 309
>Os07g0211500
Length = 658
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 118/216 (54%), Gaps = 22/216 (10%)
Query: 23 LAAAVRSISWSYAIFWSISTSCPGVLTWNDGFYNGVVKTRKIS------NSADLTAGQLV 76
L A +S+ W+Y++ W + L W +G YNG VKTRK + + A
Sbjct: 10 LQAVAQSLRWTYSLLWQLCPHQGSSLVWGEGHYNGAVKTRKSTVMQPPPAEEEDDADHAA 69
Query: 77 VQRSEQLRELYYSLL-SGECDH---------RARRPIAALSPEDLADTEWYYVVCMTYSF 126
RS QLRELY L +GE +RRP AALSPEDL +TEW++++ +YSF
Sbjct: 70 RHRSRQLRELYDWLQQAGENSSGGVQTSSTTASRRPGAALSPEDLTETEWFFLMSASYSF 129
Query: 127 QPGQGLPGKSYASNASVWLRNAQSADSKTFLRSLLAKSASIQTIICIPFTSGVLELGTTD 186
PG GLPG+++A VWL A DSK FLR++LAK T++CIP GVLE+GTT+
Sbjct: 130 PPGIGLPGRAFARRGHVWLTGANEVDSKVFLRAILAK-----TVVCIPVVDGVLEIGTTE 184
Query: 187 PVLEDPKLVNRIVAYFQELQFPICLEVLMSTSPSPN 222
V ED L+ F + Q I ++ +S + N
Sbjct: 185 KVEEDMGLIQYARGIFMD-QHGIHMKPTLSQHSTSN 219
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 16/124 (12%)
Query: 326 SQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVV------DC---GARMSTGRGSRAAL 376
S+ S F W + + ++ +++ +Q++LK ++ C GA RG + A
Sbjct: 409 SEKSSFSRWTTPEGSDDNKTMISPGTTQRMLKSILMIVPSSHCSYRGAETPESRGGKGA- 467
Query: 377 TQESGIK---NHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRV 433
SG NHV+ ERRRREKLNE F+IL+S+VP + K+DKASIL +TI Y+K L R+
Sbjct: 468 ---SGCHPSANHVLKERRRREKLNEKFIILRSLVPFMTKMDKASILGDTIEYVKQLRNRI 524
Query: 434 KELE 437
+ELE
Sbjct: 525 QELE 528
>Os01g0575900
Length = 105
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/100 (69%), Positives = 80/100 (80%), Gaps = 2/100 (2%)
Query: 69 DLTAGQLVVQRSEQLRELYYSLLSGEC--DHRARRPIAALSPEDLADTEWYYVVCMTYSF 126
+LTA QL++QRSEQLRELY SLLSGEC R RRP+ ALSPEDL + EW+Y+VCMTY+F
Sbjct: 2 ELTAEQLLLQRSEQLRELYSSLLSGECADQQRRRRPVTALSPEDLGNMEWFYMVCMTYAF 61
Query: 127 QPGQGLPGKSYASNASVWLRNAQSADSKTFLRSLLAKSAS 166
+PGQ LPGKS+ASN WL NAQSADSK F R LLA+ S
Sbjct: 62 RPGQCLPGKSFASNGCAWLCNAQSADSKAFPRKLLARQLS 101
>Os10g0575000 Similar to Transcription factor MYC7E (Fragment)
Length = 699
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 31 SWSYAIFWSIS---TSCPGVLTWNDGFYNGVVKTRKISNSADLTAGQLVVQRSEQLRELY 87
+W+YAIFW S ++ +L W DG+Y G ++ S+ A R LREL
Sbjct: 82 TWTYAIFWQSSIDVSTGASLLGWGDGYYKGCDDDKRKQRSSTPAAAAEQEHRKRVLRELN 141
Query: 88 YSLLSGECDHRARRPIAALSPEDLADTEWYYVVCMTYSFQPGQGLPGKSYASNASVWLRN 147
SL++G P A+ E++ DTEW+++V MT SF G GLPG++ + W+
Sbjct: 142 -SLIAGA----GAAPDEAVE-EEVTDTEWFFLVSMTQSFPNGLGLPGQALFAAQPTWI-- 193
Query: 148 AQSADSKTFLRSLLAKSASIQTIICIPFTSGVLELGTTDPVLEDPKLVNRIVAYFQ 203
A S R+ A + ++T++C+P +GVLELG+TD + + + RI A F
Sbjct: 194 ATGLSSAPCDRARQAYTFGLRTMVCLPLATGVLELGSTDVIFQTGDSIPRIRALFN 249
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 370 RGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVL 429
RG + A +E + NHV +ER+RREKLN+ F L+++VP++ K+DKAS+L + I+Y+ L
Sbjct: 511 RGRKPANGREEPL-NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINEL 569
Query: 430 EKRVKELESSSEPSHQRATETGQQRRCEITGKELVSEIGVSGGGDAGREHHHVNVTVTDK 489
++ LE+ E + ++R G + R H V + K
Sbjct: 570 RGKLTALETDKETLQSQMESLKKERDARPPAPSGGGGDGGA------RCHA---VEIEAK 620
Query: 490 VVLLE----VQCRWKELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAKFA 539
++ LE VQC + R+ A++ L LDV S L+ ++ K A
Sbjct: 621 ILGLEAMIRVQCHKRNHPAARLMTALRELDLDVYHASVSVVKDLMIQQVAVKMA 674
>U39866
Length = 121
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 74/134 (55%), Gaps = 31/134 (23%)
Query: 387 ISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELES----SSEP 442
+SERRRREKLNEMFLILKS+VPSI KVDKASIL E I YLK LE+R +ELES SS P
Sbjct: 1 MSERRRREKLNEMFLILKSLVPSIDKVDKASILAEPIPYLKDLERRFQELESGKKMSSPP 60
Query: 443 SHQRATETGQQRRCEITGKELVSEIGVSGGGDAGREHHH-------------VNVTVTDK 489
+ET I G V G HHH V V + DK
Sbjct: 61 KRNPCSETI------IGGAARAGPGAVKG-------HHHWVLSESQEGTPSDVRVIIMDK 107
Query: 490 VVL-LEVQCRWKEL 502
L LEV CRWKEL
Sbjct: 108 DELHLEVHCRWKEL 121
>Os01g0575766
Length = 94
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 39/46 (84%)
Query: 1 MASAPPVQEEPLQPGTNHFRSLLAAAVRSISWSYAIFWSISTSCPG 46
MASAP QEEPLQPGT FR LAAAVRSISW+YAIFWSIST+ PG
Sbjct: 49 MASAPSAQEEPLQPGTMQFRKQLAAAVRSISWTYAIFWSISTTRPG 94
>Os12g0632600
Length = 338
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 77/137 (56%), Gaps = 8/137 (5%)
Query: 382 IKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSE 441
+++H+I+ERRRREK+N+ F+ L +++P + K+DKA+IL + + Y+K L+++VK LE
Sbjct: 165 VQDHIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQEKVKTLEEEDG 224
Query: 442 PSHQRATETGQQRRCEITGKELVSEIGVSGGGDAGREHHHVNVTVTDKVVLLEVQCRWKE 501
A R+ +G++ +G GD + V V ++ VL+ VQC
Sbjct: 225 GGRPAAMVV---RKSSCSGRQ-----SAAGDGDGEGRVPEIEVRVWERSVLVRVQCGNSR 276
Query: 502 LVMTRVFDAIKSLCLDV 518
++ R+ ++ L L +
Sbjct: 277 GLLVRLLSEVEELRLGI 293
>Os01g0235700 Similar to BHLH transcription factor (Fragment)
Length = 617
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 17 NHFRSLLAAAVRSISWSYAIFWSISTSCPG--VLTWNDGF----YNGVVKTRKISNSADL 70
N + L+ + W+YAIFW +S + G VL W DG ++G + + S +
Sbjct: 62 NRLQELVESDRPGAGWNYAIFWQLSRTKSGDLVLGWGDGSCREPHDGEMGPAASAGSDE- 120
Query: 71 TAGQLVVQRSEQLRELYYSLLSGECDHRARRPIAALSPEDLADTEWYYVVCMTYSFQPGQ 130
A Q + +R L+ L+ + G D P + + DTE +++ M ++F
Sbjct: 121 -AKQRMRKRV--LQRLHSAF--GGVDEEDYAP----GIDQVTDTEMFFLASMYFAFPRRA 171
Query: 131 GLPGKSYASNASVWLRNAQSA--DSKTFLRSLLAKSASIQTIICIPFTSGVLELGTTDPV 188
G PG+ +A+ +W+ N + + R LA +A +TI+ +PF +GVLELG+ V
Sbjct: 172 GGPGQVFAAGVPLWIPNTERNVFPANYCYRGYLANAAGFRTIVLVPFETGVLELGSMQQV 231
Query: 189 LEDPKLVNRIVAYF 202
E + I + F
Sbjct: 232 AESSDTLQTIRSVF 245
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 384 NHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSE 441
NHV +ER+RREKLN+ F L+++VP+I K+DKAS+L + I Y+ L+K++KE+E E
Sbjct: 463 NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLKEMEVERE 520
>Os01g0705700 Similar to Transcription factor ICE1 (Inducer of CBF expression 1)
(Basic helix- loop-helix protein 116) (bHLH116)
(AtbHLH116)
Length = 460
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 31 SWSYAIFWS--------ISTSCPGVLTWNDGFYNGVVKTRKISNSADLTAGQLVVQRSEQ 82
+W+Y IFW + VL W DG R + ++ A + V R
Sbjct: 56 AWTYGIFWQESRGAGAASGRAARAVLGWGDG------HCRDGAGHGEVGAAERSVARKRV 109
Query: 83 LRELYYSLLSGECDHRARRPIAALSPEDLADTEWYYVVCMTYSFQPGQGLPGKSYASNAS 142
L L+ G+ D AL + + E Y++ M +SF G G PG++ AS
Sbjct: 110 LLRLHALYGGGDEDGADY----ALRLDRVTGAEMYFLASMYFSFPEGSGGPGRALASGRH 165
Query: 143 VWLR-----NAQSADSKTFLRSLLAKSASIQTIICIPFTSGVLELGTTDPVLEDPKLVNR 197
W + + ++RS LA+SA ++T++ +P GVLELG+ + E P+++
Sbjct: 166 AWADVDPHPSGSGSAPGWYVRSSLAQSAGLRTVVFLPCKGGVLELGSVVAIRETPEVLRA 225
Query: 198 IVAYFQELQFP 208
I + + + P
Sbjct: 226 IQSAMRAVPAP 236
>Os03g0229100
Length = 451
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 23/167 (13%)
Query: 383 KNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSEP 442
+ HVI+ER+RREKL + F+ L +IVP + K DK S+L TI Y+K LE++VK LE S
Sbjct: 286 QEHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQLEEKVKALEEGS-- 343
Query: 443 SHQRATE--TGQQRRCEITGKELVSEIGVSGGGDAGREHHH---------VNVTVTDKVV 491
+R E T + +C IT + GG A V ++ V
Sbjct: 344 --RRTAEPTTAFESKCRIT-------VDDDDGGSASSGTDDGSSSSSSPTVEASIHGNTV 394
Query: 492 LLEVQCRWKELVMTRVFDAIKSLCLDVLSVQ-ASAPDGLLGLKIQAK 537
LL++ C+ + ++ + ++ L +++ D L + I AK
Sbjct: 395 LLKICCKERRGLLVMILSELEKQGLSIINTSVVPFTDSCLNITITAK 441
>Os03g0725800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 359
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
Query: 383 KNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSEP 442
+ H+++ER+RREKL++ F+ L IVP + K+DKAS+L + I Y+K L+ +VK LE E
Sbjct: 180 QEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLE---EE 236
Query: 443 SHQRATETG-QQRRCEITGKELVSEIGVS-----GGGDAGREHHHVNVTVTDKVVLLEVQ 496
+ +R E ++ +++ + + G S GG+A + V+++ VL+++
Sbjct: 237 ARRRPVEAAVLVKKSQLSADD---DDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIH 293
Query: 497 CRWKELVMTRVFDAIKSLCLDVLSV 521
C ++ + ++++ L +++
Sbjct: 294 CENRKGALITALSEVETIGLTIMNT 318
>Os10g0104300
Length = 325
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 362 CGARMSTGRGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEE 421
C RG R A S ++ HVI+ER+RREK+++ F L SIVP I K DK S+L
Sbjct: 137 CSPLSEMKRGGRRA---TSSMQEHVIAERKRREKMHQQFTTLASIVPEITKTDKVSVLGS 193
Query: 422 TIAYLKVLEKRVKELE------SSSEPSHQRATETGQQRRCEITGKELVSEIGVSGGGDA 475
TI Y+ L +RVK L+ S+ P + G + G EI V
Sbjct: 194 TIEYVHHLRERVKILQDIQSMGSTQPPISDARSRAGSGDDEDDDGNNNEVEIKVEAN--- 250
Query: 476 GREHHHVNVTVTDKVVLLEVQCRWKELVMTRVFDAIKSLCLDVLSV 521
+ VLL V C K+ V+ ++ ++ L L ++
Sbjct: 251 ----------LQGTTVLLRVVCPEKKGVLIKLLTELEKLGLSTMNT 286
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,255,484
Number of extensions: 652200
Number of successful extensions: 2097
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 2075
Number of HSP's successfully gapped: 20
Length of query: 559
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 453
Effective length of database: 11,501,117
Effective search space: 5210006001
Effective search space used: 5210006001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)