Os01g0576100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oryza longistaminata transcriptional activator Rb homolog (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0576100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Oryza longistaminata transcriptional activator Rb homolog (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 345.34 | 0.873 | 5.34 | -3.65 | 1.88 | 1.97 | -0.483 | -2.43 | -1.75 | 10.2 | 10.04 | 1438 | -- | -- |
| 355.55 | 0.878 | 5.33 | -3.32 | 1.89 | 2.01 | -0.375 | -- | -1.69 | 10.3 | 10.05 | 1437 | -- | -- |
| 346.21 | 0.867 | 5.33 | -3.67 | 1.89 | 1.98 | -- | -2.38 | -1.75 | 10.2 | 10.04 | 1435 | -- | -- |
| 355.92 | 0.879 | 5.32 | -3.33 | 1.92 | 2.03 | -- | -- | -1.68 | 10.2 | 10.05 | 1435 | -- | -- |
| 517.69 | 1.06 | 5.39 | -3.62 | -- | 2.5 | -- | -2.39 | -1.77 | -- | 10.01 | 1587 | -- | -- |
| 460.17 | 1.01 | 5.14 | -2.66 | 1.84 | -- | -0.692 | -- | -1.02 | 10.1 | -- | -- | -- | -- |
| 462.01 | 1.01 | 5.14 | -2.68 | 1.85 | -- | -- | -- | -1.03 | 10 | -- | -- | -- | -- |
| 471.14 | 1.02 | 5.21 | -2.71 | -- | 1.32 | -- | -- | -1.08 | -- | 1.866 | 1555 | -- | -- |
| 539.05 | 1.08 | 5.16 | -- | 1.9 | 2.17 | -- | -- | -1.07 | 10.4 | 9.05 | 1461 | -- | -- |
| 667.45 | 1.21 | 5.19 | -2.71 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 651.89 | 1.19 | 5.08 | -- | 1.86 | -- | -- | -- | -0.728 | 10.1 | -- | -- | -- | -- |
| 664.21 | 1.2 | 5.14 | -- | -- | 1.32 | -- | -- | -0.781 | -- | 1.866 | 1555 | -- | -- |
| 860.82 | 1.37 | 5.13 | -- | -- | -- | -- | -- | -0.728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 342.45 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 2 | 342.80 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 6 | 344.31 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 7 | 344.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 9 | 345.46 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 10 | 345.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 89 | 346.14 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 92 | 346.58 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 93 | 346.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 94 | 346.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 111 | 346.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 113 | 346.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 116 | 346.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 219 | 351.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 277 | 353.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 329 | 354.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 486 | 357.47 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 487 | 357.53 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 530 | 358.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 579 | 359.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 581 | 359.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 582 | 359.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 18 |
| 584 | 359.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 591 | 359.36 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 618 | 359.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 631 | 359.70 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 695 | 359.92 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 742 | 360.57 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 753 | 360.87 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 760 | 360.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 761 | 361.03 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 762 | 361.05 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 763 | 361.09 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 795 | 361.66 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 821 | 362.02 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 12 |
| 826 | 362.10 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 827 | 362.10 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 840 | 362.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 16 |
| 852 | 362.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 965 | 363.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 981 | 363.65 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 23 |