BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0576100 Os01g0576100|Os01g0576100
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0576100 Similar to Oryza longistaminata transcriptiona... 608 e-174
Os01g0577300 Similar to Transcriptional activator Rb homolo... 426 e-120
Os11g0258700 Similar to Ra 201 4e-52
Os04g0557200 Similar to Anthocyanin regulatory B protein (F... 194 6e-50
U39866 187 7e-48
Os12g0632600 75 5e-14
Os09g0519100 Similar to BHLH transcription factor (Fragment) 75 9e-14
Os07g0211500 74 1e-13
>Os01g0576100 Similar to Oryza longistaminata transcriptional activator Rb
homolog (Fragment)
Length = 314
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/314 (95%), Positives = 301/314 (95%)
Query: 1 MKKLRLSIHYEXXXXXXXXXXXXXLTKETGDANTVLIDDLFLAHSDAILAGGDQEDHQLG 60
MKKLRLSIHYE LTKETGDANTVLIDDLFLAHSDAILAGGDQEDHQLG
Sbjct: 1 MKKLRLSIHYEPISSGTPSSPSSPLTKETGDANTVLIDDLFLAHSDAILAGGDQEDHQLG 60
Query: 61 NDLGQQQAATAMEIDDDMIYSLIRNWDNDSSSSWIELLDHVVVSPASCFVPWKRTELDKQ 120
NDLGQQQAATAMEIDDDMIYSLIRNWDNDSSSSWIELLDHVVVSPASCFVPWKRTELDKQ
Sbjct: 61 NDLGQQQAATAMEIDDDMIYSLIRNWDNDSSSSWIELLDHVVVSPASCFVPWKRTELDKQ 120
Query: 121 AVAGGGEAAQRLLKKAVGGGGAWMNRAAGSSIKNHVMSERRRWEKLNEMFLTLKSLVPSI 180
AVAGGGEAAQRLLKKAVGGGGAWMNRAAGSSIKNHVMSERRRWEKLNEMFLTLKSLVPSI
Sbjct: 121 AVAGGGEAAQRLLKKAVGGGGAWMNRAAGSSIKNHVMSERRRWEKLNEMFLTLKSLVPSI 180
Query: 181 DKVDKASSLAETIAYLKELERRVQELESGKKVSRPAKRKPCSERIIGGGDAGAVKEHHHW 240
DKVDKASSLAETIAYLKELERRVQELESGKKVSRPAKRKPCSERIIGGGDAGAVKEHHHW
Sbjct: 181 DKVDKASSLAETIAYLKELERRVQELESGKKVSRPAKRKPCSERIIGGGDAGAVKEHHHW 240
Query: 241 VLSESQEGTPSNVRVIVMDKDELHLEVHCRWKELMMTRLFDAIKSLRLDVLSVQASAPNG 300
VLSESQEGTPSNVRVIVMDKDELHLEVHCRWKELMMTRLFDAIKSLRLDVLSVQASAPNG
Sbjct: 241 VLSESQEGTPSNVRVIVMDKDELHLEVHCRWKELMMTRLFDAIKSLRLDVLSVQASAPNG 300
Query: 301 LLGLKIRAKVVSLT 314
LLGLKIRAKVVSLT
Sbjct: 301 LLGLKIRAKVVSLT 314
>Os01g0577300 Similar to Transcriptional activator Rb homolog (Fragment)
Length = 265
Score = 426 bits (1096), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/246 (90%), Positives = 230/246 (93%), Gaps = 6/246 (2%)
Query: 72 MEIDDDMIYSLIRNWDNDSSSSWIELLDHVVVSPASCFVPWKRTELDKQAVAGGGEAAQR 131
MEIDDD+IYSLIRNWDNDSSSSWIELLDH +VSPASCFVPWKRTELDK+AVA GGEAAQR
Sbjct: 1 MEIDDDVIYSLIRNWDNDSSSSWIELLDHAIVSPASCFVPWKRTELDKEAVA-GGEAAQR 59
Query: 132 LLKKAVGGGGAWMNRAAGS-SIKNHVMSERRRWEKLNEMFLTLKSLVPSIDKVDKASSLA 190
LLKK VGGGGAWMNRAAGS SIKNHVMSERRR EKLNEMFL LKSLVPSIDKVDKAS L+
Sbjct: 60 LLKKVVGGGGAWMNRAAGSCSIKNHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILS 119
Query: 191 ETIAYLKELERRVQELESGKKVSRPAKRKPCSERII----GGGDAGAVKEHHHWVLSESQ 246
ETIAYLKELERRVQELESGKKVSRPAKRKPCSE II GGG AGAVKEHHHWVLSESQ
Sbjct: 120 ETIAYLKELERRVQELESGKKVSRPAKRKPCSETIIGGGGGGGGAGAVKEHHHWVLSESQ 179
Query: 247 EGTPSNVRVIVMDKDELHLEVHCRWKELMMTRLFDAIKSLRLDVLSVQASAPNGLLGLKI 306
EGTPS+VRVIVMDKDELHLEV CRWKELMMTR+FDAIKSLRLDV+SVQASAP+GLLGLKI
Sbjct: 180 EGTPSDVRVIVMDKDELHLEVQCRWKELMMTRVFDAIKSLRLDVVSVQASAPDGLLGLKI 239
Query: 307 RAKVVS 312
RAK S
Sbjct: 240 RAKYAS 245
>Os11g0258700 Similar to Ra
Length = 566
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 190/347 (54%), Gaps = 69/347 (19%)
Query: 25 LTKETGDANTVLIDDL----FLAHSDAILAGGDQEDHQL-GNDLGQQQAATAMEID---- 75
+ E G A+ V+ +DL + + G+ E H + G ++ + ++ +++
Sbjct: 194 FSSEAGVADIVVFEDLDHGNTAVEATTTMVPGEPEPHAVAGGEVAECESNAHNDLEQITM 253
Query: 76 DDM--IYSLIRNWD--NDSSSSWI----------------ELLDHVVV-----------S 104
DD+ +YSL D +D SSSW+ ++ D VV S
Sbjct: 254 DDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDVDDAVVAALGAIDGSCRPS 313
Query: 105 PASCFVPWKRTELDKQAVAG---GGEAAQRLLKKAVGGGGAWMNRA----------AGSS 151
P+S FV WKRT + A GE Q+LLKKAV G GAWMN A GSS
Sbjct: 314 PSS-FVAWKRTPDSDEVQAVPLISGEPPQKLLKKAVAGAGAWMNNADGSAATMTTDQGSS 372
Query: 152 IKNHVMSERRRWEKLNEMFLTLKSLVPSIDKVDKASSLAETIAYLKELERRVQELESGKK 211
IKNHVMSERRR EKL EMFL LKS VDKAS LAETIAYLKELE+RV+ELES +
Sbjct: 373 IKNHVMSERRRREKLKEMFLILKS-------VDKASILAETIAYLKELEKRVEELESSSQ 425
Query: 212 VS-RP--AKRKPCSERIIGGGDAGAVKEHHHWVLSESQEG----TPSNVRVIVMDKDELH 264
S RP R+ C + AGA + E +G SNV V +MD EL
Sbjct: 426 PSPRPMETTRRRCCKSTGKKVSAGA-RAKRKAPAPEDTDGERRHCVSNVNVTIMDNKELL 484
Query: 265 LEVHCRWKELMMTRLFDAIKSLRLDVLSVQASAPNGLLGLKIRAKVV 311
LE+ C+WKEL+MTR+FDAIK + LDVLSVQAS +GLLGLKI+AKVV
Sbjct: 485 LELQCQWKELLMTRVFDAIKGVSLDVLSVQASTSDGLLGLKIQAKVV 531
>Os04g0557200 Similar to Anthocyanin regulatory B protein (Fragment)
Length = 559
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/235 (53%), Positives = 147/235 (62%), Gaps = 40/235 (17%)
Query: 98 LDHVVVSPASCFVPWKRTELDKQAV-AGGGEAAQRLLKKAVGGGGAWMNRAAGS------ 150
+D V S SCF+ WK + ++ AV G +Q+LLKK V G A M+ GS
Sbjct: 320 VDGVANSQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVVDCG-ARMSTGRGSRAALTQ 378
Query: 151 --SIKNHVMSERRRWEKLNEMFLTLKSLVPSIDKVDKASSLAETIAYLKELERRVQELES 208
IKNHV+SERRR EKLNEMFL LKS+VPSI KVDKAS L ETIAYLK LE+RV+ELES
Sbjct: 379 ESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELES 438
Query: 209 GKKVSRPAKRKPCSER--------------IIGGGDAGAVKEHHHWVLSESQEGTPSNVR 254
+ S + +R + GGGDAG +EHHH V
Sbjct: 439 SSEPSHQRATETGQQRRCEITGKELVSEIGVSGGGDAG--REHHH-------------VN 483
Query: 255 VIVMDKDELHLEVHCRWKELMMTRLFDAIKSLRLDVLSVQASAPNGLLGLKIRAK 309
V V DK L LEV CRWKEL+MTR+FDAIKSL LDVLSVQASAP+GLLGLKI+AK
Sbjct: 484 VTVTDKVVL-LEVQCRWKELVMTRVFDAIKSLCLDVLSVQASAPDGLLGLKIQAK 537
>U39866
Length = 121
Score = 187 bits (476), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 98/121 (80%), Positives = 102/121 (84%), Gaps = 3/121 (2%)
Query: 157 MSERRRWEKLNEMFLTLKSLVPSIDKVDKASSLAETIAYLKELERRVQELESGKKVSRPA 216
MSERRR EKLNEMFL LKSLVPSIDKVDKAS LAE I YLK+LERR QELESGKK+S P
Sbjct: 1 MSERRRREKLNEMFLILKSLVPSIDKVDKASILAEPIPYLKDLERRFQELESGKKMSSPP 60
Query: 217 KRKPCSERII---GGGDAGAVKEHHHWVLSESQEGTPSNVRVIVMDKDELHLEVHCRWKE 273
KR PCSE II GAVK HHHWVLSESQEGTPS+VRVI+MDKDELHLEVHCRWKE
Sbjct: 61 KRNPCSETIIGGAARAGPGAVKGHHHWVLSESQEGTPSDVRVIIMDKDELHLEVHCRWKE 120
Query: 274 L 274
L
Sbjct: 121 L 121
>Os12g0632600
Length = 338
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 152 IKNHVMSERRRWEKLNEMFLTLKSLVPSIDKVDKASSLAETIAYLKELERRVQELESGKK 211
+++H+++ERRR EK+N+ F+ L +++P + K+DKA+ L + + Y+KEL+ +V+ LE
Sbjct: 165 VQDHIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQEKVKTLEEEDG 224
Query: 212 VSRPA----KRKPCSERIIGGGDAGAVKEHHHWVLSESQEGTPSNVRVIVMDKDELHLEV 267
RPA ++ CS R GD EG + V V ++ L + V
Sbjct: 225 GGRPAAMVVRKSSCSGRQSAAGDGDG-------------EGRVPEIEVRVWERSVL-VRV 270
Query: 268 HCRWKELMMTRLFDAIKSLRLDVLSVQA-SAPNGLLGLKIRAKVVSLT 314
C ++ RL ++ LRL + P + + I AK SL+
Sbjct: 271 QCGNSRGLLVRLLSEVEELRLGITHTSVMPFPASTVIITITAKASSLS 318
>Os09g0519100 Similar to BHLH transcription factor (Fragment)
Length = 284
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 128 AAQRLLKKAVGGGGAWMNRAAGSSIKNHVMSERRRWEKLNEMFLTLKSLVPSIDKVDKAS 187
AAQR K+ G R G ++ +HV +ER+R EKLN F L++ VP++ ++DKAS
Sbjct: 89 AAQRPAKRR---GRKPGPRPDGPTV-SHVEAERQRREKLNRRFCDLRAAVPTVSRMDKAS 144
Query: 188 SLAETIAYLKELERRVQELESGKKVSRPAKRKPCSERIIGGGDAGAVKEHHHWVLSESQE 247
LA+ AY+ EL RV LES + + A+ +P S GGG G H +
Sbjct: 145 LLADAAAYIAELRARVARLESDARQAAAARFEPSS---CGGG--GNASYHGGGGGGGAAP 199
Query: 248 GTPSNVRVIVMDKDELHLEVHCRWKELMMTRLFDAIKSLRLDV 290
G V V M +D + V RL A++SL L V
Sbjct: 200 GLDEAVEVRKMGRDAAAVRVTTTGARHAPARLMGALRSLELPV 242
>Os07g0211500
Length = 658
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 28/135 (20%)
Query: 95 IELLDHVVVSPASCFVPWKRTEL---DKQAVAGGGEAAQRLLKKAV-------------- 137
+ + +++ VS S F W E +K ++ G QR+LK +
Sbjct: 400 MNIKNYLPVSEKSSFSRWTTPEGSDDNKTMISPG--TTQRMLKSILMIVPSSHCSYRGAE 457
Query: 138 -----GGGGAWMNRAAGSSIKNHVMSERRRWEKLNEMFLTLKSLVPSIDKVDKASSLAET 192
GG GA + NHV+ ERRR EKLNE F+ L+SLVP + K+DKAS L +T
Sbjct: 458 TPESRGGKGA----SGCHPSANHVLKERRRREKLNEKFIILRSLVPFMTKMDKASILGDT 513
Query: 193 IAYLKELERRVQELE 207
I Y+K+L R+QELE
Sbjct: 514 IEYVKQLRNRIQELE 528
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,931,338
Number of extensions: 479405
Number of successful extensions: 2130
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2126
Number of HSP's successfully gapped: 11
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)