Os11g0258700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ra.
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Os11g0258700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ra.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 233.42 | 0.718 | 3.03 | -0.552 | 0.166 | 1.06 | 0.896 | -2.78 | -0.184 | 13.4 | 0.4 | 1592 | -- | -- |
| 234.77 | 0.714 | 3 | -0.539 | 0.17 | 1.01 | 0.92 | -- | -0.205 | 13.3 | 0.09976 | 2618 | -- | -- |
| 234.4 | 0.713 | 3.02 | -0.622 | 0.182 | 1.16 | -- | -2.42 | -0.176 | 12.9 | 0.1 | 2629 | -- | -- |
| 237.42 | 0.718 | 2.99 | -0.518 | 0.169 | 1.02 | -- | -- | -0.161 | 12.8 | 0.1097 | 2618 | -- | -- |
| 233.15 | 0.711 | 3.02 | -0.608 | -- | 1.1 | -- | -2.17 | -0.136 | -- | 0.1996 | 3932 | -- | -- |
| 245.31 | 0.734 | 3.02 | -0.351 | 0.172 | -- | 0.801 | -- | -0.281 | 12.9 | -- | -- | -- | -- |
| 247.8 | 0.737 | 3.02 | -0.323 | 0.179 | -- | -- | -- | -0.278 | 11.5 | -- | -- | -- | -- |
| 236.24 | 0.716 | 2.99 | -0.608 | -- | 1.01 | -- | -- | -0.147 | -- | 6.493e-08 | 3927 | -- | -- |
| 243.83 | 0.727 | 2.98 | -- | 0.167 | 0.805 | -- | -- | -0.132 | 12.6 | 0.3 | 2514 | -- | -- |
| 249.82 | 0.739 | 3.02 | -0.328 | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
| 250.55 | 0.74 | 3.01 | -- | 0.183 | -- | -- | -- | -0.242 | 11.6 | -- | -- | -- | -- |
| 244.47 | 0.728 | 2.98 | -- | -- | 0.734 | -- | -- | -0.109 | -- | 0.3 | 3927 | -- | -- |
| 252.65 | 0.742 | 3.01 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.74 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 11 | 224.74 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 21 | 228.23 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 25 | 230.99 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 26 | 231.08 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 1 | 8 |
| 44 | 231.76 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 49 | 232.00 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 13 |
| 50 | 232.05 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 53 | 232.09 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 62 | 232.46 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 80 | 232.84 | wind | 1.0 | 4320 | < th | dose dependent | sin | 10 | NA |
| 94 | 233.06 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 138 | 233.70 | wind | 1.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 158 | 233.98 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 17 |
| 163 | 234.01 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 164 | 234.04 | wind | 1.0 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 173 | 234.11 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 14 | 19 |
| 183 | 234.17 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 191 | 234.21 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 204 | 234.33 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 214 | 234.41 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 215 | 234.42 | wind | 1.0 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 216 | 234.42 | wind | 1.0 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 250 | 234.61 | wind | 1.0 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 261 | 234.69 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 266 | 234.74 | wind | 1.0 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 284 | 234.82 | wind | 1.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 286 | 234.84 | wind | 1.0 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 330 | 235.08 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 346 | 235.19 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 349 | 235.23 | wind | 3.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 352 | 235.24 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 354 | 235.25 | wind | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 362 | 235.28 | wind | 1.0 | 4320 | > th | dose independent | rect. | 20 | 13 |
| 384 | 235.41 | wind | 1.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 396 | 235.45 | wind | 3.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 410 | 235.52 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 412 | 235.53 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 418 | 235.57 | wind | 1.0 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 420 | 235.58 | wind | 1.0 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 424 | 235.59 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 464 | 235.64 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 473 | 235.68 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 495 | 235.75 | wind | 1.0 | 1440 | > th | dose independent | rect. | 24 | 12 |
| 503 | 235.79 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 521 | 235.86 | atmosphere | 1005.0 | 30 | > th | dose independent | sin | 23 | NA |
| 563 | 235.96 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 607 | 236.08 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 6 | 12 |
| 611 | 236.09 | wind | 1.0 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 643 | 236.17 | wind | 1.0 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 663 | 236.21 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 676 | 236.25 | wind | 1.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 693 | 236.30 | wind | 1.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 726 | 236.38 | atmosphere | 1005.0 | 90 | < th | dose independent | sin | 1 | NA |
| 744 | 236.42 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 762 | 236.46 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 6 | 17 |
| 773 | 236.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 774 | 236.50 | wind | 1.0 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 776 | 236.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 782 | 236.51 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 807 | 236.56 | wind | 1.0 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 816 | 236.58 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 859 | 236.66 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 18 | 2 |
| 927 | 236.76 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 956 | 236.78 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 9 | 3 |
| 967 | 236.79 | wind | 1.0 | 10 | < th | dose independent | rect. | 12 | 2 |
| 981 | 236.82 | wind | 1.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 986 | 236.82 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 993 | 236.83 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 1 |