BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0518200 Os10g0518200|J065209A10
(134 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0518200 Similar to Cytochome b5 (Fragment) 277 2e-75
Os05g0108800 Cytochrome b5 177 2e-45
Os01g0971500 Similar to Cytochrome b5 172 4e-44
Os02g0649800 Similar to Cytochrome B5 homolog (Fragment) 163 3e-41
D10954 123 5e-29
Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fra... 112 6e-26
Os08g0386300 Cytochrome b5 domain containing protein 70 4e-13
Os09g0338500 Similar to Desaturase/cytochrome b5 protein 68 2e-12
Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) 66 6e-12
Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.... 66 7e-12
Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7... 66 7e-12
>Os10g0518200 Similar to Cytochome b5 (Fragment)
Length = 134
Score = 277 bits (708), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MAGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFE 60
MAGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFE
Sbjct: 1 MAGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFE 60
Query: 61 DIGHSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILI 120
DIGHSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILI
Sbjct: 61 DIGHSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILI 120
Query: 121 LGLAFAIRQYTKSE 134
LGLAFAIRQYTKSE
Sbjct: 121 LGLAFAIRQYTKSE 134
>Os05g0108800 Cytochrome b5
Length = 137
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 103/131 (78%)
Query: 4 EKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDIG 63
KKV+ EEVA HN DCWLII GKVY+V+ F+++HPGGD+VLL+ TGKDAT+DFED+G
Sbjct: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
Query: 64 HSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILILGL 123
HS +AR MM++Y +G+ID STIP + +V P+Q N DK + +IKILQFLVP+ ILGL
Sbjct: 65 HSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGL 124
Query: 124 AFAIRQYTKSE 134
A AIR YTKSE
Sbjct: 125 AVAIRIYTKSE 135
>Os01g0971500 Similar to Cytochrome b5
Length = 135
Score = 172 bits (437), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 100/132 (75%)
Query: 3 GEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDI 62
KV EEV+ HN DCWLII GKVY+VT F+++HPGGD+VLL+ T KDAT+DFED+
Sbjct: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDV 61
Query: 63 GHSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILILG 122
GHS +AR MM++Y +G+IDA+TIP K + P+Q N DK + +IKILQFLVP+ ILG
Sbjct: 62 GHSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFIIKILQFLVPLAILG 121
Query: 123 LAFAIRQYTKSE 134
LA A+R YTKSE
Sbjct: 122 LAVAVRIYTKSE 133
>Os02g0649800 Similar to Cytochrome B5 homolog (Fragment)
Length = 138
Score = 163 bits (413), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
Query: 1 MAGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFE 60
MAG K V+ F+EV+ HN KDCWLIIAGKVYDV+ FM+EHPGGDEVLLA TGKDAT DF
Sbjct: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
Query: 61 DIGHSESAREMMEKYLIGEIDASTIPVKRTH-VTPQQAPGNPDKGDD-MLIKILQFLVPI 118
DIGH+ +A+E+M +Y IGE+DAST+P K + V + A PD + LQ VP+
Sbjct: 61 DIGHTATAKELMPQYCIGEVDASTVPAKPAYRVVSEDASAKPDAASQGAWLTALQLAVPV 120
Query: 119 LILGLAFAIRQYTKSE 134
++LGLA+A++ + K++
Sbjct: 121 VLLGLAYALQDFAKTK 136
>D10954
Length = 65
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/62 (93%), Positives = 59/62 (95%)
Query: 1 MAGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFE 60
MAGEKKVFGFEEVAGHNV +DCWLIIAGKVYD TSFMDEHPGGDEVLLAVTGKDATNDF
Sbjct: 1 MAGEKKVFGFEEVAGHNVXRDCWLIIAGKVYDXTSFMDEHPGGDEVLLAVTGKDATNDFX 60
Query: 61 DI 62
DI
Sbjct: 61 DI 62
>Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fragment)
Length = 150
Score = 112 bits (281), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 78/137 (56%), Gaps = 8/137 (5%)
Query: 2 AGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLL-AVTGKDATNDFE 60
A KK+F +V GH KDCW++I GKVYDVT F+++HPGG++VLL A DAT FE
Sbjct: 7 ASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFE 66
Query: 61 DIGHSESAREMMEKYLIGEIDASTIP--VKRTHVTPQQAPGN-----PDKGDDMLIKILQ 113
D+GHS SA MM YLIG I P + T + P N KG L
Sbjct: 67 DVGHSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGPPAPNTFLD 126
Query: 114 FLVPILILGLAFAIRQY 130
FL+P+ +LGLAFA Y
Sbjct: 127 FLLPLFVLGLAFAAWYY 143
>Os08g0386300 Cytochrome b5 domain containing protein
Length = 119
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 11 EEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDIGHSESARE 70
EE++ HN DCW+II KVYDVTS+++EHPGGD +L G D+T F H E
Sbjct: 48 EEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGD-AILNNAGGDSTEGFFGPQHGFRVFE 106
Query: 71 MMEKYLIGEIDAS 83
++E + IGE+ S
Sbjct: 107 IIEDFCIGELKHS 119
>Os09g0338500 Similar to Desaturase/cytochrome b5 protein
Length = 466
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 11 EEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDIGHSESARE 70
EE+ H D W+ I+G VYDVT+++ HPGGD LL + G+DAT+ F H SAR
Sbjct: 31 EELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFAAY-HPPSARP 89
Query: 71 MMEKYLIGEIDASTI 85
++ ++L+G ++ T+
Sbjct: 90 LLGRFLVGRLEDYTV 104
>Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 6 KVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDIGHS 65
K F EV H+ W+++ G VYD T+F+ +HPGG + +L G D T +F+ I HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 66 ESAREMMEKYLIGEI 80
+ A+ +++ Y IGE+
Sbjct: 601 DKAKALLDTYRIGEL 615
>Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 6 KVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDIGHS 65
K F EV H+ W+++ G VYD T+F+ +HPGG + +L G D T +F+ I HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 66 ESAREMMEKYLIGEI 80
+ A+ +++ Y IGE+
Sbjct: 601 DKAKALLDTYRIGEL 615
>Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2)
Length = 889
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 FGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDIGHSES 67
+ EV H + W+I+ G VYD T F+ +HPGG + ++ G D T +F+ I HS+
Sbjct: 516 YTMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAI-HSDK 574
Query: 68 AREMMEKYLIGEI 80
AR ++E Y IGE+
Sbjct: 575 ARGLLEMYRIGEL 587
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.138 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,695,882
Number of extensions: 188533
Number of successful extensions: 370
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 11
Length of query: 134
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 44
Effective length of database: 12,336,541
Effective search space: 542807804
Effective search space used: 542807804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)