BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0546500 Os09g0546500|Os09g0546500
(144 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0546500 Similar to Auxin induced protein 300 3e-82
Os09g0547100 Similar to Auxin induced protein 230 3e-61
Os09g0546800 Similar to Auxin induced protein 212 7e-56
Os09g0546100 Auxin responsive SAUR protein family protein 206 5e-54
Os09g0546900 Similar to Auxin induced protein 196 5e-51
Os09g0546000 Similar to Auxin induced protein 194 2e-50
Os09g0546233 191 1e-49
Os09g0546300 Similar to Auxin induced protein 182 5e-47
Os09g0545500 171 2e-43
Os09g0545280 Similar to Auxin induced protein 168 2e-42
Os09g0547000 Similar to Auxin induced protein 161 2e-40
Os08g0550700 Similar to Auxin induced protein 160 3e-40
Os09g0546700 158 2e-39
Os09g0545700 Similar to Auxin induced protein 152 6e-38
Os09g0545900 139 7e-34
Os09g0546266 139 1e-33
Os03g0290100 131 1e-31
Os03g0368100 121 1e-28
>Os09g0546500 Similar to Auxin induced protein
Length = 144
Score = 300 bits (767), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL
Sbjct: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA
Sbjct: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
Query: 121 ISCHYANSTTPSLGVNMQVAICSS 144
ISCHYANSTTPSLGVNMQVAICSS
Sbjct: 121 ISCHYANSTTPSLGVNMQVAICSS 144
>Os09g0547100 Similar to Auxin induced protein
Length = 150
Score = 230 bits (587), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/148 (75%), Positives = 124/148 (83%), Gaps = 4/148 (2%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTM----MAPQEAEGCSTMVAGKGYCIVYTADGMRF 56
MIS KRIAQLAKKWRRMAA GRKRLTM MA +EA+GCST VAGKG+C +YTADG RF
Sbjct: 3 MISAKRIAQLAKKWRRMAALGRKRLTMSSTAMATEEAQGCSTAVAGKGHCAIYTADGARF 62
Query: 57 EVPLRYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFL 116
EVPL YLGT V GELL MS+EE+GF+ DGKITLPCDAMVMEYV+CLL RNAS +VEKAFL
Sbjct: 63 EVPLAYLGTAVLGELLTMSREEYGFSGDGKITLPCDAMVMEYVLCLLGRNASAEVEKAFL 122
Query: 117 SSMAISCHYANSTTPSLGVNMQVAICSS 144
SSM + CHYA+ TPSLG QVA+CS+
Sbjct: 123 SSMVMPCHYASCVTPSLGACQQVAVCSN 150
>Os09g0546800 Similar to Auxin induced protein
Length = 141
Score = 212 bits (540), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/140 (72%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MIS +R+AQLAKKW+RMAA GRKRLT+ A Q+ E CS+M AGKG+C +YTADG RFEVPL
Sbjct: 1 MISARRVAQLAKKWQRMAALGRKRLTVRAKQDQECCSSM-AGKGHCAMYTADGSRFEVPL 59
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
YLGT VF ELLRMSQEEFGF+ DG+I LPCDA VMEY MCLLRRNASV+VEKA LSSM
Sbjct: 60 AYLGTAVFSELLRMSQEEFGFSIDGRIMLPCDAAVMEYAMCLLRRNASVEVEKALLSSMV 119
Query: 121 ISCHYANSTTPSLGVNMQVA 140
SCHY S P++GVN Q++
Sbjct: 120 ASCHYTGSMVPTVGVNQQIS 139
>Os09g0546100 Auxin responsive SAUR protein family protein
Length = 141
Score = 206 bits (524), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MIS +R+AQLAKKW+RMAA RKRLTM A +E E C T VAGKG+C++YTADG RFEVPL
Sbjct: 1 MISARRLAQLAKKWQRMAALERKRLTMKA-KENEECCTSVAGKGHCVMYTADGSRFEVPL 59
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
YLGT VF ELLRMSQEEFGFTSDG+I LPCDA+VMEY MCLL+RNAS +VEKA LSSM
Sbjct: 60 AYLGTAVFSELLRMSQEEFGFTSDGRIMLPCDAVVMEYAMCLLKRNASAEVEKALLSSMV 119
Query: 121 ISCHYANSTTPSLGVNMQVA 140
CHY P++GVN ++
Sbjct: 120 APCHYTGCMVPTVGVNQHIS 139
>Os09g0546900 Similar to Auxin induced protein
Length = 144
Score = 196 bits (498), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 111/143 (77%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MIS KR+AQ+AKKW+R+AA GRKR+T P+ + C + VA KG+CI+YTADG RFEVPL
Sbjct: 1 MISAKRLAQMAKKWQRIAALGRKRITWTTPKATDECCSSVAVKGHCIMYTADGRRFEVPL 60
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
+L T +F ELLRMSQEEFGFT+DG ITLPCDA VMEYV+CLLRRNAS +V +AFLS++
Sbjct: 61 AFLATTIFAELLRMSQEEFGFTTDGGITLPCDAEVMEYVLCLLRRNASEEVVRAFLSTIV 120
Query: 121 ISCHYANSTTPSLGVNMQVAICS 143
SCHY N SLG QVA S
Sbjct: 121 KSCHYGNGFAQSLGSVQQVAASS 143
>Os09g0546000 Similar to Auxin induced protein
Length = 144
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 110/143 (76%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MIS KR+AQ+ KKW+RMAA GRKRLT AP+ + C + VA KG+CI+YTADG RFEVPL
Sbjct: 1 MISAKRLAQMVKKWQRMAAFGRKRLTWTAPKATDKCCSSVAVKGHCIMYTADGRRFEVPL 60
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
+L T +F ELLR+SQEEFGFTSDG ITLPCDA VMEYVMCLL+RNAS +V +AFLS++
Sbjct: 61 AFLATTIFAELLRISQEEFGFTSDGGITLPCDAEVMEYVMCLLKRNASEEVVRAFLSTIV 120
Query: 121 ISCHYANSTTPSLGVNMQVAICS 143
CHY + SLG QVA S
Sbjct: 121 KPCHYGSGFAQSLGFVQQVAASS 143
>Os09g0546233
Length = 140
Score = 191 bits (486), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/140 (67%), Positives = 109/140 (77%), Gaps = 2/140 (1%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MIS KR+ QLAK W+RMAA GRKR+ M QE E CST VA KG+C++YTADG RFEVPL
Sbjct: 1 MISAKRLVQLAK-WQRMAALGRKRI-MGKAQETEECSTSVAVKGHCVMYTADGRRFEVPL 58
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
YLGT+VF ELLRMSQEEFGFTSDG+I LPCDA MEY MCLL+RN SV+V A LSSM
Sbjct: 59 AYLGTVVFSELLRMSQEEFGFTSDGRIVLPCDAAEMEYAMCLLKRNPSVEVVDALLSSML 118
Query: 121 ISCHYANSTTPSLGVNMQVA 140
I CH S P++GVN Q++
Sbjct: 119 IRCHCTGSMVPTVGVNQQIS 138
>Os09g0546300 Similar to Auxin induced protein
Length = 157
Score = 182 bits (463), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MIS KR+ QLAKKW+RMAA GRKR+ M A QE E CST VA KG+C++YTADG RFEVPL
Sbjct: 1 MISAKRLVQLAKKWQRMAALGRKRV-MAAAQETEECSTSVAVKGHCVMYTADGRRFEVPL 59
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMA 120
YLG VF ELLRMSQEEFGFTSDG+I LPCDA MEY MCLL+RNAS DV A LSSM
Sbjct: 60 VYLGMRVFIELLRMSQEEFGFTSDGRIMLPCDAAEMEYAMCLLKRNASADVVNALLSSML 119
Query: 121 ISCHYANSTTPSLGVNMQVAIC 142
SC Y + + + + +C
Sbjct: 120 TSCRYTATEVMHVEALILIPLC 141
>Os09g0545500
Length = 138
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 106/146 (72%), Gaps = 10/146 (6%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTM--VAGKGYCIVYTADGMRFEV 58
MI +KR+AQLA++ +R+ A +E + C T VA KG C +YTADG RF+V
Sbjct: 1 MIHSKRLAQLARRL--------QRVKTTAAREDDACCTTSPVADKGRCTMYTADGRRFKV 52
Query: 59 PLRYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSS 118
PL YLGT VFGELLRMSQEEFGF DG+ITLPCDA VMEYVMCLLRRNAS DVE+AFLSS
Sbjct: 53 PLPYLGTTVFGELLRMSQEEFGFAGDGRITLPCDAAVMEYVMCLLRRNASEDVERAFLSS 112
Query: 119 MAISCHYANSTTPSLGVNMQVAICSS 144
+ +SC ++ P + ++ Q ++CSS
Sbjct: 113 VVMSCQDSSCGVPPVALHQQFSVCSS 138
>Os09g0545280 Similar to Auxin induced protein
Length = 171
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 110/145 (75%), Gaps = 5/145 (3%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEG---CSTMVAGKGYCIVYTADGMRFE 57
MI+ KR+ LAKKW+ MAA GR+RLT+ + EG CS+ +A KG+CI+YTADG RF
Sbjct: 27 MINPKRLVHLAKKWQHMAALGRRRLTITGATK-EGNLRCSSAIADKGHCIIYTADGERFG 85
Query: 58 VPLRYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLS 117
VPL YL T VFGELLR+S++EFGFT + KITLPC+A VMEYVMCLLRR S +VE+A +S
Sbjct: 86 VPLTYLSTTVFGELLRLSEDEFGFTGEEKITLPCEAAVMEYVMCLLRRKPSEEVEQAVVS 145
Query: 118 SMAISCHYANSTT-PSLGVNMQVAI 141
S+ + C+Y +ST+ S+ ++ +AI
Sbjct: 146 SVVMPCNYKSSTSMVSVNLSQSLAI 170
>Os09g0547000 Similar to Auxin induced protein
Length = 141
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 12/148 (8%)
Query: 1 MISTKRIAQLAKKWRRM-AAKGRKRLTMMAPQEAEGC----STMVAGKGYCIVYTADGMR 55
MIS++++AQL KKW+RM A+ GR+ ++ +GC + VA KG+C++YT DG R
Sbjct: 1 MISSRKLAQLGKKWQRMVASSGRQTASI------DGCCSTATAYVADKGHCVLYTTDGAR 54
Query: 56 FEVPLRYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAF 115
FEVPL YL T +F ELLR+SQEEFGF S+ KITLPCDA VMEYVMCL+RR+AS ++EKA
Sbjct: 55 FEVPLMYLNTAIFCELLRVSQEEFGFASNNKITLPCDASVMEYVMCLIRRDASEEIEKAL 114
Query: 116 LSSMAISCHYANSTTPSLGVNMQVAICS 143
LSS+ C S P + +N Q A+CS
Sbjct: 115 LSSIVRPC-LNTSVVPPMRLNQQFAVCS 141
>Os08g0550700 Similar to Auxin induced protein
Length = 143
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 105/146 (71%), Gaps = 7/146 (4%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQ--EAEGCSTMVAGKGYCIVYTADGMRFEV 58
MIS+K++ QL+KKW+ M A GRKR+T + CS+ VAGKG C+VY+ DG RFE+
Sbjct: 1 MISSKKLVQLSKKWQGMGAIGRKRVTASEKEIIHHSSCSSSVAGKGNCVVYSCDGRRFEI 60
Query: 59 PLRYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSS 118
PL YL T VF ELLRMSQEEFGF+SDG+ITLPCDA VMEYVMCLL R AS +VEKA LSS
Sbjct: 61 PLAYLRTPVFVELLRMSQEEFGFSSDGRITLPCDAAVMEYVMCLLGREASEEVEKALLSS 120
Query: 119 MAISCHYANSTTPS-LGVNMQVAICS 143
+ + C S PS + + A+CS
Sbjct: 121 IVMPC----SHHPSRMAQHQHFAVCS 142
>Os09g0546700
Length = 144
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 103/149 (69%), Gaps = 11/149 (7%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTM----VAGKGYCIVYTADGMRF 56
MI +K++AQLA+K +R+ R + GC++ VA KG+C VYT+DG RF
Sbjct: 1 MIHSKKLAQLARKLQRIKTAASNR-----EDDDAGCTSTSPSPVADKGHCAVYTSDGARF 55
Query: 57 EVPLRYLGTMVFGELLRMSQEEFGFT-SDGKITLPCDAMVMEYVMCLLRRNASVDVEKAF 115
EVPL YLGT VF ELLRMSQEEFGF DG+ITLPCDA MEYVMCLLRRNAS +VE+AF
Sbjct: 56 EVPLPYLGTTVFVELLRMSQEEFGFAGGDGRITLPCDAAAMEYVMCLLRRNASEEVERAF 115
Query: 116 LSS-MAISCHYANSTTPSLGVNMQVAICS 143
LSS + + C + T P + ++ Q A+CS
Sbjct: 116 LSSVVTMPCQNSGCTMPPVALHHQFAVCS 144
>Os09g0545700 Similar to Auxin induced protein
Length = 141
Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 106/148 (71%), Gaps = 12/148 (8%)
Query: 1 MISTKRIAQLAKKWR-RMAAKG--RKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFE 57
MIS K++AQLAKK + RMA+ G R++ + A S +AGKG+C VYTADG RFE
Sbjct: 1 MISAKKLAQLAKKLQMRMASAGGSRQKAVVAADDCCSTASLSLAGKGHCAVYTADGARFE 60
Query: 58 VPLRYLGTMVFGELLRMSQEEFGFT-SDGKITLPCDAMVMEYVMCLLRRNASVDVEKAFL 116
VPL YLGT +FGELL MS+EEFGF DG+ITLPCDA VMEYVMCLL R+AS +VE+AFL
Sbjct: 61 VPLPYLGTPLFGELLTMSREEFGFAGDDGRITLPCDASVMEYVMCLLSRDASEEVERAFL 120
Query: 117 SSMAISCHYANSTTPSLGV-NMQVAICS 143
SSMA C ++GV + Q A+C+
Sbjct: 121 SSMARPCR-------NIGVISHQFAVCT 141
>Os09g0545900
Length = 285
Score = 139 bits (350), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 88/116 (75%), Gaps = 11/116 (9%)
Query: 1 MISTKRIAQLAKKWRRM-AAKGRKRLTMMAPQEAEGC----STMVAGKGYCIVYTADGMR 55
MIS++++AQLAKKW+ M A+ GR+ + +GC + VA KG+C++YT DG R
Sbjct: 176 MISSRKLAQLAKKWQMMVASSGRQTANI------DGCCSTATVYVADKGHCVLYTTDGAR 229
Query: 56 FEVPLRYLGTMVFGELLRMSQEEFGFTSDGKITLPCDAMVMEYVMCLLRRNASVDV 111
FEVPL YL T+VF ELLRMSQEEFGFTSD KITLP DA VMEYVMCL+RR+AS +V
Sbjct: 230 FEVPLMYLNTVVFCELLRMSQEEFGFTSDYKITLPYDAAVMEYVMCLIRRDASEEV 285
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 72/103 (69%), Gaps = 7/103 (6%)
Query: 1 MISTKRIAQLAKKWRRM---AAKGRKRLTMMAPQEAEGCSTM-VAGKGYCIVYTADGMRF 56
MI K++AQLA+K ++ A+ G R T A + CST +AGKG+C VYTADG RF
Sbjct: 1 MIHAKKLAQLARKLQQKMVSASAGSGRHT--AGTSHDCCSTASLAGKGHCAVYTADGARF 58
Query: 57 EVPLRYLGTMVFGELLRMSQEEFGFTS-DGKITLPCDAMVMEY 98
EVPL YLGT VFGELL MS EEFGF S DG+ITL CD VME+
Sbjct: 59 EVPLPYLGTAVFGELLTMSHEEFGFASEDGRITLTCDTSVMEW 101
>Os09g0546266
Length = 110
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
Query: 1 MISTKRIAQLAKKWRRMAAKGRKRLTMMAPQEAEGCSTMVAGKGYCIVYTADGMRFEVPL 60
MIS KR+ QLAKKW+R+AA GRKR+ M QE E CST VA KG+C++YTADG RFEVPL
Sbjct: 1 MISAKRLVQLAKKWQRIAALGRKRI-MAKAQETEECSTSVAVKGHCVMYTADGRRFEVPL 59
Query: 61 RYLGTMVFGELLRMSQEEFGFTSDGKITLPCDA 93
YLGT VF ELLRMSQEEFGFTSDG+I LP DA
Sbjct: 60 TYLGTAVFSELLRMSQEEFGFTSDGRIVLPFDA 92
>Os03g0290100
Length = 207
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 82/116 (70%), Gaps = 4/116 (3%)
Query: 19 AKGRKRLTMMAPQEAEGCSTM---VAGKGYCIVYTADGMRFEVPLRYLGTMVFGELLRMS 75
A + R T A + CST +AGKG+ VYTADG RFEVPL YLG MVFGELL MS
Sbjct: 8 ASQQVRWTGTAGTTGDCCSTASSSLAGKGHSAVYTADGARFEVPLVYLGMMVFGELLAMS 67
Query: 76 QEEFGFTS-DGKITLPCDAMVMEYVMCLLRRNASVDVEKAFLSSMAISCHYANSTT 130
QEEFGF S DG+ITL CDA+VMEYVMCL+ +AS +VE+ FLS MA SCH T+
Sbjct: 68 QEEFGFASDDGRITLTCDALVMEYVMCLISIDASEEVERVFLSFMASSCHCVGGTS 123
>Os03g0368100
Length = 215
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 37 STMVAGKGYCIVYTADGMRFEVPLRYLGTMVFGELLRMSQEEFGFT-SDGKITLPCDAMV 95
S+ +AGKG+ YTADG RFEVPL YLGTMV GELL MSQEEFGF DG+I L CDA V
Sbjct: 29 SSSLAGKGHSAEYTADGARFEVPLVYLGTMVLGELLVMSQEEFGFAGDDGRIMLTCDASV 88
Query: 96 MEYVMCLLRRNASVDVEKAFLSSMAISCH 124
ME VMCL+ R+AS +VE+ FLS MA SCH
Sbjct: 89 MEQVMCLISRDASEEVERMFLSCMASSCH 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,419,782
Number of extensions: 156083
Number of successful extensions: 505
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 19
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)