Os09g0546900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0546900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin induced protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.27	(0.0628)	R²	:	0.845
β₁	:	-4.09	(0.23)	R²_dD	:	0.112	R²_D	:	0.0864
β₂	:	7.24	(0.164)	R²_dC	:	0.667	R²_C	:	0.599
β₃	:	-2.49	(0.153)	R²_dE	:	0.0916	R²_E	:	0.0699
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-1.39	(0.134)	R²_dN8	:	0.0483	R²_N8	:	0.0104
σ	:	1.17
deviance	:	634.18
__

_____

C
peak time of C	:	6.07
E
wheather	:	temperature
threshold	:	19.97
memory length	:	81
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	21.4
open length of G	:	5.65

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
625.98	1.18	6.27	-4.08	7.24	-2.49	-1.88	-0.0838	-1.39	6.07	20	85	21.2	5.8
625.88	1.17	6.27	-4.1	7.24	-2.48	-2.02	--	-1.4	6.08	20.04	82	21.3	5.77
634.27	1.17	6.27	-4.09	7.24	-2.49	--	-0.141	-1.39	6.07	19.94	84	21.3	5.72
634.18	1.17	6.27	-4.09	7.24	-2.49	--	--	-1.39	6.07	19.97	81	21.4	5.65
3140.69	2.62	6.36	-3.89	--	-2.41	--	0.0208	-1.05	--	19.41	25	20.6	6.51
844.04	1.36	6.28	-4.25	7.21	--	-1.39	--	-1.53	6.9	--	--	--	--
848.98	1.36	6.28	-4.28	7.2	--	--	--	-1.53	6.91	--	--	--	--
814.64	1.33	6.43	-4.63	--	-6.33	--	--	-1.1	--	19.3	325	9.85	13.3
1064.51	1.52	6.24	--	7.65	-3.02	--	--	-1.27	5.82	19.5	167	20.8	5.98
3568.85	2.79	6.43	-4.13	--	--	--	--	-1.4	--	--	--	--	--
1331.23	1.71	6.17	--	7.15	--	--	--	-1.05	6.95	--	--	--	--
1009.76	1.48	6.35	--	--	-6.22	--	--	-0.873	--	19.3	297	9.72	14
4017.83	2.96	6.33	--	--	--	--	--	-0.937	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	629.20	temperature	20.0	90	> th	dose independent	rect.	21	6
5	652.09	temperature	20.0	270	> th	dose independent	rect.	22	2
8	652.49	temperature	15.0	90	> th	dose dependent	rect.	21	6
20	662.82	temperature	20.0	90	> th	dose independent	rect.	11	16
31	671.68	temperature	15.0	270	> th	dose dependent	rect.	22	2
51	679.31	temperature	20.0	270	> th	dose independent	rect.	9	16
57	681.07	temperature	20.0	10	> th	dose independent	rect.	12	15
97	697.62	wind	3.0	30	< th	dose dependent	rect.	22	5
99	697.97	radiation	40.0	90	< th	dose independent	rect.	3	8
121	702.39	precipitation	0.1	10	< th	dose independent	rect.	3	9
122	702.39	precipitation	0.1	10	< th	dose dependent	rect.	3	9
123	702.86	precipitation	0.1	90	< th	dose independent	rect.	3	8
124	702.86	precipitation	0.1	90	< th	dose dependent	rect.	3	8
134	705.04	temperature	20.0	90	> th	dose independent	rect.	22	17
140	706.90	humidity	60.0	90	> th	dose independent	rect.	3	8
152	708.65	humidity	50.0	90	> th	dose dependent	rect.	3	9
160	709.05	wind	3.0	10	< th	dose independent	rect.	22	5
166	709.51	temperature	10.0	90	> th	dose independent	rect.	3	8
167	709.51	atmosphere	995.0	90	> th	dose independent	rect.	3	8
168	709.51	atmosphere	1015.0	90	< th	dose independent	rect.	3	8
170	709.58	wind	9.0	90	< th	dose dependent	rect.	3	8
172	709.72	temperature	30.0	90	< th	dose independent	rect.	3	8
179	710.53	temperature	20.0	90	> th	dose independent	rect.	6	21
188	711.42	humidity	70.0	90	> th	dose dependent	rect.	23	4
190	711.45	wind	9.0	90	< th	dose independent	rect.	11	16
194	711.82	humidity	80.0	90	> th	dose independent	rect.	23	4
195	711.84	wind	9.0	90	< th	dose independent	rect.	3	8
199	712.16	precipitation	0.1	10	< th	dose independent	rect.	12	15
200	712.16	precipitation	0.1	10	< th	dose dependent	rect.	12	15
210	713.08	temperature	10.0	10	> th	dose independent	rect.	3	9
212	713.08	atmosphere	995.0	10	> th	dose independent	rect.	3	9
213	713.08	atmosphere	1015.0	10	< th	dose independent	rect.	3	9
238	715.69	temperature	10.0	90	> th	dose dependent	rect.	11	16
263	717.84	wind	9.0	10	< th	dose independent	rect.	3	9
293	719.01	atmosphere	1010.0	90	< th	dose independent	rect.	21	6
315	720.04	precipitation	0.1	90	< th	dose independent	rect.	3	18
316	720.04	precipitation	0.1	90	< th	dose dependent	rect.	3	18
331	720.89	humidity	80.0	270	> th	dose independent	rect.	23	1
332	721.05	wind	9.0	10	< th	dose independent	rect.	12	15
339	721.42	precipitation	0.1	270	< th	dose independent	rect.	1	8
340	721.42	precipitation	0.1	270	< th	dose dependent	rect.	1	8
343	721.62	temperature	20.0	10	> th	dose independent	rect.	23	16
346	722.01	precipitation	0.1	90	< th	dose independent	rect.	21	6
348	722.01	precipitation	0.1	90	< th	dose dependent	rect.	21	6
350	722.19	radiation	1.0	90	< th	dose dependent	rect.	21	6
352	722.20	temperature	30.0	90	< th	dose independent	rect.	21	6
353	722.20	humidity	50.0	90	> th	dose independent	rect.	21	6
356	722.20	atmosphere	995.0	90	> th	dose independent	rect.	21	6
357	722.20	radiation	1.0	90	< th	dose independent	rect.	21	6
362	722.20	temperature	10.0	90	> th	dose independent	rect.	3	18
363	722.20	atmosphere	1015.0	90	< th	dose independent	rect.	3	18
374	722.39	humidity	90.0	10	> th	dose dependent	rect.	2	1
377	722.42	precipitation	0.1	10	< th	dose independent	rect.	3	19
378	722.42	precipitation	0.1	10	< th	dose dependent	rect.	3	19
384	722.68	wind	9.0	90	< th	dose independent	rect.	21	6
393	723.12	temperature	10.0	270	> th	dose dependent	rect.	19	19
403	723.65	wind	9.0	90	< th	dose independent	rect.	3	18
412	724.52	wind	9.0	10	< th	dose dependent	rect.	3	9
413	724.59	radiation	30.0	270	< th	dose independent	rect.	1	8
421	724.80	atmosphere	1010.0	90	< th	dose independent	rect.	12	15
427	725.10	radiation	40.0	90	< th	dose independent	rect.	12	15
430	725.13	humidity	70.0	270	> th	dose independent	rect.	1	9
433	725.19	atmosphere	995.0	10	> th	dose independent	rect.	12	15
436	725.26	radiation	40.0	270	< th	dose independent	rect.	24	10
446	725.57	radiation	40.0	90	< th	dose independent	rect.	3	18
447	725.60	atmosphere	1015.0	10	< th	dose independent	rect.	12	15
455	725.89	temperature	20.0	10	> th	dose independent	rect.	6	21
477	727.04	radiation	40.0	90	< th	dose dependent	rect.	3	18
507	728.26	atmosphere	995.0	90	> th	dose independent	rect.	3	18
512	728.45	humidity	50.0	90	> th	dose dependent	rect.	3	18
519	728.89	wind	9.0	90	< th	dose dependent	rect.	11	16
584	730.54	radiation	40.0	270	< th	dose dependent	rect.	1	9
587	730.58	temperature	30.0	270	< th	dose independent	rect.	1	8
652	731.56	wind	7.0	270	< th	dose independent	rect.	1	8
677	731.75	wind	7.0	270	< th	dose independent	rect.	14	6
697	732.45	temperature	10.0	270	> th	dose independent	rect.	1	8
699	732.45	humidity	50.0	270	> th	dose independent	rect.	1	8
700	732.45	atmosphere	995.0	270	> th	dose independent	rect.	1	8
701	732.45	atmosphere	1015.0	270	< th	dose independent	rect.	1	8
704	732.55	radiation	40.0	90	< th	dose dependent	rect.	3	8
760	733.79	wind	9.0	30	< th	dose dependent	rect.	3	19
770	734.21	wind	9.0	270	< th	dose independent	rect.	9	16
777	734.34	humidity	60.0	10	> th	dose independent	rect.	3	18
850	735.25	wind	3.0	270	< th	dose independent	rect.	23	1
859	735.49	radiation	30.0	90	< th	dose independent	rect.	15	6
866	735.82	humidity	50.0	30	> th	dose independent	rect.	13	14
877	736.09	temperature	15.0	270	> th	dose independent	rect.	14	6
878	736.09	wind	9.0	270	< th	dose dependent	rect.	14	6
903	736.47	atmosphere	1015.0	270	< th	dose independent	rect.	14	6
905	736.47	atmosphere	995.0	270	> th	dose independent	rect.	20	18
909	736.58	precipitation	0.1	270	< th	dose independent	rect.	9	16
911	736.58	precipitation	0.1	270	< th	dose dependent	rect.	9	16
913	736.61	wind	9.0	270	< th	dose independent	rect.	20	18
944	736.97	atmosphere	1010.0	270	< th	dose independent	rect.	22	2
950	737.00	humidity	70.0	270	> th	dose dependent	rect.	23	1
983	737.29	temperature	10.0	10	> th	dose dependent	rect.	12	15