FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0546800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin induced protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0236) R2 : 0.00313
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0594 (0.0496) R2dN8 : 0.00404 R2N8 : 0.00313
σ : 0.444
deviance : 90.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.66 0.435 3.05 -0.193 0.28 -0.194 0.613 -0.534 -0.0869 9.8 17.48 10 -- --
86.41 0.433 3.05 -0.208 0.267 -0.179 0.171 -- -0.079 9.54 17.14 9 -- --
86.32 0.433 3.05 -0.19 0.277 -0.178 -- -0.179 -0.0834 9.28 17.18 9 -- --
86.48 0.433 3.05 -0.199 0.262 -0.172 -- -- -0.0893 9.25 17.13 9 -- --
88.95 0.442 3.06 -0.195 -- -0.0115 -- -0.273 -0.0823 -- 17.18 9 -- --
87.5 0.439 3.05 -0.213 0.187 -- 0.153 -- -0.0854 6.97 -- -- -- --
87.56 0.438 3.05 -0.211 0.188 -- -- -- -0.0858 6.91 -- -- -- --
89.06 0.44 3.05 -0.199 -- -0.0678 -- -- -0.0789 -- 21.93 11 -- --
87.52 0.436 3.04 -- 0.269 -0.184 -- -- -0.0664 9.4 17.18 10 -- --
89.4 0.442 3.05 -0.207 -- -- -- -- -0.0823 -- -- -- -- --
88.73 0.441 3.05 -- 0.185 -- -- -- -0.0624 6.98 -- -- -- --
90.13 0.442 3.05 -- -- -0.0811 -- -- -0.0593 -- 24.23 15 -- --
90.53 0.444 3.05 -- -- -- -- -- -0.0594 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.67 temperature 25.0 90 < th dose dependent rect. 8 1
14 80.04 temperature 20.0 90 < th dose independent rect. 8 1
16 81.00 humidity 80.0 270 < th dose dependent rect. 6 1
18 81.34 humidity 80.0 270 < th dose independent rect. 6 1
19 81.57 radiation 20.0 10 < th dose independent rect. 9 2
30 82.36 humidity 70.0 10 > th dose independent rect. 9 1
36 82.48 radiation 30.0 10 < th dose dependent rect. 9 1
50 82.69 humidity 80.0 1440 > th dose independent rect. 4 1
51 82.75 wind 3.0 90 > th dose independent rect. 8 1
60 82.84 temperature 25.0 10 < th dose independent rect. 9 1
97 83.23 temperature 20.0 270 < th dose independent rect. 6 10
108 83.31 temperature 20.0 270 < th dose independent rect. 6 4
120 83.40 atmosphere 1010.0 10 < th dose dependent rect. 5 1
125 83.44 humidity 80.0 720 > th dose independent rect. 1 6
147 83.57 wind 3.0 270 > th dose dependent rect. 5 2
166 83.77 temperature 20.0 10 > th dose dependent rect. 5 1
177 83.88 humidity 80.0 720 > th dose independent rect. 23 8
182 83.92 wind 1.0 10 < th dose dependent rect. 5 3
187 83.95 wind 1.0 10 < th dose dependent rect. 5 1
194 83.99 radiation 20.0 10 < th dose independent rect. 8 22
195 84.00 temperature 20.0 10 > th dose independent rect. 5 1
210 84.06 wind 1.0 10 < th dose dependent rect. 5 8
260 84.22 wind 1.0 90 > th dose dependent rect. 8 1
270 84.28 radiation 20.0 10 < th dose independent rect. 5 6
274 84.30 wind 1.0 10 < th dose independent rect. 5 3
302 84.39 humidity 50.0 1440 > th dose dependent rect. 4 1
316 84.42 atmosphere 1000.0 10 < th dose independent rect. 4 2
318 84.42 atmosphere 1010.0 10 < th dose independent rect. 5 5
319 84.42 humidity 70.0 10 > th dose independent rect. 5 6
331 84.44 atmosphere 1000.0 90 < th dose independent rect. 4 1
366 84.49 wind 1.0 10 < th dose independent rect. 5 1
372 84.50 wind 3.0 270 > th dose independent rect. 5 2
375 84.50 humidity 80.0 10 > th dose dependent rect. 10 1
413 84.60 humidity 70.0 10 > th dose independent rect. 21 14
416 84.61 temperature 20.0 10 > th dose independent rect. 5 14
425 84.63 radiation 30.0 30 < th dose independent rect. 21 13
432 84.66 wind 1.0 30 > th dose independent rect. 10 22
433 84.66 humidity 70.0 90 > th dose dependent rect. 8 1
443 84.68 atmosphere 1000.0 30 > th dose independent rect. 8 2
445 84.68 wind 1.0 10 < th dose independent rect. 5 8
465 84.72 radiation 20.0 10 < th dose independent rect. 8 15
484 84.76 atmosphere 1010.0 30 < th dose independent rect. 8 2
500 84.79 humidity 90.0 10 < th dose independent rect. 10 22
505 84.79 humidity 80.0 1440 < th dose dependent rect. 20 11
509 84.80 temperature 25.0 90 < th dose dependent rect. 8 10
512 84.81 humidity 70.0 10 > th dose independent rect. 16 19
527 84.84 radiation 30.0 270 > th dose dependent rect. 7 1
558 84.87 temperature 20.0 10 > th dose independent rect. 5 5
566 84.88 radiation 20.0 10 < th dose independent rect. 8 11
579 84.91 humidity 80.0 10 > th dose independent rect. 5 1
582 84.91 radiation 20.0 10 < th dose independent rect. 5 22
595 84.93 wind 1.0 270 < th dose independent rect. 8 2
620 84.96 humidity 80.0 1440 > th dose independent rect. 24 1
623 84.96 radiation 20.0 10 < th dose independent rect. 8 19
624 84.96 radiation 20.0 10 < th dose independent rect. 16 19
633 84.97 atmosphere 1015.0 10 < th dose independent rect. 6 23
639 84.98 wind 1.0 270 < th dose dependent rect. 7 17
648 85.00 temperature 20.0 10 > th dose independent rect. 5 18
653 85.01 temperature 20.0 30 > th dose independent rect. 8 2
655 85.01 humidity 70.0 90 > th dose independent rect. 16 18
659 85.02 precipitation 0.1 90 > th dose independent rect. 21 1
671 85.02 precipitation 0.1 90 > th dose dependent rect. 21 1
676 85.02 radiation 30.0 10 < th dose dependent rect. 8 22
695 85.05 radiation 10.0 10 < th dose independent rect. 5 1
701 85.05 humidity 50.0 10 > th dose dependent rect. 5 1
704 85.06 wind 7.0 10 < th dose independent rect. 5 1
707 85.06 temperature 10.0 10 > th dose independent rect. 5 1
709 85.06 temperature 30.0 10 < th dose independent rect. 5 1
710 85.06 humidity 50.0 10 > th dose independent rect. 5 1
713 85.06 atmosphere 995.0 10 > th dose independent rect. 5 1
714 85.06 atmosphere 1010.0 10 < th dose independent rect. 5 1
721 85.06 temperature 10.0 10 > th dose independent rect. 6 23
723 85.06 wind 1.0 270 < th dose dependent rect. 8 2
733 85.07 wind 1.0 270 < th dose independent rect. 7 17
743 85.08 precipitation 0.1 10 < th dose independent rect. 5 1
748 85.08 precipitation 0.1 10 < th dose dependent rect. 5 1
761 85.09 radiation 40.0 10 < th dose dependent rect. 5 1
766 85.10 radiation 1.0 10 > th dose independent rect. 5 1
790 85.11 temperature 30.0 10 < th dose independent rect. 5 5
793 85.11 humidity 70.0 10 > th dose independent rect. 24 11
809 85.13 radiation 30.0 30 < th dose independent rect. 24 10
816 85.13 atmosphere 995.0 30 > th dose dependent rect. 8 2
822 85.13 radiation 40.0 10 < th dose dependent rect. 5 5
834 85.14 humidity 80.0 1440 < th dose independent sin 9 NA
837 85.14 wind 1.0 10 > th dose dependent rect. 8 2
841 85.15 temperature 25.0 270 > th dose independent rect. 2 1
878 85.18 humidity 70.0 720 > th dose dependent rect. 22 9
885 85.19 wind 9.0 10 < th dose independent rect. 6 23
901 85.21 wind 3.0 10 > th dose independent rect. 8 3
908 85.21 radiation 20.0 10 < th dose independent rect. 5 14
916 85.21 wind 1.0 270 < th dose dependent rect. 7 13
927 85.22 radiation 30.0 10 < th dose dependent rect. 5 22
932 85.23 atmosphere 1010.0 30 < th dose independent rect. 24 10
934 85.23 atmosphere 1015.0 30 < th dose independent rect. 10 22
955 85.25 humidity 80.0 1440 > th dose independent sin 9 NA
957 85.25 radiation 10.0 1440 > th dose independent rect. 5 1
958 85.25 humidity 90.0 30 < th dose independent rect. 8 2
975 85.25 radiation 10.0 1440 > th dose dependent rect. 5 1