Os09g0546100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0546100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin responsive SAUR protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.32	(0.0185)	R²	:	0.00148
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.032	(0.0389)	R²_dN8	:	0.00191	R²_N8	:	0.00148
σ	:	0.348
deviance	:	55.61
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
50.68	0.334	3.21	1.1	0.212	-0.719	-0.235	5.7	0.00838	6.83	29.33	1543	--	--
51.98	0.336	3.32	0.144	0.222	-0.0903	-0.225	--	-0.0342	6.68	33.65	1659	--	--
50.73	0.332	3.21	1.08	0.219	-0.768	--	6.02	0.0301	7.13	29.11	1743	--	--
52.01	0.336	3.32	0.143	0.228	-0.109	--	--	-0.0374	6.64	33.33	1080	--	--
52.62	0.338	3.2	1.18	--	-0.825	--	6.43	0.0725	--	28.76	1837	--	--
52.41	0.339	3.32	0.123	0.226	--	-0.223	--	-0.0231	6.9	--	--	--	--
52.53	0.339	3.32	0.119	0.225	--	--	--	-0.0224	7	--	--	--	--
54.67	0.344	3.32	0.146	--	-0.105	--	--	-0.0347	--	33.3	1058	--	--
52.53	0.338	3.32	--	0.227	-0.0909	--	--	-0.051	6.73	33.48	1062	--	--
55.2	0.347	3.32	0.124	--	--	--	--	-0.0183	--	--	--	--	--
52.91	0.34	3.32	--	0.227	--	--	--	-0.0357	6.97	--	--	--	--
55.23	0.346	3.33	--	--	-0.0881	--	--	-0.0481	--	33.1	1052	--	--
55.61	0.348	3.32	--	--	--	--	--	-0.032	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	47.05	radiation	10.0	30	> th	dose independent	rect.	7	1
2	47.32	atmosphere	1005.0	10	> th	dose dependent	rect.	2	2
3	47.34	atmosphere	995.0	10	> th	dose independent	rect.	3	23
9	47.63	humidity	80.0	10	< th	dose independent	rect.	6	2
25	47.74	atmosphere	1010.0	30	< th	dose dependent	rect.	2	1
30	47.95	wind	3.0	10	< th	dose independent	rect.	2	1
32	47.97	humidity	80.0	10	< th	dose independent	rect.	23	9
33	47.97	wind	5.0	10	< th	dose dependent	rect.	2	1
38	47.98	temperature	15.0	10	> th	dose independent	rect.	3	23
44	48.01	temperature	10.0	10	> th	dose dependent	rect.	2	1
48	48.02	temperature	10.0	10	> th	dose independent	rect.	2	1
50	48.02	temperature	30.0	10	< th	dose independent	rect.	2	1
51	48.02	humidity	50.0	10	> th	dose independent	rect.	2	1
54	48.02	atmosphere	995.0	10	> th	dose independent	rect.	2	1
55	48.02	atmosphere	1010.0	10	< th	dose independent	rect.	2	1
57	48.02	radiation	1.0	10	< th	dose independent	rect.	2	1
62	48.02	precipitation	0.1	10	< th	dose independent	rect.	2	1
65	48.02	radiation	1.0	10	< th	dose dependent	rect.	2	1
70	48.02	precipitation	0.1	10	< th	dose dependent	rect.	2	1
71	48.03	humidity	50.0	10	> th	dose dependent	rect.	2	1
77	48.04	humidity	90.0	30	> th	dose dependent	rect.	2	1
87	48.06	temperature	30.0	30	< th	dose dependent	rect.	2	1
93	48.07	humidity	90.0	10	> th	dose independent	rect.	2	1
117	48.08	humidity	90.0	90	< th	dose independent	rect.	1	7
124	48.09	wind	1.0	30	> th	dose independent	rect.	2	1
125	48.09	radiation	10.0	10	> th	dose independent	rect.	16	16
133	48.13	atmosphere	995.0	30	> th	dose dependent	rect.	2	1
138	48.16	atmosphere	1005.0	30	> th	dose independent	rect.	2	1
140	48.16	wind	9.0	30	< th	dose independent	rect.	3	23
145	48.18	radiation	1.0	43200	< th	dose dependent	rect.	3	1
154	48.53	precipitation	0.1	30	< th	dose independent	rect.	3	23
155	48.53	precipitation	0.1	30	< th	dose dependent	rect.	3	23
178	48.65	humidity	80.0	14400	< th	dose dependent	rect.	1	8
193	48.84	radiation	1.0	4320	< th	dose dependent	rect.	3	1
197	48.88	wind	9.0	1440	< th	dose independent	rect.	3	1
198	48.88	temperature	10.0	1440	> th	dose independent	rect.	3	1
201	48.88	temperature	30.0	1440	< th	dose independent	rect.	3	1
205	48.88	humidity	50.0	1440	> th	dose independent	rect.	3	1
214	48.88	atmosphere	995.0	1440	> th	dose independent	rect.	3	1
215	48.88	radiation	1.0	1440	< th	dose independent	rect.	3	1
235	48.88	temperature	10.0	1440	> th	dose independent	rect.	4	23
260	49.01	humidity	50.0	30	> th	dose independent	rect.	3	23
261	49.02	wind	7.0	14400	< th	dose dependent	rect.	11	1
266	49.10	humidity	90.0	90	< th	dose independent	rect.	2	1
267	49.11	wind	1.0	14400	> th	dose dependent	rect.	11	1
270	49.13	humidity	90.0	90	< th	dose dependent	rect.	1	7
273	49.17	humidity	90.0	90	< th	dose independent	rect.	1	3
275	49.18	wind	5.0	14400	< th	dose independent	rect.	11	2
289	49.27	atmosphere	995.0	720	> th	dose independent	rect.	23	16
296	49.33	wind	5.0	14400	> th	dose independent	rect.	11	2
303	49.38	atmosphere	1000.0	30	> th	dose independent	rect.	8	23
304	49.38	humidity	80.0	14400	< th	dose dependent	rect.	7	1
326	49.49	humidity	90.0	10	< th	dose dependent	rect.	7	1
335	49.53	wind	5.0	14400	< th	dose independent	rect.	9	6
374	49.59	wind	5.0	14400	> th	dose independent	rect.	9	6
380	49.62	temperature	25.0	30	> th	dose independent	rect.	7	1
381	49.62	humidity	80.0	14400	< th	dose independent	rect.	7	1
401	49.67	atmosphere	995.0	720	> th	dose independent	rect.	7	8
413	49.72	humidity	70.0	14400	> th	dose independent	rect.	8	1
426	49.74	radiation	10.0	30	< th	dose independent	rect.	3	23
443	49.77	radiation	1.0	30	> th	dose dependent	rect.	7	1
458	49.79	radiation	10.0	30	< th	dose dependent	rect.	3	23
469	49.82	humidity	80.0	90	< th	dose dependent	rect.	24	3
533	49.97	humidity	80.0	4320	> th	dose independent	rect.	7	3
538	49.97	humidity	90.0	90	< th	dose independent	rect.	1	20
540	49.97	humidity	70.0	4320	> th	dose dependent	rect.	3	6
541	49.98	radiation	10.0	10	> th	dose independent	sin	11	NA
545	49.98	humidity	70.0	14400	> th	dose independent	rect.	4	5
547	49.98	humidity	70.0	14400	> th	dose independent	rect.	24	9
551	49.98	wind	5.0	10	< th	dose dependent	rect.	7	1
565	50.00	wind	5.0	30	< th	dose independent	rect.	7	1
573	50.01	atmosphere	1005.0	30	> th	dose independent	rect.	7	1
574	50.01	temperature	10.0	720	> th	dose independent	rect.	15	8
576	50.01	temperature	10.0	720	> th	dose independent	rect.	23	16
593	50.04	humidity	90.0	90	< th	dose independent	rect.	1	16
610	50.06	humidity	80.0	4320	< th	dose independent	rect.	7	3
618	50.07	wind	1.0	30	> th	dose independent	rect.	7	1
635	50.07	humidity	80.0	4320	> th	dose independent	rect.	7	6
648	50.08	wind	3.0	14400	< th	dose independent	rect.	19	1
653	50.08	humidity	90.0	10	< th	dose dependent	rect.	2	2
658	50.09	wind	9.0	720	< th	dose independent	rect.	19	8
664	50.09	humidity	80.0	720	> th	dose dependent	rect.	3	1
674	50.10	temperature	30.0	1440	> th	dose independent	rect.	14	21
676	50.11	wind	3.0	14400	> th	dose independent	rect.	19	2
694	50.13	wind	5.0	14400	< th	dose independent	sin	0	NA
698	50.13	humidity	90.0	4320	> th	dose independent	rect.	3	2
706	50.14	humidity	90.0	720	> th	dose independent	rect.	3	1
709	50.14	temperature	10.0	720	> th	dose independent	rect.	3	8
710	50.14	atmosphere	995.0	720	> th	dose independent	rect.	3	8
711	50.14	temperature	10.0	720	> th	dose independent	rect.	11	16
719	50.15	humidity	90.0	720	< th	dose independent	rect.	1	3
722	50.15	humidity	90.0	4320	< th	dose independent	rect.	3	6
726	50.15	temperature	15.0	10	> th	dose dependent	rect.	7	1
737	50.16	wind	5.0	14400	< th	dose independent	rect.	24	17
738	50.16	temperature	30.0	1440	< th	dose independent	rect.	14	21
739	50.16	atmosphere	1000.0	30	> th	dose independent	rect.	10	21
746	50.16	humidity	80.0	4320	> th	dose dependent	rect.	3	10
753	50.17	wind	5.0	14400	> th	dose independent	rect.	24	17
764	50.18	wind	5.0	14400	> th	dose independent	sin	0	NA
785	50.19	humidity	60.0	43200	< th	dose independent	rect.	11	1
789	50.19	precipitation	0.1	14400	> th	dose independent	rect.	24	9
816	50.20	humidity	80.0	4320	> th	dose dependent	rect.	7	1
835	50.22	precipitation	0.1	14400	< th	dose independent	rect.	24	9
839	50.22	precipitation	0.1	14400	< th	dose independent	rect.	24	11
846	50.22	precipitation	0.1	14400	< th	dose dependent	rect.	24	9
847	50.22	precipitation	0.1	14400	< th	dose dependent	rect.	24	11
889	50.25	wind	3.0	1440	> th	dose independent	rect.	6	2
897	50.25	wind	9.0	720	< th	dose independent	rect.	15	16
901	50.25	wind	9.0	30	< th	dose independent	rect.	8	23
902	50.25	wind	5.0	14400	< th	dose dependent	rect.	19	1
910	50.26	precipitation	0.1	10	< th	dose independent	rect.	7	1
911	50.26	humidity	90.0	10	< th	dose independent	rect.	2	2
913	50.26	temperature	20.0	90	> th	dose independent	rect.	3	3
918	50.26	wind	9.0	720	< th	dose independent	rect.	3	8
924	50.26	wind	1.0	14400	< th	dose dependent	rect.	2	1
925	50.26	precipitation	0.1	10	< th	dose dependent	rect.	7	1
940	50.27	temperature	10.0	10	> th	dose independent	rect.	7	1
944	50.27	temperature	30.0	10	< th	dose independent	rect.	7	1
946	50.27	humidity	50.0	10	> th	dose independent	rect.	7	1
950	50.27	atmosphere	995.0	10	> th	dose independent	rect.	7	1
952	50.27	atmosphere	1015.0	10	< th	dose independent	rect.	7	1
965	50.27	temperature	10.0	10	> th	dose independent	rect.	8	23
967	50.27	wind	9.0	4320	< th	dose dependent	rect.	6	1
977	50.28	wind	9.0	1440	< th	dose independent	rect.	8	1
980	50.28	temperature	10.0	1440	> th	dose independent	rect.	8	1
985	50.28	humidity	50.0	1440	> th	dose independent	rect.	8	1
989	50.28	atmosphere	995.0	1440	> th	dose independent	rect.	8	1
992	50.28	atmosphere	1015.0	1440	< th	dose independent	rect.	8	1