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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0546500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin induced protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0415) R2 : 0.44
β1 : -0.703 (0.173) R2dD : 0.0286 R2D : -0.0229
β2 : 1.06 (0.114) R2dC : 0.123 R2C : 0.187
β3 : 0.821 (0.147) R2dE : 0.0514 R2E : 0.143
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.56 (1.13) R2dD*E : 0.0792 R2D*E : 0.0849
γ1 : 0.45 (0.0957) R2dN8 : 0.0449 R2N8 : 0.0957
σ : 0.758
deviance : 264.61
__
_____
C
peak time of C : 6.24
E
wheather : temperature
threshold : 24.76
memory length : 267
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.26
open length of G : 0.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
264.94 0.765 3.41 -0.694 1.06 0.859 -0.279 -7.86 0.462 6.23 24.85 264 6.28 0.733
282.56 0.783 3.38 -0.0172 1.17 1.23 -0.327 -- 0.617 6.2 24.1 213 5.73 0.729
264.61 0.758 3.41 -0.703 1.06 0.821 -- -7.56 0.45 6.24 24.76 267 6.26 0.7
281.41 0.781 3.4 -0.101 1.05 1.22 -- -- 0.574 6.49 24.16 205 5.75 0.383
314.26 0.826 3.46 -0.663 -- 1.32 -- -7.59 0.351 -- 24.6 273 6.16 0.632
310.12 0.826 3.34 -0.0714 1.39 -- -1.05 -- 0.826 6.63 -- -- -- --
312.9 0.828 3.33 -0.0868 1.38 -- -- -- 0.829 6.68 -- -- -- --
325.81 0.841 3.4 -0.0802 -- 1.67 -- -- 0.588 -- 23.5 243 5.42 0.705
281.31 0.781 3.4 -- 1.03 1.25 -- -- 0.59 6.48 24 196 5.68 0.45
412.7 0.949 3.36 -0.0545 -- -- -- -- 0.857 -- -- -- -- --
313.1 0.828 3.33 -- 1.38 -- -- -- 0.839 6.68 -- -- -- --
325.84 0.841 3.42 -- -- 1.74 -- -- 0.606 -- 23.6 240 5.42 0.767
412.78 0.948 3.36 -- -- -- -- -- 0.863 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.42 temperature 20.0 270 > th dose dependent rect. 3 4
5 275.82 temperature 25.0 270 > th dose independent rect. 6 1
7 276.40 wind 3.0 10 < th dose dependent rect. 6 1
9 276.82 atmosphere 1000.0 30 > th dose independent rect. 7 23
14 277.42 temperature 25.0 10 > th dose independent rect. 5 2
15 277.47 temperature 25.0 10 > th dose independent rect. 5 4
18 278.75 temperature 25.0 10 > th dose independent rect. 5 6
19 278.89 humidity 80.0 30 > th dose dependent rect. 6 1
23 279.28 atmosphere 1005.0 30 > th dose dependent rect. 6 1
25 279.54 radiation 1.0 30 > th dose dependent rect. 6 1
32 279.87 temperature 30.0 30 < th dose dependent rect. 6 1
33 279.88 wind 9.0 30 < th dose independent rect. 7 23
35 280.01 wind 3.0 30 < th dose independent rect. 6 1
36 280.03 humidity 80.0 10 > th dose independent rect. 6 1
38 280.09 radiation 1.0 10 > th dose independent rect. 6 1
44 280.31 radiation 20.0 10 < th dose dependent rect. 6 1
45 280.31 temperature 20.0 720 > th dose dependent rect. 19 12
51 280.52 humidity 90.0 10 < th dose independent rect. 6 1
53 280.57 temperature 20.0 30 > th dose dependent rect. 5 2
64 280.90 atmosphere 1000.0 30 > th dose independent rect. 6 1
71 280.91 temperature 10.0 30 > th dose independent rect. 6 1
73 280.91 temperature 30.0 30 < th dose independent rect. 6 1
74 280.91 humidity 50.0 30 > th dose independent rect. 6 1
78 280.91 atmosphere 1015.0 30 < th dose independent rect. 6 1
79 280.91 radiation 20.0 30 < th dose independent rect. 6 1
82 280.91 precipitation 0.1 30 < th dose independent rect. 6 1
83 280.91 temperature 10.0 30 > th dose independent rect. 7 23
84 280.91 precipitation 0.1 30 < th dose dependent rect. 6 1
86 280.97 wind 9.0 1440 < th dose independent rect. 7 1
87 280.97 temperature 10.0 1440 > th dose independent rect. 7 1
91 280.97 temperature 30.0 1440 < th dose independent rect. 7 1
95 280.97 humidity 50.0 1440 > th dose independent rect. 7 1
100 280.97 atmosphere 995.0 1440 > th dose independent rect. 7 1
101 280.97 atmosphere 1015.0 1440 < th dose independent rect. 7 1
102 280.97 temperature 10.0 1440 > th dose independent rect. 8 23
130 281.29 precipitation 0.1 30 < th dose independent rect. 7 23
131 281.29 temperature 10.0 10 > th dose dependent rect. 6 1
132 281.29 precipitation 0.1 30 < th dose dependent rect. 7 23
134 281.37 wind 1.0 30 > th dose independent rect. 6 1
142 281.75 radiation 10.0 10 < th dose independent rect. 6 6
147 281.87 temperature 25.0 10 > th dose independent rect. 1 10
165 283.00 atmosphere 1015.0 30 < th dose independent rect. 7 23
171 283.15 humidity 50.0 30 > th dose independent rect. 7 23
179 283.61 radiation 10.0 10 < th dose independent rect. 6 4
185 283.78 atmosphere 1015.0 30 < th dose dependent rect. 6 1
193 284.24 temperature 10.0 720 > th dose dependent rect. 19 12
212 284.89 temperature 20.0 30 > th dose dependent rect. 3 4
214 284.92 temperature 25.0 270 < th dose dependent rect. 23 11
223 285.14 humidity 90.0 10 < th dose dependent rect. 6 1
225 285.27 temperature 30.0 720 < th dose dependent rect. 20 9
245 285.97 temperature 25.0 720 < th dose dependent rect. 21 6
263 286.40 atmosphere 1005.0 10 > th dose dependent rect. 6 3
265 286.46 temperature 25.0 270 < th dose dependent sin 7 NA
282 286.69 temperature 10.0 270 > th dose dependent sin 8 NA
285 286.71 radiation 20.0 10 < th dose independent rect. 8 23
296 286.88 temperature 20.0 720 > th dose dependent sin 11 NA
305 286.94 temperature 20.0 270 > th dose dependent sin 8 NA
324 287.09 temperature 30.0 30 < th dose independent rect. 7 23
328 287.20 radiation 10.0 30 > th dose dependent rect. 17 14
430 287.99 wind 1.0 30 > th dose dependent rect. 6 1
432 288.04 radiation 20.0 10 < th dose independent rect. 3 23
434 288.09 radiation 20.0 10 < th dose dependent rect. 6 7
479 288.70 atmosphere 1005.0 270 > th dose dependent rect. 3 4
484 288.85 temperature 15.0 30 > th dose dependent sin 7 NA
509 288.91 radiation 20.0 10 < th dose independent rect. 17 23
511 288.96 temperature 25.0 10 < th dose independent sin 6 NA
530 289.18 radiation 40.0 10 < th dose dependent rect. 8 23
561 289.56 wind 3.0 14400 < th dose independent rect. 11 1
568 289.64 temperature 20.0 720 < th dose independent rect. 22 5
578 289.75 radiation 20.0 10 < th dose independent rect. 6 12
579 289.78 radiation 20.0 10 < th dose independent rect. 21 23
582 289.80 temperature 25.0 720 < th dose dependent sin 12 NA
591 289.93 temperature 25.0 10 > th dose independent sin 7 NA
601 289.99 radiation 40.0 10 < th dose dependent rect. 3 23
606 290.03 wind 3.0 14400 > th dose independent rect. 11 1
612 290.07 radiation 20.0 10 < th dose independent rect. 6 14
615 290.10 temperature 20.0 720 > th dose independent rect. 19 12
616 290.11 temperature 20.0 720 < th dose independent rect. 23 3
646 290.37 temperature 20.0 720 > th dose independent rect. 21 10
656 290.45 temperature 25.0 4320 > th dose dependent rect. 5 3
657 290.47 radiation 40.0 1440 < th dose independent rect. 7 1
658 290.47 radiation 20.0 10 < th dose independent rect. 6 20
660 290.49 temperature 20.0 720 > th dose independent rect. 21 7
676 290.64 radiation 20.0 10 < th dose independent rect. 6 17
678 290.66 radiation 20.0 10 < th dose independent rect. 6 23
750 291.18 temperature 25.0 720 > th dose independent rect. 21 1
751 291.19 temperature 20.0 720 > th dose independent rect. 23 2
756 291.22 radiation 20.0 10 < th dose independent sin 4 NA
769 291.28 radiation 40.0 10 < th dose dependent rect. 6 12
786 291.37 wind 3.0 14400 > th dose independent rect. 8 6
799 291.42 wind 3.0 14400 < th dose independent rect. 8 6
804 291.43 radiation 20.0 10 < th dose independent rect. 17 21
863 291.69 radiation 20.0 10 < th dose dependent rect. 6 4
891 291.80 atmosphere 1005.0 30 > th dose dependent rect. 3 6
897 291.83 wind 1.0 30 > th dose independent rect. 7 23
900 291.86 radiation 20.0 10 < th dose independent rect. 17 19
911 291.94 temperature 25.0 270 < th dose dependent rect. 3 6
919 291.99 wind 5.0 14400 < th dose dependent rect. 11 1
924 292.01 radiation 20.0 10 < th dose independent rect. 15 23
936 292.06 radiation 20.0 10 < th dose independent rect. 19 23
946 292.11 radiation 20.0 10 < th dose independent no NA NA
949 292.11 radiation 1.0 10 > th dose dependent rect. 7 23
963 292.23 radiation 20.0 10 < th dose independent rect. 13 23
985 292.33 radiation 20.0 10 < th dose independent rect. 11 23
986 292.34 temperature 25.0 4320 < th dose independent rect. 5 2