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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0546000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin induced protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.9 (0.0701) R2 : 0.87
β1 : -4.83 (0.257) R2dD : 0.104 R2D : 0.0826
β2 : 9.31 (0.184) R2dC : 0.74 R2C : 0.667
β3 : -2.67 (0.182) R2dE : 0.0621 R2E : 0.0309
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.66 (0.15) R2dN8 : 0.0472 R2N8 : 0.00327
σ : 1.31
deviance : 791.64
__
_____
C
peak time of C : 6.15
E
wheather : temperature
threshold : 20.09
memory length : 195
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.8
open length of G : 5.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
779.65 1.31 7.92 -4.91 9.29 -2.64 0.812 -2.09 -1.68 6.14 20.2 200 20.7 5.25
790.48 1.31 7.9 -4.81 9.32 -2.67 0.696 -- -1.66 6.14 20.06 197 20.7 5.3
781.25 1.3 7.92 -4.89 9.29 -2.64 -- -2.03 -1.68 6.14 20.18 198 20.7 5.23
791.64 1.31 7.9 -4.83 9.31 -2.67 -- -- -1.66 6.15 20.09 195 20.8 5.27
4803.12 3.23 8 -4.61 -- -3.17 -- -1.24 -1.18 -- 19.8 15 20.7 5.1
984.54 1.47 7.88 -5.09 9.18 -- 1.48 -- -1.7 6.86 -- -- -- --
990.13 1.47 7.89 -5.07 9.18 -- -- -- -1.7 6.84 -- -- -- --
875.21 1.38 8.1 -4.94 -- -8.27 -- -- -1.57 -- 18.08 360 9.58 12.9
1390.86 1.74 7.82 -- 9.49 -3.27 -- -- -1.14 5.97 19.6 207 20.6 5.52
5408.32 3.44 8.08 -4.87 -- -- -- -- -1.52 -- -- -- -- --
1666.83 1.91 7.76 -- 9.13 -- -- -- -1.14 6.88 -- -- -- --
1255.66 1.65 7.93 -- -- -8.22 -- -- -0.841 -- 19.2 349 9.52 13.4
6033.26 3.63 7.96 -- -- -- -- -- -0.984 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 786.07 temperature 20.0 270 > th dose independent rect. 20 5
2 786.41 temperature 20.0 270 > th dose independent rect. 21 3
6 794.18 temperature 20.0 270 > th dose independent rect. 11 14
8 796.67 temperature 15.0 270 > th dose dependent rect. 21 3
9 797.71 temperature 15.0 10 > th dose dependent rect. 22 5
20 804.06 temperature 20.0 10 > th dose independent rect. 22 5
43 819.08 precipitation 0.1 270 < th dose independent rect. 1 10
44 819.08 precipitation 0.1 270 < th dose dependent rect. 1 10
56 823.03 radiation 40.0 270 < th dose independent rect. 24 11
65 824.80 humidity 70.0 10 > th dose dependent rect. 22 5
72 826.82 humidity 80.0 30 > th dose independent rect. 22 5
73 826.90 temperature 20.0 90 > th dose independent rect. 22 18
75 827.20 humidity 50.0 270 > th dose independent rect. 1 10
77 827.80 temperature 10.0 270 > th dose independent rect. 1 10
78 827.80 atmosphere 995.0 270 > th dose independent rect. 1 10
79 827.80 atmosphere 1015.0 270 < th dose independent rect. 1 10
87 828.92 humidity 50.0 720 > th dose dependent rect. 19 5
90 829.47 wind 3.0 30 < th dose independent rect. 22 5
96 830.25 wind 9.0 270 < th dose independent rect. 1 10
110 832.98 humidity 70.0 270 > th dose dependent rect. 22 2
111 833.04 humidity 60.0 720 > th dose dependent rect. 20 3
120 833.81 humidity 80.0 270 > th dose independent rect. 22 2
128 834.47 temperature 20.0 10 > th dose independent rect. 22 18
146 836.18 radiation 40.0 270 < th dose independent rect. 24 20
152 836.56 wind 7.0 30 < th dose dependent rect. 22 5
158 837.50 wind 9.0 270 < th dose independent rect. 11 14
174 839.26 precipitation 0.1 10 < th dose independent rect. 3 10
176 839.26 precipitation 0.1 10 < th dose dependent rect. 3 10
177 839.28 wind 5.0 270 < th dose independent rect. 22 1
199 841.02 humidity 80.0 270 > th dose independent rect. 20 5
215 842.21 radiation 40.0 90 < th dose independent rect. 3 18
224 842.75 precipitation 0.1 270 < th dose independent rect. 11 14
225 842.75 precipitation 0.1 270 < th dose dependent rect. 11 14
229 843.27 temperature 30.0 270 < th dose independent rect. 24 10
248 844.32 wind 5.0 270 < th dose independent rect. 21 3
249 844.34 atmosphere 1000.0 10 > th dose independent rect. 22 5
256 844.76 precipitation 0.1 10 < th dose independent rect. 3 19
257 844.76 precipitation 0.1 10 < th dose dependent rect. 3 19
279 846.15 temperature 10.0 10 > th dose independent rect. 3 10
281 846.15 atmosphere 995.0 10 > th dose independent rect. 3 10
282 846.15 atmosphere 1015.0 10 < th dose independent rect. 3 10
284 846.18 wind 9.0 30 < th dose dependent rect. 16 6
314 847.36 wind 1.0 270 > th dose independent rect. 21 2
316 847.52 precipitation 0.1 10 < th dose independent rect. 13 14
317 847.52 precipitation 0.1 10 < th dose dependent rect. 13 14
342 848.93 humidity 60.0 90 > th dose independent rect. 3 9
343 848.96 precipitation 0.1 270 < th dose independent rect. 24 21
344 848.96 precipitation 0.1 270 < th dose dependent rect. 24 21
351 849.49 humidity 50.0 10 > th dose independent rect. 3 10
354 849.50 temperature 15.0 270 > th dose independent rect. 23 23
363 849.64 wind 7.0 270 < th dose dependent rect. 16 3
370 849.91 atmosphere 1000.0 270 > th dose independent rect. 21 3
380 850.61 wind 9.0 10 < th dose independent rect. 22 5
381 850.61 temperature 10.0 10 > th dose independent rect. 22 5
382 850.61 temperature 30.0 10 < th dose independent rect. 22 5
383 850.61 humidity 50.0 10 > th dose independent rect. 22 5
387 850.61 radiation 1.0 10 < th dose independent rect. 22 5
392 850.61 temperature 10.0 10 > th dose independent rect. 3 19
394 850.61 atmosphere 1015.0 10 < th dose independent rect. 3 19
395 850.61 radiation 1.0 10 < th dose dependent rect. 22 5
403 850.77 wind 9.0 30 < th dose independent rect. 3 19
431 851.15 precipitation 0.1 30 < th dose independent rect. 22 5
432 851.15 precipitation 0.1 30 < th dose dependent rect. 22 5
443 851.41 radiation 40.0 90 < th dose independent rect. 3 9
450 851.61 wind 9.0 30 < th dose independent rect. 3 10
465 852.06 wind 9.0 10 < th dose independent rect. 13 14
475 852.41 temperature 15.0 270 > th dose independent rect. 19 21
484 852.95 atmosphere 1015.0 10 < th dose independent rect. 22 5
494 853.32 atmosphere 995.0 10 > th dose independent rect. 3 19
512 854.17 wind 9.0 270 < th dose dependent rect. 22 1
529 854.98 precipitation 0.1 270 < th dose independent rect. 21 3
530 854.98 precipitation 0.1 270 < th dose dependent rect. 21 3
568 856.02 radiation 20.0 14400 < th dose dependent rect. 23 5
575 856.32 wind 7.0 10 < th dose independent rect. 16 6
578 856.36 wind 9.0 270 < th dose independent rect. 24 21
584 856.51 radiation 30.0 14400 < th dose independent rect. 17 6
585 856.55 radiation 1.0 270 < th dose dependent rect. 21 3
586 856.56 temperature 10.0 270 > th dose independent rect. 21 3
587 856.56 temperature 30.0 270 < th dose independent rect. 21 3
588 856.56 humidity 50.0 270 > th dose independent rect. 21 3
592 856.56 radiation 1.0 270 < th dose independent rect. 21 3
611 856.85 wind 9.0 270 < th dose independent rect. 21 3
659 857.84 precipitation 0.1 270 < th dose independent rect. 22 1
661 857.84 precipitation 0.1 270 < th dose dependent rect. 22 1
698 858.62 temperature 10.0 30 > th dose dependent rect. 22 18
702 858.66 wind 1.0 270 > th dose independent rect. 15 13
745 859.35 atmosphere 1015.0 270 < th dose independent rect. 21 3
746 859.40 atmosphere 1015.0 270 < th dose independent rect. 11 13
761 859.98 wind 9.0 10 < th dose independent rect. 22 18
828 860.72 atmosphere 1015.0 10 < th dose independent rect. 13 14
836 860.95 wind 5.0 270 < th dose independent rect. 16 3
847 861.26 radiation 20.0 10 < th dose independent rect. 16 6
850 861.29 radiation 40.0 10 < th dose dependent rect. 16 6
867 861.67 temperature 10.0 10 > th dose independent rect. 16 6
869 861.67 atmosphere 1010.0 10 < th dose independent rect. 16 6
905 862.05 atmosphere 1015.0 270 < th dose independent rect. 24 20
919 862.31 precipitation 0.1 10 < th dose independent rect. 16 6
920 862.31 precipitation 0.1 10 < th dose dependent rect. 16 6
940 862.77 atmosphere 1015.0 270 < th dose independent rect. 22 1
954 863.03 atmosphere 1015.0 10 < th dose independent rect. 22 18
957 863.14 atmosphere 995.0 270 > th dose independent rect. 24 21
963 863.27 radiation 40.0 270 < th dose dependent rect. 24 19