Os09g0547000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin induced protein.
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Os09g0547000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin induced protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.48 | 0.347 | 2.88 | 0.289 | 0.0204 | 0.595 | 0.548 | 2.37 | 0.0398 | 19.3 | 3.222 | 1387 | -- | -- |
| 56.6 | 0.35 | 2.84 | 0.267 | 0.0154 | 0.436 | -0.639 | -- | 0.0473 | 7.43 | 0.809 | 1923 | -- | -- |
| 55.27 | 0.346 | 2.88 | 0.272 | 0.0184 | 0.616 | -- | 2.54 | 0.0379 | 19.7 | 3.347 | 1439 | -- | -- |
| 57.35 | 0.353 | 2.84 | 0.227 | 0.00627 | 0.384 | -- | -- | 0.0543 | 19.1 | 0.4715 | 1508 | -- | -- |
| 55.27 | 0.346 | 2.88 | 0.287 | -- | 0.645 | -- | 2.62 | 0.0465 | -- | 3.443 | 1530 | -- | -- |
| 57.65 | 0.356 | 2.84 | 0.149 | 0.0277 | -- | 0.533 | -- | 0.069 | 19.9 | -- | -- | -- | -- |
| 58.42 | 0.358 | 2.84 | 0.134 | 0.0394 | -- | -- | -- | 0.0689 | 23.3 | -- | -- | -- | -- |
| 57.34 | 0.353 | 2.84 | 0.224 | -- | 0.366 | -- | -- | 0.0539 | -- | 1.252e-06 | 1500 | -- | -- |
| 58.45 | 0.356 | 2.85 | -- | 0.0144 | 0.247 | -- | -- | 0.0263 | 20.7 | -5.038 | 1499 | -- | -- |
| 58.52 | 0.357 | 2.84 | 0.135 | -- | -- | -- | -- | 0.0692 | -- | -- | -- | -- | -- |
| 58.89 | 0.359 | 2.84 | -- | 0.0408 | -- | -- | -- | 0.054 | 23.5 | -- | -- | -- | -- |
| 58.46 | 0.356 | 2.85 | -- | -- | 0.233 | -- | -- | 0.0386 | -- | -3.636 | 1500 | -- | -- |
| 59 | 0.359 | 2.84 | -- | -- | -- | -- | -- | 0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.80 | wind | 1.0 | 30 | < th | dose independent | rect. | 17 | 1 |
| 12 | 50.80 | wind | 1.0 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 39 | 51.35 | humidity | 70.0 | 90 | < th | dose independent | rect. | 17 | 1 |
| 54 | 51.52 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 126 | 53.02 | wind | 5.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 127 | 53.05 | wind | 7.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 143 | 53.09 | wind | 7.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 160 | 53.31 | wind | 7.0 | 270 | > th | dose dependent | rect. | 19 | 1 |
| 169 | 53.70 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 191 | 53.91 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 196 | 53.97 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 220 | 54.04 | wind | 5.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 221 | 54.05 | wind | 5.0 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 226 | 54.07 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 240 | 54.12 | wind | 9.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 243 | 54.12 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 248 | 54.13 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 24 | 20 |
| 253 | 54.15 | radiation | 30.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 257 | 54.16 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 258 | 54.16 | wind | 7.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 260 | 54.16 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 262 | 54.16 | temperature | 30.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 263 | 54.16 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 265 | 54.16 | humidity | 90.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 266 | 54.16 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 268 | 54.16 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 270 | 54.16 | radiation | 1.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 271 | 54.16 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 1 |
| 272 | 54.16 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 273 | 54.16 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 278 | 54.17 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 286 | 54.18 | wind | 1.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 287 | 54.18 | wind | 9.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 289 | 54.18 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 298 | 54.19 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 303 | 54.20 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 304 | 54.20 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 311 | 54.21 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 320 | 54.22 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 347 | 54.26 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 357 | 54.27 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 360 | 54.27 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 363 | 54.27 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 365 | 54.27 | wind | 5.0 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 366 | 54.27 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 380 | 54.29 | wind | 1.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 400 | 54.31 | wind | 5.0 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 427 | 54.33 | wind | 9.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 448 | 54.34 | wind | 5.0 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 458 | 54.35 | wind | 5.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 518 | 54.40 | wind | 5.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 519 | 54.40 | wind | 5.0 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 531 | 54.41 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 14 | 2 |
| 572 | 54.43 | humidity | 50.0 | 270 | < th | dose independent | rect. | 14 | 4 |
| 617 | 54.45 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 4 |
| 629 | 54.45 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 639 | 54.46 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 642 | 54.46 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 677 | 54.47 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 695 | 54.49 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 696 | 54.49 | wind | 5.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 727 | 54.50 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 751 | 54.51 | wind | 3.0 | 1440 | > th | dose dependent | no | NA | NA |
| 777 | 54.53 | wind | 5.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 789 | 54.53 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 793 | 54.54 | wind | 5.0 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 811 | 54.54 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 846 | 54.56 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 847 | 54.56 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 893 | 54.59 | wind | 5.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 932 | 54.60 | wind | 5.0 | 1440 | < th | dose independent | no | NA | NA |
| 952 | 54.60 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 953 | 54.60 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 958 | 54.61 | wind | 5.0 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 959 | 54.61 | wind | 5.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 961 | 54.61 | wind | 9.0 | 1440 | < th | dose dependent | no | NA | NA |
| 963 | 54.61 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 2 |
| 964 | 54.61 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 983 | 54.62 | wind | 5.0 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 984 | 54.62 | wind | 5.0 | 1440 | < th | dose independent | rect. | 12 | 23 |