BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0479800 Os09g0479800|AK109585
(465 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0479800 Similar to Pyrophosphate-dependent phosphofruc... 756 0.0
Os04g0469500 Phosphofructokinase family protein 452 e-127
Os01g0191700 Similar to Pyrophosphate-fructose-6-phosphate ... 362 e-100
Os05g0524400 Phosphofructokinase family protein 354 8e-98
Os10g0405600 Phosphofructokinase family protein 250 2e-66
Os05g0194900 Similar to Pyrophosphate-fructose-6-phosphate ... 244 7e-65
Os09g0415800 Phosphofructokinase family protein 244 1e-64
Os06g0151900 Phosphofructokinase family protein 137 1e-32
Os08g0439000 Phosphofructokinase family protein 110 2e-24
>Os09g0479800 Similar to Pyrophosphate-dependent phosphofructo-1-kinase-like
protein
Length = 465
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/465 (81%), Positives = 381/465 (81%)
Query: 1 MDDDGETPMPSLELHKLPTLAGAAIPNPIARHPLYHPSPSFFISPTDVVLRDILFDASPA 60
MDDDGETPMPSLELHKLPTLAGAAIPNPIARHPLYHPSPSFFISPTDVVLRDILFDASPA
Sbjct: 1 MDDDGETPMPSLELHKLPTLAGAAIPNPIARHPLYHPSPSFFISPTDVVLRDILFDASPA 60
Query: 61 SAAGEXXXXXXXXXXXXGPRREVAFDPATVRAAIFTCGGLCPGTNTVVRELVVGLSELXX 120
SAAGE GPRREVAFDPATVRAAIFTCGGLCPGTNTVVRELVVGLSEL
Sbjct: 61 SAAGERRRRHVAAYHRAGPRREVAFDPATVRAAIFTCGGLCPGTNTVVRELVVGLSELYG 120
Query: 121 XXXXXXXXXXXXXXXYSDEVVPLDPAAVEHWHKAGGAALGTSRGGFDLARIVDAIERHGF 180
YSDEVVPLDPAAVEHWHKAGGAALGTSRGGFDLARIVDAIERHGF
Sbjct: 121 VRGGVFGVRNGYRGFYSDEVVPLDPAAVEHWHKAGGAALGTSRGGFDLARIVDAIERHGF 180
Query: 181 NQVYAVGGDGTMRGAARIHXXXXXXXXXXXXXXGIPKTVDNDVGVVDRSFGFHTXXXXXX 240
NQVYAVGGDGTMRGAARIH GIPKTVDNDVGVVDRSFGFHT
Sbjct: 181 NQVYAVGGDGTMRGAARIHREVRRRGRLAVAVAGIPKTVDNDVGVVDRSFGFHTAVEAAQ 240
Query: 241 XXXXXXXXXXESAANGVGLVKLMGRSAGHIALHATLSSRDVDCCLIPEEDFYLRGAGGLF 300
ESAANGVGLVKLMGRSAGHIALHATLSSRDVDCCLIPEEDFYLRGAGGLF
Sbjct: 241 QAIAAGHVEAESAANGVGLVKLMGRSAGHIALHATLSSRDVDCCLIPEEDFYLRGAGGLF 300
Query: 301 DFLYRRIKDNXXXXXXXXXXXXQRLIPRXXXXXXXXXXXXXDESGNETFLDVGAWLKAEM 360
DFLYRRIKDN QRLIPR DESGNETFLDVGAWLKAEM
Sbjct: 301 DFLYRRIKDNGHAVVVVAEGAGQRLIPRTTTTSASGACAGADESGNETFLDVGAWLKAEM 360
Query: 361 RAWWEEEHAGEVFTVKYIDPTYMIRAVPANAGDNLYCTLLAHAAIHGAMAGYTGFVSGTI 420
RAWWEEEHAGEVFTVKYIDPTYMIRAVPANAGDNLYCTLLAHAAIHGAMAGYTGFVSGTI
Sbjct: 361 RAWWEEEHAGEVFTVKYIDPTYMIRAVPANAGDNLYCTLLAHAAIHGAMAGYTGFVSGTI 420
Query: 421 NGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSITNQPDFIRAGPTS 465
NGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSITNQPDFIRAGPTS
Sbjct: 421 NGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSITNQPDFIRAGPTS 465
>Os04g0469500 Phosphofructokinase family protein
Length = 487
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/384 (60%), Positives = 257/384 (66%), Gaps = 7/384 (1%)
Query: 78 GPRREVAFDPATVRAAIFTCGGLCPGTNTVVRELVVGLSELXXXXXXXXXXXXXXXXXYS 137
GPR VA DPA RAA+ TCGGLCPG NTV+RELVVGL EL
Sbjct: 107 GPRAGVAVDPARARAAVVTCGGLCPGLNTVLRELVVGLRELYGVRDVFGVAAGYRGFYGP 166
Query: 138 D-EVVPLDPAAVEHWHKAGGAALGTSRGGFDLARIVDAIERHGFNQVYAVGGDGTMRGAA 196
D + LD AAV+ WHK GG L T+RGGFDL +IVD I G+ QVYA+GGDGTMRGA
Sbjct: 167 DADHARLDLAAVDDWHKKGGTVLKTTRGGFDLNKIVDGIVARGYTQVYAIGGDGTMRGAV 226
Query: 197 RIHXXXXXXXXXXXXXXGIPKTVDNDVGVVDRSFGFHTXXXXXXXXXXXXXXXXESAANG 256
I GIPKTVDND+G++DRSFGF T SA NG
Sbjct: 227 AIFNEFKRRGLNISIT-GIPKTVDNDIGIIDRSFGFQTAVEIAQQAIDAAHVEAVSAVNG 285
Query: 257 VGLVKLMGRSAGHIALHATLSSRDVDCCLIPEEDFYLRGAGGLFDFLYRRIKDNXXXXXX 316
+GLVKLMGRS GHIALHATLSSRDVDCCLIPE DFYL G GGLF+FLY RIK
Sbjct: 286 IGLVKLMGRSTGHIALHATLSSRDVDCCLIPEVDFYLEGKGGLFEFLYERIKQKGHAVVV 345
Query: 317 XXXXXXQRLIPRXXXXXXXXXXXXXDESGNETFLDVGAWLKAEMRAWWEEEHAGEVFTVK 376
Q LIPR DESGN FLDVG WLK+E+ WW+ EH E+FTVK
Sbjct: 346 VAEGAGQELIPRTDDQKREQ-----DESGNIVFLDVGPWLKSELGKWWKREHPSELFTVK 400
Query: 377 YIDPTYMIRAVPANAGDNLYCTLLAHAAIHGAMAGYTGFVSGTINGNYAYIPMDEVAEAK 436
YIDPTYMIRAVPANA DNLYCTLLAH+AIHG MAGYTGFV G INGNY+YIP+++VA AK
Sbjct: 401 YIDPTYMIRAVPANATDNLYCTLLAHSAIHGIMAGYTGFVPGPINGNYSYIPLEDVAVAK 460
Query: 437 NPVDTKDHKWAWVRSITNQPDFIR 460
NPVD DHKWAWVRS+TNQPDF++
Sbjct: 461 NPVDVNDHKWAWVRSVTNQPDFMK 484
>Os01g0191700 Similar to Pyrophosphate-fructose-6-phosphate
1-phosphotransferase-like protein
(Pyrophosphate-dependent phosphofructo-1-kinase-like
protein)
Length = 531
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/446 (43%), Positives = 253/446 (56%), Gaps = 22/446 (4%)
Query: 14 LHKLPTLAGAAIPNPIARHPLYHPSPSFFISPTDVVLRDILFDASPASAAGEXXXXXXXX 73
L +LPT PNP+ +P Y +F++ D V + I+ + A
Sbjct: 65 LPELPTY-----PNPLQDNPAYSVVKQYFVNTDDTVTQKIVVHKTSARGT---------H 110
Query: 74 XXXXGPRREVAFDPATVRAAIFTCGGLCPGTNTVVRELVVGLSELXXXXXXXXXXXXXXX 133
GPR+ V F V AAI TCGGLCPG NTV+RELV GL ++
Sbjct: 111 FRRAGPRQRVYFQSDEVNAAIVTCGGLCPGLNTVIRELVCGLYDMYGVTSVVGIEGGYKG 170
Query: 134 XXYSDEVVPLDPAAVEHWHKAGGAALGTSRGGFDLARIVDAIERHGFNQVYAVGGDGTMR 193
YS V L P +V HK GG LGTSRGG D +IVD+I+ G NQVY +GGDGT +
Sbjct: 171 F-YSRNTVALTPKSVNDIHKRGGTVLGTSRGGHDTGKIVDSIKDRGINQVYIIGGDGTQK 229
Query: 194 GAARIHXXXXXXXXXXXXXXGIPKTVDNDVGVVDRSFGFHTXXXXXXXXXXXXXXXXESA 253
GA+ I+ G+PKT+DND+ V+D+SFGF T ESA
Sbjct: 230 GASVIYEEVRRRGLKCSVV-GVPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEAESA 288
Query: 254 ANGVGLVKLMGRSAGHIALHATLSSRDVDCCLIPEEDFYLRGAGGLFDFLYRRIKDNXXX 313
NG+G+VKLMGR++G IA++ATL+SRDVDCCLIPE FYL G GGL +F+ +R+KDN
Sbjct: 289 ENGIGVVKLMGRNSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLLEFIEKRLKDNGHM 348
Query: 314 XXXXXXXXXQRLIPRXXXXXXXXXXXXXDESGNETFLDVGAWLKAEMRAWWEEEHAGEVF 373
Q LI + D SGN+ LDVG WL +++ ++++ +
Sbjct: 349 VIVVAEGAGQDLIAKSMNFVDTQ-----DASGNKLLLDVGLWLSQKIKDHFKKKRNFPI- 402
Query: 374 TVKYIDPTYMIRAVPANAGDNLYCTLLAHAAIHGAMAGYTGFVSGTINGNYAYIPMDEVA 433
T+KYIDPTYMIRAV +NA DN+YCTLLAH+A+HGAMAGYTGF +NG +AYIP +
Sbjct: 403 TLKYIDPTYMIRAVRSNASDNVYCTLLAHSALHGAMAGYTGFTVAPVNGRHAYIPFYRIT 462
Query: 434 EAKNPVDTKDHKWAWVRSITNQPDFI 459
E +N V D WA V TNQP F+
Sbjct: 463 EKQNKVVITDRMWARVLCSTNQPCFL 488
>Os05g0524400 Phosphofructokinase family protein
Length = 567
Score = 354 bits (908), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 187/434 (43%), Positives = 241/434 (55%), Gaps = 19/434 (4%)
Query: 26 PNPIARHPLYHPSPSFFISPTDVVLRDILFDASPASAAGEXXXXXXXXXXXXGPRREVAF 85
PNP+ HP Y +F++ D V P + GPR++V F
Sbjct: 109 PNPLQDHPAYSTVKQYFVNEDDTV---------PQKVVVQKNSRRGVHFRRAGPRQKVYF 159
Query: 86 DPATVRAAIFTCGGLCPGTNTVVRELVVGLSELXXXXXXXXXXXXXXXXXYSDEVVPLDP 145
+ V+A I TCGGLCPG NTV+RELV GL+ + YS + L P
Sbjct: 160 ESDEVKACIVTCGGLCPGLNTVIRELVCGLAHMYNVSKIYGIQNGYKGF-YSSNYLTLTP 218
Query: 146 AAVEHWHKAGGAALGTSRGGFDLARIVDAIERHGFNQVYAVGGDGTMRGAARIHXXXXXX 205
+V+ HK GG LGTSRGG D +IVD I+ G NQVY +GGDGT +GA I
Sbjct: 219 KSVDDIHKRGGTVLGTSRGGHDTKKIVDNIQDRGINQVYIIGGDGTQKGAYEIFKEIRKR 278
Query: 206 XXXXXXXXGIPKTVDNDVGVVDRSFGFHTXXXXXXXXXXXXXXXXESAANGVGLVKLMGR 265
GIPKT+DND+ ++D+SFGF T SA NG+GLVKLMGR
Sbjct: 279 GLKVSVA-GIPKTIDNDIAIIDKSFGFDTAVEEAQRAIDSAHVEACSAENGIGLVKLMGR 337
Query: 266 SAGHIALHATLSSRDVDCCLIPEEDFYLRGAGGLFDFLYRRIKDNXXXXXXXXXXXXQRL 325
+G IA++ATL+SRDVDCCLIPE FY+ G GGL ++ RR+K+N Q L
Sbjct: 338 YSGFIAMYATLASRDVDCCLIPESPFYMDGEGGLLQYVERRLKENKHMVIVVAEGAGQDL 397
Query: 326 IPRXXXXXXXXXXXXXDESGNETFLDVGAWLKAEMRAWWEEEHAGEVFTVKYIDPTYMIR 385
I + D SGN+ LD+G WL +++ ++ + T+KYIDPTYMIR
Sbjct: 398 IAK-----SLSTSEQQDASGNKLLLDIGLWLTHKIKDHFKSKKME--MTIKYIDPTYMIR 450
Query: 386 AVPANAGDNLYCTLLAHAAIHGAMAGYTGFVSGTINGNYAYIPMDEVAEAKNPVDTKDHK 445
A+P+NA DN+YCTLLAH+AIHGAMAGY+ F G +NG +AYIP V +N V D
Sbjct: 451 AIPSNASDNVYCTLLAHSAIHGAMAGYS-FTVGNVNGRHAYIPFYRVTSTRNKVKITDRM 509
Query: 446 WAWVRSITNQPDFI 459
WA + S TNQP F+
Sbjct: 510 WARLLSSTNQPSFL 523
>Os10g0405600 Phosphofructokinase family protein
Length = 524
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 214/421 (50%), Gaps = 16/421 (3%)
Query: 42 FISPTDVVLRDILFDASPASAAGEX----XXXXXXXXXXXGPRREVAFDPATVRAAIFTC 97
+++ D L ++ ASP SA + GPR+++ F+P V+A I TC
Sbjct: 115 YVNDDDRALLKVIKFASPTSAGADCIDPDCSWVEQWVHRAGPRKQIYFEPQYVKAGIVTC 174
Query: 98 GGLCPGTNTVVRELVVGLSELXXXXXXXXXXXXXXXXXYSDEVVPLDPAAVEHWHKAGGA 157
GGLCPG N V+R++V+ L + VPL+ V++ + AGG+
Sbjct: 175 GGLCPGLNDVIRQIVLTLEKYGVKNIVGIQHGFRGFFEDHLAEVPLNRQVVQNINLAGGS 234
Query: 158 ALGTSRGGFDLARIVDAIERHGFNQVYAVGGDGTMRGAARIHXXXXXXXXXXXXXXGIPK 217
LG SRGG +++ IVD+I+ + ++ +GG+GT GA IH G+PK
Sbjct: 235 FLGVSRGGANISDIVDSIQARRLDMLFVLGGNGTHAGANLIHEECRKRKLKVSIV-GVPK 293
Query: 218 TVDNDVGVVDRSFGFHTXXXXXXXXXXXXXXXXESAANGVGLVKLMGRSAGHIALHATLS 277
T+DND+ ++D++FGF T SA +G+GLVKLMGRS+G I +HA+LS
Sbjct: 294 TIDNDILLMDKTFGFDTAVEAAQRAINSAYIEAHSAFHGIGLVKLMGRSSGFITMHASLS 353
Query: 278 SRDVDCCLIPEEDFYLRGAGGLFDFLYRRIKDNXXXXXXXXXXXXQRLIPRXXXXXXXXX 337
S VD CLIPE F L G G+ L I+ Q + +
Sbjct: 354 SGQVDICLIPEVPFTLDGPNGVLQHLEHLIETKGFALICVAEGAGQEHLQQSNAT----- 408
Query: 338 XXXXDESGNETFLDVGAWLKAEMRAWWEEEHAGEVFTVKYIDPTYMIRAVPANAGDNLYC 397
D SGN D+G L +++A ++E G VKYIDPTYM+RAV ANA D + C
Sbjct: 409 ----DASGNMILGDIGVHLHQKIKAHFKE--IGVHSDVKYIDPTYMVRAVRANASDAILC 462
Query: 398 TLLAHAAIHGAMAGYTGFVSGTINGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSITNQPD 457
T+L A+HGA AG++G +G N + Y+P+ EV ++ VD W + T QPD
Sbjct: 463 TVLGQNAVHGAFAGFSGITTGICNTHNVYLPISEVIKSTRFVDPNSRMWHRCLTSTGQPD 522
Query: 458 F 458
F
Sbjct: 523 F 523
>Os05g0194900 Similar to Pyrophosphate-fructose-6-phosphate
1-phosphotransferase-like protein
(Pyrophosphate-dependent phosphofructo-1-kinase-like
protein)
Length = 288
Score = 244 bits (624), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 123/246 (50%), Positives = 157/246 (63%), Gaps = 6/246 (2%)
Query: 214 GIPKTVDNDVGVVDRSFGFHTXXXXXXXXXXXXXXXXESAANGVGLVKLMGRSAGHIALH 273
G+PKT+DND+ V+DRSFGF T ESA NGVG+VKLMGR++G IA++
Sbjct: 2 GVPKTIDNDIAVIDRSFGFDTAVEEAQRAINAAHVEAESAENGVGVVKLMGRNSGFIAMY 61
Query: 274 ATLSSRDVDCCLIPEEDFYLRGAGGLFDFLYRRIKDNXXXXXXXXXXXXQRLIPRXXXXX 333
ATL+SRDVD CLIPE FYL G GGL +F +R+++N Q +I R
Sbjct: 62 ATLASRDVDLCLIPESPFYLEGKGGLLEFAEKRLRENGHMVIVVAEGAGQDVIARSMRLA 121
Query: 334 XXXXXXXXDESGNETFLDVGAWLKAEMRAWWEEEHAGEVFTVKYIDPTYMIRAVPANAGD 393
D SGN+ LDVG WL A+++ ++++ A T+KYIDPTYMIRAVP+NA D
Sbjct: 122 DAH-----DASGNKVLLDVGLWLCAKIKDHFKKK-ANFPITLKYIDPTYMIRAVPSNASD 175
Query: 394 NLYCTLLAHAAIHGAMAGYTGFVSGTINGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSIT 453
N+YC+LLAH+AIHGAMAGYTGF +NG +AYIP + E +N V D WA V T
Sbjct: 176 NVYCSLLAHSAIHGAMAGYTGFTVAPVNGRHAYIPFYRITEKQNKVVITDRMWARVLCST 235
Query: 454 NQPDFI 459
NQP F+
Sbjct: 236 NQPCFL 241
>Os09g0415800 Phosphofructokinase family protein
Length = 527
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 210/421 (49%), Gaps = 16/421 (3%)
Query: 42 FISPTDVVLRDILFDASPASAAGEXX----XXXXXXXXXXGPRREVAFDPATVRAAIFTC 97
+++ D L ++ ASP SA E GPR+E+ ++PA V+AAI TC
Sbjct: 118 YVNKDDRALLKVIKYASPTSAGAECVDPDCSWVEHWIHRAGPRKEIYYEPAEVKAAIVTC 177
Query: 98 GGLCPGTNTVVRELVVGLSELXXXXXXXXXXXXXXXXXYSDEVVPLDPAAVEHWHKAGGA 157
GGLCPG N V+R++V L + +PL VE+ + +GG+
Sbjct: 178 GGLCPGLNDVIRQIVFTLEIYGVKNIVGIQFGYRGFFEKGLKEMPLSRKVVENINLSGGS 237
Query: 158 ALGTSRGGFDLARIVDAIERHGFNQVYAVGGDGTMRGAARIHXXXXXXXXXXXXXXGIPK 217
LG SRGG + IVD+I+ + ++ +GG+G+ GA IH +PK
Sbjct: 238 FLGVSRGGAKTSEIVDSIQARRIDMLFVIGGNGSHAGANAIHEECRKRKLKVSVV-AVPK 296
Query: 218 TVDNDVGVVDRSFGFHTXXXXXXXXXXXXXXXXESAANGVGLVKLMGRSAGHIALHATLS 277
T+DND+ +D++FGF T SA +G+GLVKLMGRS+G IA+ A+LS
Sbjct: 297 TIDNDILFMDKTFGFDTAVEEAQRAINSAYIEARSAYHGIGLVKLMGRSSGFIAMQASLS 356
Query: 278 SRDVDCCLIPEEDFYLRGAGGLFDFLYRRIKDNXXXXXXXXXXXXQRLIPRXXXXXXXXX 337
S +D CLIPE F L G G+ L ++ Q L+ +
Sbjct: 357 SGQIDVCLIPEVSFTLDGEHGVMRHLEHLLEKKGFCVVCVAEGAGQDLLQKSNAT----- 411
Query: 338 XXXXDESGNETFLDVGAWLKAEMRAWWEEEHAGEVFTVKYIDPTYMIRAVPANAGDNLYC 397
D SGN D G ++ ++++ +++ G VKYIDPTYM+RA ANA D + C
Sbjct: 412 ----DASGNVILSDFGVHMQQKIKSHFKD--IGVPADVKYIDPTYMVRACRANASDAILC 465
Query: 398 TLLAHAAIHGAMAGYTGFVSGTINGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSITNQPD 457
T+L A+HGA AG++G SG N +YA++P+ EV V+ W + T QPD
Sbjct: 466 TVLGQNAVHGAFAGFSGITSGICNTHYAFLPITEVITKPKRVNPNSRMWHRCLTSTGQPD 525
Query: 458 F 458
F
Sbjct: 526 F 526
>Os06g0151900 Phosphofructokinase family protein
Length = 156
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 81/121 (66%), Gaps = 8/121 (6%)
Query: 342 DESGNETFLDVGAWLKAEMRAWWEEEHAGEVFT---VKYIDPTYMIRAVPANAGDNLYCT 398
D SGN LDVG WL +++ EH ++ T +KYIDPTYMIRA+P+NA DN+YCT
Sbjct: 1 DASGNSILLDVGLWLSQKIK-----EHFKKIKTTINLKYIDPTYMIRAIPSNASDNVYCT 55
Query: 399 LLAHAAIHGAMAGYTGFVSGTINGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSITNQPDF 458
LLAH+ +HGAMAGYTGF G +NG + YIP + E +N V D WA + S TNQP F
Sbjct: 56 LLAHSVVHGAMAGYTGFTVGQVNGRHCYIPFYRITEKQNKVSITDRMWARLLSSTNQPSF 115
Query: 459 I 459
+
Sbjct: 116 L 116
>Os08g0439000 Phosphofructokinase family protein
Length = 489
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 5/197 (2%)
Query: 42 FISPTDVVLRDILFDASPASAAGEX----XXXXXXXXXXXGPRREVAFDPATVRAAIFTC 97
+++ D L ++ +SP SA E GPR+E+ ++P V+AAI TC
Sbjct: 120 YVNSDDRALLKVIKYSSPNSAGAECIDPDCSWVEQWVHRAGPRKEIYYEPEEVKAAIVTC 179
Query: 98 GGLCPGTNTVVRELVVGLSELXXXXXXXXXXXXXXXXXYSDEVVPLDPAAVEHWHKAGGA 157
GGLCPG N V+R++V L + +PL VE+ + AGG+
Sbjct: 180 GGLCPGLNDVIRQIVFTLETYGVKNIVGIPFGYRGFFEKGLKEMPLSRHLVENINLAGGS 239
Query: 158 ALGTSRGGFDLARIVDAIERHGFNQVYAVGGDGTMRGAARIHXXXXXXXXXXXXXXGIPK 217
LG SRGG + IVD+I+ + ++ +GG+GT GA IH +PK
Sbjct: 240 FLGVSRGGAKTSEIVDSIQARRIDMLFVLGGNGTHAGANAIH-EECRKRKLKVSVVAVPK 298
Query: 218 TVDNDVGVVDRSFGFHT 234
T+DND+ ++D++FGF T
Sbjct: 299 TIDNDILLMDKTFGFDT 315
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 342 DESGNETFLDVGAWLKAEMRAWWEEEHAGEVFTVKYIDPTYMIRAVPANAGDNLYCTLLA 401
D SGN D+G ++ +++ +++ G VKYIDPTYM+RA ANA D + CT+L
Sbjct: 374 DASGNVILSDIGVHMQQKIKMHFKD--IGVPADVKYIDPTYMVRACRANASDAILCTVLG 431
Query: 402 HAAIHGAMAGYTGFVSGTINGNYAYIPMDEVAEAKNPVDTKDHKWAWVRSITNQPDF 458
A+HGA AG++G S N +Y Y+P+ EV V+ W + T QPDF
Sbjct: 432 QNAVHGAFAGFSGITSCICNTHYVYLPITEVITVPKRVNPNSRMWHRCLTSTGQPDF 488
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,010,744
Number of extensions: 599039
Number of successful extensions: 1206
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 10
Length of query: 465
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 361
Effective length of database: 11,605,545
Effective search space: 4189601745
Effective search space used: 4189601745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)