Os09g0415800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphofructokinase family protein.
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Os09g0415800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphofructokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.56 | 0.447 | 5.97 | -0.249 | 0.583 | -2.1 | 0.191 | -1.68 | 0.482 | 8.1 | 17.9 | 3001 | -- | -- |
| 92.94 | 0.449 | 6.01 | -0.317 | 0.588 | -1.68 | 0.29 | -- | 0.478 | 8.1 | 17.9 | 2989 | -- | -- |
| 90.63 | 0.443 | 5.97 | -0.235 | 0.586 | -2.11 | -- | -1.74 | 0.482 | 7.98 | 17.9 | 3049 | -- | -- |
| 93.05 | 0.449 | 6.01 | -0.367 | 0.588 | -1.65 | -- | -- | 0.461 | 8.02 | 17.9 | 2957 | -- | -- |
| 109.08 | 0.486 | 5.99 | -0.214 | -- | -2.26 | -- | -1.84 | 0.489 | -- | 17.8 | 2992 | -- | -- |
| 121.17 | 0.516 | 5.96 | 0.241 | 0.634 | -- | 0.0389 | -- | 0.701 | 7.81 | -- | -- | -- | -- |
| 121.18 | 0.515 | 5.96 | 0.242 | 0.634 | -- | -- | -- | 0.701 | 7.8 | -- | -- | -- | -- |
| 111.73 | 0.492 | 6.03 | -0.382 | -- | -1.71 | -- | -- | 0.457 | -- | 17.97 | 2908 | -- | -- |
| 95.07 | 0.454 | 5.99 | -- | 0.595 | -1.46 | -- | -- | 0.532 | 8.22 | 17.87 | 2774 | -- | -- |
| 142.92 | 0.559 | 5.97 | 0.25 | -- | -- | -- | -- | 0.71 | -- | -- | -- | -- | -- |
| 122.72 | 0.518 | 5.96 | -- | 0.636 | -- | -- | -- | 0.674 | 7.77 | -- | -- | -- | -- |
| 114.06 | 0.497 | 6.01 | -- | -- | -1.53 | -- | -- | 0.53 | -- | 17.84 | 2908 | -- | -- |
| 144.57 | 0.561 | 5.98 | -- | -- | -- | -- | -- | 0.682 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.94 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 6 | 88.98 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 10 | 89.13 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 12 | 89.19 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 22 | 89.34 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 28 | 89.36 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 37 | 89.45 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 38 | 89.46 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 50 | 89.53 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 72 | 89.65 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 96 | 89.82 | humidity | 50 | 43200 | < th | dose independent | sin | 7 | NA |
| 102 | 89.87 | humidity | 50 | 43200 | > th | dose independent | sin | 7 | NA |
| 134 | 89.97 | humidity | 50 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 156 | 90.07 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 161 | 90.09 | humidity | 50 | 43200 | < th | dose dependent | rect. | 12 | 10 |
| 183 | 90.18 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 214 | 90.27 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 237 | 90.32 | radiation | 40 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 238 | 90.32 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 250 | 90.34 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 253 | 90.36 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 258 | 90.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 272 | 90.39 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 273 | 90.39 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 275 | 90.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 294 | 90.44 | humidity | 50 | 43200 | < th | dose dependent | sin | 1 | NA |
| 299 | 90.45 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 321 | 90.51 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 330 | 90.53 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 385 | 90.65 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 388 | 90.66 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 391 | 90.66 | humidity | 50 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 395 | 90.67 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 406 | 90.69 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 412 | 90.70 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 415 | 90.70 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 417 | 90.70 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 19 |
| 446 | 90.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 459 | 90.71 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 466 | 90.71 | humidity | 50 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 571 | 90.78 | radiation | 40 | 43200 | < th | dose independent | sin | 15 | NA |
| 609 | 90.80 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 702 | 90.94 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 723 | 90.99 | humidity | 70 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 736 | 91.01 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 742 | 91.01 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 749 | 91.02 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 775 | 91.04 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 779 | 91.05 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 780 | 91.05 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 889 | 91.05 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 891 | 91.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 902 | 91.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 929 | 91.09 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 938 | 91.10 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 943 | 91.11 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 948 | 91.11 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 16 |