Os05g0194900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein).
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Os05g0194900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.4 | 0.57 | 7.37 | 2.2 | 1 | -1.49 | 0.765 | 1.14 | 0.726 | 9.45 | 26.6 | 677 | -- | -- |
| 148.46 | 0.567 | 7.4 | 1.96 | 1.04 | -1.45 | 0.413 | -- | 0.65 | 8.96 | 26.59 | 731 | -- | -- |
| 148.76 | 0.568 | 7.38 | 2.11 | 1.02 | -1.48 | -- | 0.564 | 0.694 | 9.02 | 26.57 | 713 | -- | -- |
| 148.97 | 0.568 | 7.4 | 1.97 | 1.05 | -1.46 | -- | -- | 0.655 | 8.83 | 26.57 | 739 | -- | -- |
| 190 | 0.642 | 7.38 | 2.27 | -- | -2.05 | -- | 0.472 | 0.847 | -- | 26.4 | 686 | -- | -- |
| 210.54 | 0.68 | 7.45 | 1.51 | 1.76 | -- | 0.701 | -- | 0.323 | 8.69 | -- | -- | -- | -- |
| 212.11 | 0.682 | 7.45 | 1.53 | 1.76 | -- | -- | -- | 0.322 | 8.63 | -- | -- | -- | -- |
| 190.62 | 0.643 | 7.38 | 2.18 | -- | -2.09 | -- | -- | 0.86 | -- | 26.32 | 708 | -- | -- |
| 241.32 | 0.724 | 7.47 | -- | 1.29 | -1.15 | -- | -- | 0.28 | 8.63 | 28.2 | 824 | -- | -- |
| 387.03 | 0.919 | 7.5 | 1.53 | -- | -- | -- | -- | 0.338 | -- | -- | -- | -- | -- |
| 273.62 | 0.774 | 7.49 | -- | 1.77 | -- | -- | -- | 0.152 | 8.56 | -- | -- | -- | -- |
| 307.75 | 0.817 | 7.46 | -- | -- | -1.71 | -- | -- | 0.484 | -- | 26.5 | 681 | -- | -- |
| 449 | 0.989 | 7.54 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.89 | temperature | 20 | 90 | > th | dose dependent | sin | 16 | NA |
| 22 | 144.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 26 | 145.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 34 | 146.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 36 | 146.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 37 | 146.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 41 | 146.42 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 58 | 146.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 97 | 148.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 182 | 149.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 207 | 150.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 225 | 150.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 267 | 151.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 272 | 151.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 312 | 151.54 | temperature | 25 | 90 | > th | dose independent | sin | 18 | NA |
| 328 | 151.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 332 | 151.76 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 18 |
| 366 | 151.97 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 14 |
| 376 | 152.02 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 401 | 152.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 407 | 152.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 420 | 152.18 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 429 | 152.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 12 |
| 472 | 152.44 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 500 | 152.61 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 15 |
| 502 | 152.62 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 12 |
| 657 | 153.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 698 | 153.82 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 702 | 153.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 717 | 154.05 | temperature | 25 | 90 | < th | dose independent | sin | 19 | NA |
| 724 | 154.06 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 824 | 154.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 13 |
| 959 | 155.33 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 9 |