Os04g0469500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphofructokinase family protein.
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Os04g0469500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphofructokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.65 | 0.35 | 11.7 | 0.486 | 0.75 | 0.917 | -0.379 | -0.461 | 0.0763 | 15.9 | 76.87 | 1337 | -- | -- |
| 55.94 | 0.348 | 11.7 | 0.516 | 0.757 | 0.896 | -0.393 | -- | 0.0706 | 15.9 | 77.08 | 1323 | -- | -- |
| 56.03 | 0.349 | 11.7 | 0.482 | 0.748 | 0.923 | -- | -0.427 | 0.0815 | 16 | 76 | 1335 | -- | -- |
| 56.26 | 0.349 | 11.7 | 0.517 | 0.751 | 0.887 | -- | -- | 0.0829 | 15.9 | 76.38 | 1330 | -- | -- |
| 69.11 | 0.387 | 11.7 | 0.619 | -- | 1.08 | -- | -0.851 | -0.00159 | -- | 110.4 | 245 | -- | -- |
| 74.29 | 0.404 | 11.7 | 0.685 | 0.668 | -- | -0.501 | -- | 0.0304 | 16.2 | -- | -- | -- | -- |
| 74.99 | 0.406 | 11.7 | 0.68 | 0.666 | -- | -- | -- | 0.0276 | 16.2 | -- | -- | -- | -- |
| 70.09 | 0.39 | 11.7 | 0.648 | -- | 1.03 | -- | -- | 0.00398 | -- | 137.1 | 235 | -- | -- |
| 63.13 | 0.37 | 11.7 | -- | 0.741 | 0.957 | -- | -- | 0.0583 | 16 | 75.14 | 1337 | -- | -- |
| 98.93 | 0.465 | 11.7 | 0.653 | -- | -- | -- | -- | 0.00992 | -- | -- | -- | -- | -- |
| 87.17 | 0.437 | 11.8 | -- | 0.653 | -- | -- | -- | -0.0481 | 16.3 | -- | -- | -- | -- |
| 81.17 | 0.42 | 11.8 | -- | -- | 1.03 | -- | -- | -0.0683 | -- | 170.3 | 239 | -- | -- |
| 110.19 | 0.49 | 11.8 | -- | -- | -- | -- | -- | -0.0625 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.16 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 2 | 54.18 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 90 | 55.43 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 104 | 55.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 107 | 55.52 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 110 | 55.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 137 | 55.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 142 | 55.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 154 | 55.79 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 179 | 55.94 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 195 | 55.96 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 198 | 55.97 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 199 | 55.97 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 215 | 56.04 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 221 | 56.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 232 | 56.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 244 | 56.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 245 | 56.12 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 316 | 56.25 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 330 | 56.27 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 342 | 56.29 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 374 | 56.36 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 384 | 56.41 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 391 | 56.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 430 | 56.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 443 | 56.47 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 464 | 56.49 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 476 | 56.50 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 502 | 56.52 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 526 | 56.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 534 | 56.59 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 535 | 56.59 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 555 | 56.63 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 559 | 56.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 575 | 56.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 585 | 56.68 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 595 | 56.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 620 | 56.71 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 670 | 56.79 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 675 | 56.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 681 | 56.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 767 | 56.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 800 | 56.89 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 854 | 57.03 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 868 | 57.06 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 928 | 57.15 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 953 | 57.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 958 | 57.20 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 967 | 57.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 975 | 57.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 15 |
| 981 | 57.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 990 | 57.24 | wind | 9 | 43200 | > th | dose independent | sin | 1 | NA |