Os08g0439000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphofructokinase family protein.
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Os08g0439000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphofructokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.4 | 0.765 | 6.7 | -1.65 | 1.23 | -2.73 | 1.05 | 0.883 | 0.0751 | 9.39 | 21.1 | 4359 | 5.43 | -- |
| 264.33 | 0.757 | 6.75 | -1.92 | 1.31 | -2.77 | 0.832 | -- | -0.0101 | 9.79 | 21.11 | 4223 | 2.36 | -- |
| 265.6 | 0.759 | 6.68 | -1.55 | 1.28 | -2.65 | -- | 1.15 | 0.127 | 9.76 | 21.1 | 4268 | 3.03 | -- |
| 265.61 | 0.759 | 6.74 | -1.87 | 1.23 | -2.91 | -- | -- | -0.00596 | 10.2 | 21.1 | 4180 | 1.35 | -- |
| 357.29 | 0.88 | 6.68 | -1.63 | -- | -2.73 | -- | 0.698 | 0.11 | -- | 21.2 | 4420 | 4.79 | -- |
| 540.76 | 1.09 | 6.99 | -3.68 | 1.27 | -- | 0.932 | -- | -1.12 | 9.82 | -- | -- | -- | -- |
| 543.49 | 1.09 | 6.99 | -3.64 | 1.26 | -- | -- | -- | -1.11 | 10.1 | -- | -- | -- | -- |
| 344.79 | 0.865 | 6.73 | -1.39 | -- | -3.67 | -- | -- | 0.259 | -- | 21.2 | 4694 | 8.57 | -- |
| 288.62 | 0.791 | 6.64 | -- | 1.22 | -3.59 | -- | -- | 0.454 | 10 | 20.69 | 24265 | 1.69 | -- |
| 640.21 | 1.18 | 7.03 | -3.65 | -- | -- | -- | -- | -1.12 | -- | -- | -- | -- | -- |
| 892.08 | 1.4 | 6.9 | -- | 1.28 | -- | -- | -- | -0.71 | 10.3 | -- | -- | -- | -- |
| 371.18 | 0.897 | 6.71 | -- | -- | -3.93 | -- | -- | 0.378 | -- | 21.1 | 23502 | 10.4 | -- |
| 992.41 | 1.47 | 6.93 | -- | -- | -- | -- | -- | -0.712 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.13 | radiation | 30 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 2 | 243.18 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 3 | 244.23 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 18 | 244.47 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 33 | 244.49 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 44 | 245.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 51 | 246.30 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 53 | 246.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 67 | 247.02 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 73 | 247.26 | humidity | 90 | 43200 | > th | dose dependent | sin | 5 | NA |
| 85 | 247.78 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 94 | 248.11 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 96 | 248.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 113 | 248.56 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 114 | 248.56 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 126 | 248.72 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 148 | 249.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 161 | 249.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 222 | 250.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 283 | 251.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 284 | 251.29 | radiation | 1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 324 | 252.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 359 | 252.39 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 363 | 252.46 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 366 | 252.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 370 | 252.58 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 385 | 252.70 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 421 | 253.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 422 | 253.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 441 | 253.26 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 447 | 253.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 449 | 253.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 14 |
| 456 | 253.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 460 | 253.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 7 |
| 532 | 254.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 537 | 254.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 628 | 255.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 634 | 255.67 | temperature | 15 | 43200 | > th | dose independent | sin | 9 | NA |
| 639 | 255.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 649 | 255.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 657 | 255.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 661 | 255.82 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 664 | 255.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 670 | 255.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 683 | 255.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 710 | 255.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 711 | 255.87 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 736 | 255.95 | humidity | 90 | 43200 | > th | dose independent | sin | 6 | NA |
| 742 | 256.01 | temperature | 20 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 749 | 256.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 755 | 256.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 785 | 256.25 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 799 | 256.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 826 | 256.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 833 | 256.65 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 867 | 256.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 932 | 257.24 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 970 | 257.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 21 |