Os10g0405600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphofructokinase family protein.
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Os10g0405600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphofructokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.52 | 0.28 | 11.5 | -0.451 | 0.68 | -0.544 | 0.295 | 0.599 | -0.154 | 7.88 | 66.1 | 1288 | -- | -- |
| 36.12 | 0.28 | 11.4 | -0.392 | 0.677 | -0.509 | 0.404 | -- | -0.13 | 7.85 | 221.6 | 1289 | -- | -- |
| 35.73 | 0.278 | 11.5 | -0.452 | 0.684 | -0.555 | -- | 0.687 | -0.158 | 7.98 | 99.31 | 1281 | -- | -- |
| 36.56 | 0.282 | 11.4 | -0.372 | 0.679 | -0.524 | -- | -- | -0.131 | 7.96 | 248.6 | 1284 | -- | -- |
| 56.67 | 0.351 | 11.5 | -0.44 | -- | -0.445 | -- | 0.671 | -0.141 | -- | 107.5 | 1442 | -- | -- |
| 44.52 | 0.313 | 11.4 | -0.306 | 0.601 | -- | 0.515 | -- | -0.0113 | 7.15 | -- | -- | -- | -- |
| 45.18 | 0.315 | 11.4 | -0.294 | 0.601 | -- | -- | -- | -0.0119 | 7.32 | -- | -- | -- | -- |
| 57.56 | 0.353 | 11.5 | -0.352 | -- | -0.419 | -- | -- | -0.108 | -- | 265.6 | 1435 | -- | -- |
| 40.1 | 0.295 | 11.4 | -- | 0.669 | -0.478 | -- | -- | -0.0765 | 7.95 | 197.3 | 1284 | -- | -- |
| 64.39 | 0.375 | 11.4 | -0.284 | -- | -- | -- | -- | -0.00182 | -- | -- | -- | -- | -- |
| 47.46 | 0.322 | 11.4 | -- | 0.599 | -- | -- | -- | 0.0209 | 7.35 | -- | -- | -- | -- |
| 60.76 | 0.363 | 11.4 | -- | -- | -0.381 | -- | -- | -0.0602 | -- | 311.8 | 1438 | -- | -- |
| 66.52 | 0.381 | 11.4 | -- | -- | -- | -- | -- | 0.0297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.93 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 10 | 33.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 15 | 33.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 32 | 33.73 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 48 | 33.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 58 | 34.12 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 73 | 34.25 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 10 |
| 80 | 34.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 86 | 34.37 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 92 | 34.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 109 | 34.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 116 | 34.60 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 139 | 34.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 140 | 34.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 171 | 35.01 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 182 | 35.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 220 | 35.21 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 19 |
| 221 | 35.22 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 2 |
| 224 | 35.24 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 227 | 35.24 | humidity | 60 | 4320 | < th | dose dependent | rect. | 17 | 16 |
| 238 | 35.29 | humidity | 60 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 245 | 35.32 | humidity | 60 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 246 | 35.33 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 276 | 35.35 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 18 |
| 288 | 35.39 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 293 | 35.41 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 314 | 35.47 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 315 | 35.47 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 12 |
| 337 | 35.52 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 338 | 35.52 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 347 | 35.53 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 354 | 35.54 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 407 | 35.58 | humidity | 50 | 4320 | > th | dose independent | sin | 11 | NA |
| 470 | 35.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 475 | 35.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 486 | 35.76 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 508 | 35.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 514 | 35.79 | humidity | 50 | 4320 | < th | dose independent | sin | 11 | NA |
| 515 | 35.79 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 545 | 35.80 | radiation | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 562 | 35.84 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 576 | 35.86 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 587 | 35.86 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 591 | 35.88 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 640 | 35.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 649 | 35.97 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 650 | 35.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 678 | 36.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 679 | 36.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 703 | 36.06 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 733 | 36.12 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 769 | 36.18 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 790 | 36.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 822 | 36.26 | radiation | 10 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 856 | 36.28 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 858 | 36.28 | radiation | 20 | 1440 | < th | dose dependent | sin | 13 | NA |
| 880 | 36.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 886 | 36.30 | radiation | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 899 | 36.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 920 | 36.32 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 922 | 36.32 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 926 | 36.34 | wind | 3 | 270 | < th | dose independent | rect. | 24 | 7 |
| 933 | 36.35 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 946 | 36.37 | radiation | 40 | 1440 | < th | dose dependent | sin | 12 | NA |
| 950 | 36.37 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 951 | 36.38 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 967 | 36.38 | radiation | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 974 | 36.39 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 5 |
| 989 | 36.39 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 994 | 36.40 | humidity | 50 | 270 | > th | dose independent | rect. | 5 | 9 |