BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0373300 Os09g0373300|Os09g0373300
         (200 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0373300  Strictosidine synthase family protein               307   3e-84
Os09g0373200  Strictosidine synthase family protein               288   1e-78
Os06g0553000                                                      173   8e-44
Os08g0175000                                                      150   9e-37
Os01g0698200  Strictosidine synthase family protein               148   2e-36
Os08g0442200  Strictosidine synthase family protein               146   8e-36
Os09g0374900  Strictosidine synthase family protein               146   9e-36
Os04g0689200                                                      139   1e-33
Os06g0623500                                                      135   2e-32
Os07g0544500                                                      135   2e-32
Os07g0543600  Strictosidine synthase family protein               134   3e-32
Os06g0623700                                                      134   5e-32
Os06g0623400                                                      131   4e-31
Os07g0543900                                                      108   2e-24
Os03g0263600  Strictosidine synthase family protein               107   4e-24
Os07g0544400                                                      107   7e-24
Os03g0750700  Strictosidine synthase family protein               103   8e-23
Os11g0142400  Strictosidine synthase family protein                80   7e-16
Os12g0195700                                                       75   2e-14
>Os09g0373300 Strictosidine synthase family protein
          Length = 200

 Score =  307 bits (787), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/200 (79%), Positives = 159/200 (79%)

Query: 1   MRKAGRRAFTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGDEPTYETKSIDPSLAVMT 60
           MRKAGRRAFTC                            GGGDEPTYETKSIDPSLAVMT
Sbjct: 1   MRKAGRRAFTCSAAAAAAAASALVKLLVLVAAVAATTSAGGGDEPTYETKSIDPSLAVMT 60

Query: 61  LPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVCSPEKKL 120
           LPAPVTGPESLAFDGRGDGPYTGGSD             TEFAYNSRHKSISVCSPEKKL
Sbjct: 61  LPAPVTGPESLAFDGRGDGPYTGGSDGRILRWRGGRLGWTEFAYNSRHKSISVCSPEKKL 120

Query: 121 VVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLD 180
           VVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLD
Sbjct: 121 VVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLD 180

Query: 181 VDQRTGDVYFTDSSTTYRRR 200
           VDQRTGDVYFTDSSTTYRRR
Sbjct: 181 VDQRTGDVYFTDSSTTYRRR 200
>Os09g0373200 Strictosidine synthase family protein
          Length = 364

 Score =  288 bits (738), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 143/160 (89%), Positives = 144/160 (90%)

Query: 40  GGGDEPTYETKSIDPSLAVMTLPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXX 99
           GGGDEPTYETKSIDPSLAVMTLPAPVTGPESLAFDGRGDGPYTGGSD             
Sbjct: 38  GGGDEPTYETKSIDPSLAVMTLPAPVTGPESLAFDGRGDGPYTGGSDGRILRWRGGRLGW 97

Query: 100 TEFAYNSRHKSISVCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGG 159
           TEFAYNSRHKS+ VCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLR PA GG
Sbjct: 98  TEFAYNSRHKSVGVCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRVPARGG 157

Query: 160 LAEVVATEAAGVPFNFLNGLDVDQRTGDVYFTDSSTTYRR 199
           LAEVVATEAAGVPFNFLNGLDVDQRTGDVYFTDSSTTYRR
Sbjct: 158 LAEVVATEAAGVPFNFLNGLDVDQRTGDVYFTDSSTTYRR 197
>Os06g0553000 
          Length = 179

 Score =  173 bits (438), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 87/92 (94%)

Query: 109 KSISVCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEA 168
           KS+ +CSPEKKLVVPES+CGRPLGLQFHHASGDLYVAD YLGLLRAPA GGLAEVV TE 
Sbjct: 65  KSVGICSPEKKLVVPESMCGRPLGLQFHHASGDLYVADEYLGLLRAPARGGLAEVVTTET 124

Query: 169 AGVPFNFLNGLDVDQRTGDVYFTDSSTTYRRR 200
           AGVPFNFLNGLDVDQRTGDVYFTDSS+TYR++
Sbjct: 125 AGVPFNFLNGLDVDQRTGDVYFTDSSSTYRQQ 156
>Os08g0175000 
          Length = 356

 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/143 (55%), Positives = 94/143 (65%), Gaps = 1/143 (0%)

Query: 59  MTLPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVCS-PE 117
           + LP  VTG ESLAFD    GPYTG SD             T FA++  ++ I +C+ P 
Sbjct: 50  LPLPDGVTGAESLAFDSSNHGPYTGVSDGRVLRWGGAAAGWTTFAHHENYRKIPMCTTPV 109

Query: 118 KKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLN 177
                 ES+CGRPLGL FH  +GDLY+ADAY GL+R    GG AEV+A  A GVPFNF+N
Sbjct: 110 APAEETESMCGRPLGLAFHDRTGDLYIADAYKGLMRVGPRGGEAEVLAAGADGVPFNFVN 169

Query: 178 GLDVDQRTGDVYFTDSSTTYRRR 200
           G+DVDQ TGDVYFTDSSTTY RR
Sbjct: 170 GIDVDQATGDVYFTDSSTTYPRR 192
>Os01g0698200 Strictosidine synthase family protein
          Length = 333

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 100/147 (68%), Gaps = 10/147 (6%)

Query: 59  MTLPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVCS--- 115
           + LP  V+G ESLAFDG+ DG YTG SD             T FAYN+ ++ I +CS   
Sbjct: 40  LPLPDGVSGAESLAFDGK-DGLYTGVSDGRVLKWGGSAAGWTTFAYNANYRKIPLCSSSE 98

Query: 116 --PEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPF 173
             PE++    ES+CGRPLG++    +G+LY+ADAY GL++    GG A+VVATEA GVPF
Sbjct: 99  VPPEER----ESICGRPLGIRLFRKTGELYIADAYKGLMKVGPDGGEAQVVATEADGVPF 154

Query: 174 NFLNGLDVDQRTGDVYFTDSSTTYRRR 200
           +FLNGLDVDQ TGD YFTDSS+TY RR
Sbjct: 155 HFLNGLDVDQATGDAYFTDSSSTYTRR 181
>Os08g0442200 Strictosidine synthase family protein
          Length = 350

 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 90/140 (64%), Gaps = 2/140 (1%)

Query: 61  LPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVCSPEKKL 120
           LP  VTG ESLAFD    GP+TG SD             T FAYN  ++S   C+   + 
Sbjct: 51  LPEGVTGAESLAFDSSNRGPFTGVSDGRVLKWGGDSAGWTTFAYNRNYRSNPTCASSSEE 110

Query: 121 VVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLD 180
              ES CGRPLGL FH  +G LY ADAY GL+R    GG A+V+ATEA GVPFN+LNG+D
Sbjct: 111 T--ESTCGRPLGLAFHLKTGILYFADAYKGLMRVGPRGGQADVLATEADGVPFNYLNGVD 168

Query: 181 VDQRTGDVYFTDSSTTYRRR 200
           VDQ TGDVYFTDSSTT  RR
Sbjct: 169 VDQDTGDVYFTDSSTTITRR 188
>Os09g0374900 Strictosidine synthase family protein
          Length = 362

 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 103/157 (65%), Gaps = 5/157 (3%)

Query: 48  ETKSI--DPSLAVMTLPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXX--XTEFA 103
           E KSI   P +  + L  P  GPESLAFD RG GPYTG S+               TEFA
Sbjct: 35  EMKSIYAGPKVVPVRLGRPAFGPESLAFDHRGGGPYTGVSNGRVLRWRADRRRPGWTEFA 94

Query: 104 YNSRHKSISVCSPEKKLVVPE-SVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAE 162
           +N +H +++ C+  KK      SVCGRPLG+QF   +G++Y+ADAYLGL+R    GG+AE
Sbjct: 95  HNYKHATVAECAARKKAAAAAESVCGRPLGVQFDRRTGEMYIADAYLGLMRVGRRGGMAE 154

Query: 163 VVATEAAGVPFNFLNGLDVDQRTGDVYFTDSSTTYRR 199
           VVA EA GV  NF NG+DVDQ TGDVYFTDSSTTY+R
Sbjct: 155 VVAAEAGGVALNFANGVDVDQATGDVYFTDSSTTYKR 191
>Os04g0689200 
          Length = 141

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 76/115 (66%), Gaps = 32/115 (27%)

Query: 118 KKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFN--- 174
           KKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLR PA GGLA+VV TEA  VPFN   
Sbjct: 7   KKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRVPARGGLAKVVTTEAIDVPFNFLN 66

Query: 175 -----------------------------FLNGLDVDQRTGDVYFTDSSTTYRRR 200
                                        FLNG DVDQRTGDVY TDSS+TYRRR
Sbjct: 67  RKILHYTIAHNKSKHTQALRHHTKEPFLFFLNGFDVDQRTGDVYLTDSSSTYRRR 121
>Os06g0623500 
          Length = 329

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 1/151 (0%)

Query: 50  KSIDPSLAV-MTLPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRH 108
           K+ID   +  + L   + GPES+AFDG+G GPY+G SD             + + Y+  +
Sbjct: 36  KTIDARRSQHLDLTGSLVGPESVAFDGKGHGPYSGVSDGRVMRWNGEAAGWSTYTYSPSY 95

Query: 109 KSISVCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEA 168
            +    +     V  ES CGRPLGL+FH  +G+LY+ADAY+GL+R    GG A V+AT+A
Sbjct: 96  TNNKCAASTLPTVQTESKCGRPLGLRFHFKTGNLYIADAYMGLMRVGPGGGEATVLATKA 155

Query: 169 AGVPFNFLNGLDVDQRTGDVYFTDSSTTYRR 199
            GVP  F NG+D+DQ TGDVYFTDSS  Y+R
Sbjct: 156 DGVPLRFTNGVDIDQVTGDVYFTDSSMNYQR 186
>Os07g0544500 
          Length = 351

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 95/145 (65%), Gaps = 3/145 (2%)

Query: 58  VMTLPAPVT--GPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVCS 115
           V TLP P T  GPES+AFD  GDGPY+G SD             T ++++  +      +
Sbjct: 45  VETLPLPTTLVGPESVAFDKFGDGPYSGVSDGRILRWDGADEGWTTYSHSPGYNVAKCMA 104

Query: 116 PE-KKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFN 174
           P+     + ES CGRPLGL+FH+ SG+LY+ADAY GL+R    GG A V+ATEA GVPF 
Sbjct: 105 PKLHPAELTESKCGRPLGLRFHNTSGNLYIADAYKGLMRVGPRGGEATVLATEADGVPFK 164

Query: 175 FLNGLDVDQRTGDVYFTDSSTTYRR 199
           F NG+DV+Q TG+VYFTDSST ++R
Sbjct: 165 FTNGVDVNQVTGEVYFTDSSTRFQR 189
>Os07g0543600 Strictosidine synthase family protein
          Length = 327

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 94/145 (64%), Gaps = 3/145 (2%)

Query: 58  VMTLPAPVT--GPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVCS 115
           V TLP P T  GPES+AFD  GDGPY+G SD             T +++   +      +
Sbjct: 45  VETLPLPTTLVGPESVAFDKFGDGPYSGVSDGRILRWDGADKGWTTYSHAPGYNVAKCMA 104

Query: 116 PE-KKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFN 174
           P+     + ES CGRPLGL+FH+ SG+LY+ADAY GL+R    GG A V+ATEA GVPF 
Sbjct: 105 PKLHPAELTESKCGRPLGLRFHNTSGNLYIADAYKGLMRVGPRGGEATVLATEADGVPFK 164

Query: 175 FLNGLDVDQRTGDVYFTDSSTTYRR 199
           F NG+DV+Q TG+VYFTDSST ++R
Sbjct: 165 FTNGVDVNQVTGEVYFTDSSTRFQR 189
>Os06g0623700 
          Length = 350

 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 88/141 (62%)

Query: 59  MTLPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVCSPEK 118
           + L   + GPES+AFDG+G GPY+G SD             + + Y+  +      +   
Sbjct: 49  LDLGGSLVGPESVAFDGKGRGPYSGVSDGRIMRWNGEAAGWSTYTYSPSYTKNKCAASTL 108

Query: 119 KLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNG 178
             V  ES CGRPLGL+FH+ +G+LY+ADAY+GL+R    GG A V+A +A GVP  F NG
Sbjct: 109 PTVQTESKCGRPLGLRFHYKTGNLYIADAYMGLMRVGPKGGEATVLAMKADGVPLRFTNG 168

Query: 179 LDVDQRTGDVYFTDSSTTYRR 199
           +D+DQ TGDVYFTDSS  Y+R
Sbjct: 169 VDIDQVTGDVYFTDSSMNYQR 189
>Os06g0623400 
          Length = 345

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 92/151 (60%), Gaps = 1/151 (0%)

Query: 50  KSIDPSLAV-MTLPAPVTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRH 108
           K+ID   +  + L   + GPES+AFDG+G GPY+G SD             + + Y+  +
Sbjct: 35  KTIDARRSQHLDLGGSLVGPESVAFDGKGRGPYSGVSDGRVMRWNGEAAGWSTYTYSPSY 94

Query: 109 KSISVCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEA 168
                 +     V  ES CGR LGL+FH  +G+LY+ADAY+GL+R    GG A V+AT+A
Sbjct: 95  TKNKCAASTLPTVQTESKCGRSLGLRFHFKTGNLYIADAYMGLMRVGPGGGEATVLATKA 154

Query: 169 AGVPFNFLNGLDVDQRTGDVYFTDSSTTYRR 199
            GVP  F NG+D+DQ TGDVYFTDSS  Y+R
Sbjct: 155 DGVPLRFTNGVDIDQVTGDVYFTDSSMNYQR 185
>Os07g0543900 
          Length = 250

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query: 124 ESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLDVDQ 183
           ES CGRPLGL+FH+ SG+LY+ADAY GL+R    GG A V+ATEA GVPF F NG+DV+Q
Sbjct: 12  ESKCGRPLGLRFHNTSGNLYIADAYKGLMRVGPRGGEATVLATEADGVPFKFTNGVDVNQ 71

Query: 184 RTGDVYFTDSSTTYRR 199
            TG+VYFTDSST ++R
Sbjct: 72  VTGEVYFTDSSTRFQR 87
>Os03g0263600 Strictosidine synthase family protein
          Length = 427

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 77/141 (54%), Gaps = 6/141 (4%)

Query: 65  VTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVC-----SPEKK 119
           V GPES+ FD  G GPY G +D               FA  S   S  VC     S  KK
Sbjct: 85  VFGPESIEFDRHGRGPYAGLADGRVVRWMGEDAGWETFAVMSPDWSEKVCANGVESTTKK 144

Query: 120 LVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGL 179
               E  CGRPLGL+FH  +G+LYVADAY GL+    +GG+A  +A E  G P NF N L
Sbjct: 145 QHEMERRCGRPLGLRFHGETGELYVADAYYGLMSVGPNGGVATSLAREVGGSPVNFANDL 204

Query: 180 DVDQRTGDVYFTDSSTTYRRR 200
           D+  R G V+FTD+ST Y R+
Sbjct: 205 DI-HRNGSVFFTDTSTRYNRK 224
>Os07g0544400 
          Length = 248

 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 61/76 (80%)

Query: 124 ESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLDVDQ 183
           ES CGRPLGL+FH+ SG+ Y+ADAY GL+R    GG A V+ATEA GVPF F NG+DV+Q
Sbjct: 12  ESKCGRPLGLRFHNTSGNFYIADAYRGLMRVGPRGGEATVLATEADGVPFKFTNGVDVNQ 71

Query: 184 RTGDVYFTDSSTTYRR 199
            TG+VYFTDSST ++R
Sbjct: 72  VTGEVYFTDSSTRFQR 87
>Os03g0750700 Strictosidine synthase family protein
          Length = 399

 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 81/140 (57%), Gaps = 8/140 (5%)

Query: 65  VTGPESLAFDGRGDGPYTGGSDXXXXXXXXXXXXXTEFAYNSRHKSISVC----SPEKKL 120
           V GPES+AFD  G GPYTG +D               FA++S + +  +C    SP   L
Sbjct: 72  VQGPESVAFDPLGRGPYTGVADGRVVRWDGARW--VYFAHSSPNWTAELCGHKASPLDYL 129

Query: 121 VVPESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLD 180
              E +CGR LGL+F   +GDLY+ADAY GLL+    GGLA  +ATEA GV FNF N   
Sbjct: 130 K-DEHICGRALGLRFDRRTGDLYIADAYFGLLKVGPDGGLATPLATEAEGVRFNFTN-DL 187

Query: 181 VDQRTGDVYFTDSSTTYRRR 200
                G+VYFTDSS  Y+RR
Sbjct: 188 DLDDDGNVYFTDSSIHYQRR 207
>Os11g0142400 Strictosidine synthase family protein
          Length = 289

 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 53/77 (68%)

Query: 124 ESVCGRPLGLQFHHASGDLYVADAYLGLLRAPAHGGLAEVVATEAAGVPFNFLNGLDVDQ 183
           E  CGRPLGL+F+  +G+LYVADAYLGL        ++  +  +  G PF+F NG+++D 
Sbjct: 22  EQECGRPLGLKFNSKTGELYVADAYLGLRVVSPGENVSRPLVPKRTGSPFSFSNGVEIDH 81

Query: 184 RTGDVYFTDSSTTYRRR 200
            TG +YFT++ST ++RR
Sbjct: 82  ETGVIYFTETSTRFQRR 98
>Os12g0195700 
          Length = 303

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 36/39 (92%)

Query: 162 EVVATEAAGVPFNFLNGLDVDQRTGDVYFTDSSTTYRRR 200
           EVV TEAAGVPFNFLNGLD+DQRT D+YFTDSS+TY RR
Sbjct: 102 EVVTTEAAGVPFNFLNGLDIDQRTSDIYFTDSSSTYWRR 140
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,386,427
Number of extensions: 265318
Number of successful extensions: 524
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 19
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)