Os11g0142400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0142400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Strictosidine synthase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.37	(0.048)	R²	:	0.718
β₁	:	-4.56	(0.181)	R²_dD	:	0.442	R²_D	:	0.158
β₂	:	0.96	(0.116)	R²_dC	:	0.0446	R²_C	:	-0.0274
β₃	:	4.17	(0.145)	R²_dE	:	0.575	R²_E	:	0.235
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.804	(0.104)	R²_dN8	:	0.0446	R²_N8	:	-0.054
σ	:	0.894
deviance	:	368.41
__

_____

C
peak time of C	:	11.2
E
wheather	:	temperature
threshold	:	24.16
memory length	:	1263
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	11.7
open length of G	:	8.87

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
349.01	0.878	6.52	-5.91	0.943	4.58	-1.29	-5.45	-1.04	11.6	24.46	1266	11.9	8.39
366.93	0.892	6.38	-4.58	0.877	4.18	-1.06	--	-0.82	11.3	23.84	1259	11.9	8.57
355.46	0.878	6.5	-5.83	0.95	4.54	--	-4.87	-0.999	11.2	24.58	1266	11.7	8.62
368.41	0.894	6.37	-4.56	0.96	4.17	--	--	-0.804	11.2	24.16	1263	11.7	8.87
391.89	0.922	6.52	-5.79	--	4.28	--	-4.67	-0.981	--	24.85	1355	12.6	8.84
999.64	1.48	6.25	-3.25	0.652	--	1.59	--	-0.227	5.38	--	--	--	--
1001.52	1.48	6.25	-3.24	0.722	--	--	--	-0.232	6.82	--	--	--	--
402.57	0.934	6.38	-4.5	--	3.86	--	--	-0.705	--	24.55	1353	13	8.78
867.57	1.37	6.23	--	1.4	3.7	--	--	-0.185	11.9	23.8	1087	13.4	7.73
1028.77	1.5	6.26	-3.22	--	--	--	--	-0.218	--	--	--	--	--
1278.08	1.67	6.16	--	0.685	--	--	--	0.129	7.1	--	--	--	--
858.65	1.36	6.2	--	--	3.01	--	--	-0.011	--	25.3	1446	16.5	5.57
1302.85	1.68	6.18	--	--	--	--	--	0.139	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	375.34	temperature	25	1440	> th	dose dependent	rect.	13	8
6	376.12	temperature	25	1440	> th	dose dependent	rect.	15	6
7	376.16	temperature	25	1440	> th	dose dependent	rect.	16	4
16	376.78	temperature	25	1440	> th	dose dependent	sin	17	NA
26	377.51	temperature	25	1440	> th	dose dependent	rect.	12	20
137	386.32	temperature	25	1440	> th	dose dependent	rect.	2	20
203	387.83	temperature	25	1440	> th	dose dependent	no	NA	NA
228	390.59	temperature	25	1440	> th	dose dependent	rect.	17	23
352	414.25	temperature	30	1440	< th	dose independent	rect.	14	17
353	414.33	temperature	30	1440	< th	dose independent	rect.	14	15
358	414.53	temperature	30	1440	< th	dose independent	rect.	14	10
363	414.57	temperature	30	1440	< th	dose independent	rect.	14	5
366	414.67	temperature	30	1440	< th	dose independent	rect.	14	8
385	415.85	temperature	30	1440	> th	dose independent	rect.	14	5
442	419.52	temperature	30	1440	< th	dose independent	sin	17	NA
497	423.54	temperature	30	1440	< th	dose independent	rect.	10	6
500	423.60	temperature	30	1440	> th	dose independent	sin	17	NA
502	423.77	temperature	30	1440	< th	dose independent	rect.	18	22
577	426.98	temperature	30	1440	< th	dose independent	rect.	23	20
579	426.99	temperature	30	1440	< th	dose independent	rect.	21	22
581	427.03	temperature	30	1440	< th	dose independent	rect.	2	17
585	427.03	temperature	30	1440	< th	dose independent	rect.	2	23
589	427.06	temperature	30	1440	< th	dose independent	rect.	23	23
595	427.10	temperature	30	1440	< th	dose independent	no	NA	NA
599	427.10	temperature	30	1440	< th	dose independent	rect.	6	23
600	427.11	temperature	30	1440	< th	dose independent	rect.	2	20
633	427.22	temperature	30	1440	< th	dose independent	rect.	6	13
638	427.22	temperature	30	1440	< th	dose independent	rect.	6	19
693	428.13	temperature	30	1440	< th	dose independent	rect.	23	17
694	428.14	temperature	30	1440	< th	dose independent	rect.	21	19
696	428.23	temperature	30	1440	< th	dose independent	rect.	2	14
707	428.49	temperature	30	1440	< th	dose independent	rect.	6	10
737	429.67	temperature	30	1440	> th	dose independent	rect.	17	23
779	431.29	temperature	30	1440	> th	dose independent	rect.	10	6
792	432.30	temperature	30	1440	> th	dose independent	no	NA	NA
892	434.01	temperature	10	1440	> th	dose dependent	rect.	16	3