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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0698200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Strictosidine synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0383) R2 : 0.00152
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0673 (0.0807) R2dN8 : 0.00197 R2N8 : 0.00152
σ : 0.721
deviance : 238.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.24 0.707 3.2 0.199 0.261 0.555 -0.0673 0.278 0.132 18.4 25.24 691 -- --
226.33 0.701 3.19 0.276 0.274 0.556 -0.163 -- 0.154 18.2 25.28 667 -- --
226.25 0.701 3.2 0.192 0.261 0.555 -- 0.309 0.13 18.5 25.22 690 -- --
226.39 0.701 3.19 0.279 0.278 0.571 -- -- 0.161 18.4 25.3 668 -- --
227 0.702 3.2 0.136 -- 0.533 -- 0.439 0.0971 -- 25 1009 -- --
237.2 0.722 3.23 0.111 0.151 -- -0.122 -- -0.0522 13.4 -- -- -- --
237.25 0.721 3.23 0.107 0.151 -- -- -- -0.0531 13.1 -- -- -- --
227.5 0.702 3.18 0.273 -- 0.547 -- -- 0.141 -- 24.92 1012 -- --
228.31 0.704 3.2 -- 0.248 0.51 -- -- 0.108 18.2 25.2 668 -- --
238.67 0.722 3.23 0.101 -- -- -- -- -0.056 -- -- -- -- --
237.55 0.721 3.23 -- 0.149 -- -- -- -0.065 13.1 -- -- -- --
229.34 0.705 3.2 -- -- 0.49 -- -- 0.0916 -- 24.96 1009 -- --
238.94 0.721 3.23 -- -- -- -- -- -0.0673 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.42 wind 9.0 90 > th dose independent rect. 13 2
2 220.46 wind 9.0 90 > th dose dependent rect. 13 2
5 221.53 wind 7.0 10 > th dose dependent rect. 12 3
8 221.69 wind 9.0 10 > th dose independent rect. 13 1
62 225.07 humidity 90.0 10 < th dose dependent rect. 21 10
66 225.60 temperature 25.0 720 > th dose independent rect. 22 21
67 225.65 temperature 25.0 720 > th dose independent rect. 13 20
77 225.88 temperature 25.0 720 < th dose independent rect. 1 21
79 225.90 radiation 10.0 720 < th dose dependent rect. 14 16
85 225.96 temperature 25.0 720 < th dose independent rect. 12 21
93 226.06 radiation 10.0 720 < th dose dependent rect. 14 5
94 226.07 humidity 90.0 30 < th dose independent rect. 12 19
98 226.13 wind 9.0 10 > th dose dependent rect. 17 21
102 226.14 humidity 50.0 720 > th dose independent rect. 4 9
106 226.16 radiation 10.0 720 < th dose dependent rect. 14 9
113 226.19 radiation 10.0 720 < th dose dependent rect. 14 13
157 226.30 temperature 25.0 720 > th dose independent rect. 14 4
167 226.38 temperature 25.0 720 < th dose independent rect. 7 23
173 226.43 radiation 1.0 720 > th dose independent sin 19 NA
181 226.46 radiation 10.0 720 < th dose dependent sin 16 NA
182 226.47 temperature 25.0 720 > th dose independent rect. 6 21
187 226.51 temperature 25.0 720 < th dose independent rect. 4 23
199 226.55 wind 9.0 30 < th dose independent rect. 7 23
204 226.56 temperature 25.0 720 < th dose independent no NA NA
209 226.57 humidity 50.0 4320 > th dose independent rect. 22 12
217 226.60 radiation 10.0 720 < th dose dependent rect. 14 11
218 226.61 radiation 1.0 720 > th dose independent rect. 9 9
225 226.62 temperature 20.0 1440 > th dose dependent rect. 23 2
227 226.64 temperature 25.0 720 > th dose independent no NA NA
237 226.71 radiation 30.0 10 > th dose independent rect. 13 1
244 226.73 temperature 25.0 720 < th dose independent rect. 17 23
257 226.77 temperature 30.0 270 < th dose dependent rect. 10 21
258 226.78 radiation 1.0 720 > th dose independent rect. 13 16
264 226.79 radiation 1.0 720 > th dose independent rect. 13 6
277 226.81 temperature 30.0 270 < th dose dependent rect. 11 19
309 226.92 wind 7.0 30 < th dose independent rect. 23 22
324 226.99 wind 7.0 90 < th dose independent rect. 9 11
338 227.01 temperature 10.0 90 > th dose dependent rect. 13 23
343 227.03 temperature 25.0 720 > th dose independent rect. 16 23
345 227.04 humidity 80.0 10 < th dose independent rect. 22 2
347 227.04 radiation 30.0 720 < th dose independent rect. 16 9
364 227.08 radiation 10.0 720 < th dose dependent rect. 9 21
365 227.09 wind 7.0 30 < th dose independent rect. 7 14
373 227.13 radiation 10.0 30 > th dose independent rect. 17 14
376 227.13 radiation 10.0 30 > th dose dependent rect. 17 14
378 227.14 atmosphere 995.0 720 > th dose independent rect. 1 15
396 227.18 temperature 20.0 90 > th dose dependent rect. 13 23
400 227.20 humidity 70.0 1440 > th dose independent rect. 8 2
401 227.20 wind 9.0 30 > th dose dependent sin 2 NA
409 227.23 humidity 70.0 1440 > th dose independent rect. 7 4
410 227.23 wind 9.0 270 < th dose independent rect. 7 11
432 227.25 humidity 70.0 1440 < th dose independent rect. 7 4
435 227.25 temperature 25.0 720 > th dose independent rect. 13 14
450 227.28 radiation 1.0 720 < th dose independent rect. 15 1
471 227.32 radiation 1.0 720 > th dose independent rect. 15 3
476 227.34 humidity 70.0 1440 > th dose independent rect. 22 13
481 227.35 radiation 10.0 720 < th dose independent rect. 14 5
513 227.39 humidity 70.0 1440 > th dose independent rect. 1 10
552 227.44 temperature 10.0 720 > th dose independent rect. 16 9
554 227.44 temperature 10.0 720 > th dose independent rect. 1 15
563 227.46 humidity 80.0 30 < th dose independent rect. 21 10
577 227.49 atmosphere 1010.0 4320 > th dose independent rect. 7 1
578 227.49 radiation 1.0 720 > th dose independent rect. 15 14
582 227.50 temperature 25.0 720 < th dose independent rect. 14 5
598 227.53 temperature 10.0 720 > th dose independent rect. 4 9
599 227.53 atmosphere 995.0 720 > th dose independent rect. 4 9
600 227.53 atmosphere 1015.0 720 < th dose independent rect. 4 9
607 227.53 temperature 10.0 720 > th dose independent rect. 13 15
615 227.54 humidity 90.0 720 < th dose independent rect. 14 4
631 227.56 temperature 25.0 1440 < th dose independent rect. 18 7
649 227.60 radiation 10.0 720 < th dose dependent rect. 9 14
661 227.63 precipitation 0.1 10 > th dose independent rect. 17 3
683 227.63 precipitation 0.1 10 > th dose dependent rect. 17 3
697 227.63 temperature 30.0 270 < th dose dependent rect. 11 10
706 227.64 radiation 1.0 720 < th dose dependent rect. 17 6
726 227.69 temperature 25.0 1440 < th dose independent rect. 7 1
728 227.70 temperature 25.0 1440 > th dose independent rect. 7 1
770 227.79 temperature 25.0 1440 < th dose independent rect. 20 1
787 227.83 radiation 1.0 720 < th dose independent rect. 15 8
801 227.86 temperature 25.0 720 > th dose independent sin 21 NA
806 227.87 temperature 25.0 720 < th dose independent sin 19 NA
810 227.88 wind 3.0 10 > th dose independent rect. 21 2
813 227.88 humidity 80.0 10 > th dose independent rect. 17 12
837 227.91 radiation 10.0 10 > th dose independent rect. 6 1
867 227.91 wind 9.0 720 < th dose independent rect. 23 19
869 227.91 radiation 10.0 10 > th dose dependent rect. 6 1
899 227.93 radiation 10.0 720 < th dose independent rect. 14 13
900 227.93 temperature 25.0 720 < th dose independent rect. 7 16
904 227.93 humidity 50.0 90 > th dose dependent rect. 16 13
908 227.94 temperature 25.0 1440 > th dose independent rect. 18 7
942 227.99 temperature 10.0 270 > th dose dependent rect. 6 21
963 228.04 radiation 1.0 720 < th dose independent rect. 17 6
970 228.05 atmosphere 995.0 720 > th dose independent rect. 16 9
977 228.06 wind 3.0 90 > th dose independent rect. 21 1
985 228.07 atmosphere 995.0 720 > th dose independent rect. 13 15
986 228.07 wind 5.0 90 > th dose dependent rect. 1 7