Os08g0442200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Strictosidine synthase family protein.
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Os08g0442200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Strictosidine synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.66 | 0.661 | 2.91 | 0.938 | 0.288 | -0.495 | -0.13 | 7.43 | -0.0638 | 5.67 | 31.4 | 4028 | -- | -- |
| 201.94 | 0.662 | 3.07 | -0.177 | 0.298 | 0.293 | 0.0606 | -- | -0.253 | 5.74 | 31.2 | 12458 | -- | -- |
| 197.59 | 0.655 | 2.9 | 0.953 | 0.292 | -0.517 | -- | 7.61 | -0.0633 | 5.79 | 31.3 | 3762 | -- | -- |
| 199.97 | 0.659 | 3.04 | -0.165 | 0.302 | 0.403 | -- | -- | -0.149 | 5.41 | 27.84 | 3721 | -- | -- |
| 201.97 | 0.662 | 2.91 | 0.97 | -- | -0.507 | -- | 7.59 | -0.0573 | -- | 31.4 | 3863 | -- | -- |
| 205.69 | 0.672 | 3.05 | -0.0551 | 0.313 | -- | -0.0779 | -- | -0.125 | 5.43 | -- | -- | -- | -- |
| 205.71 | 0.672 | 3.05 | -0.0553 | 0.313 | -- | -- | -- | -0.125 | 5.45 | -- | -- | -- | -- |
| 204.24 | 0.666 | 3.04 | -0.158 | -- | 0.447 | -- | -- | -0.0663 | -- | 29.8 | 3957 | -- | -- |
| 200.3 | 0.659 | 3.05 | -- | 0.308 | 0.407 | -- | -- | -0.118 | 5.88 | 29.3 | 3918 | -- | -- |
| 210.8 | 0.678 | 3.05 | -0.0448 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 205.79 | 0.671 | 3.05 | -- | 0.312 | -- | -- | -- | -0.119 | 5.46 | -- | -- | -- | -- |
| 204.89 | 0.667 | 3.04 | -- | -- | 0.414 | -- | -- | -0.0528 | -- | 29.83 | 4003 | -- | -- |
| 210.85 | 0.678 | 3.05 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.12 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 3 | 195.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 7 | 195.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 8 | 195.36 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 9 | 195.36 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 1 |
| 10 | 195.38 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 7 | 1 |
| 11 | 195.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 16 | 195.49 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 17 | 195.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 38 | 195.58 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 41 | 195.69 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 44 | 195.80 | temperature | 25 | 10 | < th | dose independent | rect. | 7 | 1 |
| 51 | 195.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 68 | 195.93 | wind | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 75 | 196.03 | wind | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 120 | 196.29 | wind | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 128 | 196.33 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 1 |
| 137 | 196.33 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 166 | 196.46 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 186 | 196.52 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 194 | 196.57 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 195 | 196.57 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 200 | 196.61 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 227 | 196.65 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 256 | 196.70 | radiation | 30 | 720 | > th | dose independent | rect. | 7 | 1 |
| 276 | 196.73 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 293 | 196.78 | radiation | 1 | 10 | < th | dose independent | rect. | 5 | 1 |
| 354 | 197.04 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 402 | 197.18 | wind | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 406 | 197.20 | radiation | 40 | 720 | < th | dose independent | rect. | 22 | 13 |
| 423 | 197.21 | temperature | 30 | 1440 | > th | dose dependent | sin | 9 | NA |
| 426 | 197.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 432 | 197.26 | radiation | 40 | 720 | < th | dose independent | rect. | 23 | 11 |
| 433 | 197.26 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 10 |
| 453 | 197.28 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 15 |
| 454 | 197.28 | atmosphere | 995 | 720 | > th | dose independent | rect. | 5 | 15 |
| 471 | 197.32 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 481 | 197.35 | radiation | 40 | 720 | < th | dose independent | rect. | 8 | 2 |
| 484 | 197.36 | temperature | 30 | 30 | > th | dose independent | sin | 4 | NA |
| 491 | 197.37 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 511 | 197.40 | temperature | 30 | 30 | < th | dose independent | rect. | 8 | 23 |
| 518 | 197.44 | wind | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 519 | 197.44 | atmosphere | 995 | 720 | > th | dose independent | rect. | 13 | 7 |
| 521 | 197.44 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 537 | 197.46 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 538 | 197.46 | atmosphere | 995 | 720 | > th | dose independent | rect. | 8 | 17 |
| 541 | 197.47 | temperature | 30 | 4320 | < th | dose independent | sin | 10 | NA |
| 593 | 197.56 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 20 | 18 |
| 600 | 197.58 | atmosphere | 995 | 720 | > th | dose independent | rect. | 8 | 9 |
| 618 | 197.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 632 | 197.70 | radiation | 20 | 270 | < th | dose independent | rect. | 21 | 13 |
| 633 | 197.70 | radiation | 40 | 720 | < th | dose independent | rect. | 18 | 16 |
| 665 | 197.75 | temperature | 30 | 30 | > th | dose independent | rect. | 9 | 5 |
| 712 | 197.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 736 | 197.79 | wind | 1 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 787 | 197.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 792 | 197.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 8 | 23 |
| 800 | 197.82 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 801 | 197.82 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 15 |
| 809 | 197.83 | wind | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 818 | 197.86 | radiation | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 822 | 197.87 | wind | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 824 | 197.87 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 827 | 197.88 | wind | 1 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 834 | 197.89 | radiation | 10 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 835 | 197.90 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 2 |
| 846 | 197.94 | wind | 1 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 881 | 197.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 930 | 198.01 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 8 |
| 931 | 198.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 943 | 198.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 996 | 198.06 | temperature | 30 | 90 | < th | dose independent | rect. | 23 | 16 |