Os09g0374900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Strictosidine synthase family protein.
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Os09g0374900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Strictosidine synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.76 | 0.695 | 5.09 | -2.57 | 0.645 | 1.07 | 1.16 | 1.03 | -1.01 | 9.91 | 24.6 | 4190 | -- | -- |
| 219.58 | 0.69 | 5.06 | -2.28 | 0.654 | 1.12 | 1.17 | -- | -0.93 | 9.84 | 24.59 | 4234 | -- | -- |
| 223.81 | 0.697 | 5.1 | -2.58 | 0.624 | 1.06 | -- | 1.22 | -1.02 | 10 | 24.5 | 4141 | -- | -- |
| 224.98 | 0.699 | 5.05 | -2.23 | 0.645 | 1.12 | -- | -- | -0.924 | 10.1 | 24.54 | 4233 | -- | -- |
| 242.91 | 0.726 | 5.11 | -2.59 | -- | 1.21 | -- | 1.44 | -0.996 | -- | 24.7 | 3808 | -- | -- |
| 251.66 | 0.744 | 5.12 | -2.73 | 0.708 | -- | 1.17 | -- | -1.21 | 10.4 | -- | -- | -- | -- |
| 257.18 | 0.751 | 5.12 | -2.68 | 0.701 | -- | -- | -- | -1.2 | 10.5 | -- | -- | -- | -- |
| 244.74 | 0.729 | 5.06 | -2.2 | -- | 1.28 | -- | -- | -0.889 | -- | 24.73 | 3811 | -- | -- |
| 247.2 | 0.732 | 4.93 | -- | 0.666 | 2.17 | -- | -- | -0.33 | 10.5 | 19.1 | 47520 | -- | -- |
| 287.34 | 0.792 | 5.14 | -2.69 | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
| 446.19 | 0.988 | 5.05 | -- | 0.72 | -- | -- | -- | -0.905 | 10.8 | -- | -- | -- | -- |
| 274.53 | 0.772 | 4.93 | -- | -- | 2.19 | -- | -- | -0.316 | -- | 19.32 | 47520 | -- | -- |
| 478.29 | 1.02 | 5.07 | -- | -- | -- | -- | -- | -0.908 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 2 | 216.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 8 | 216.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 12 | 216.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 24 | 217.05 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 28 | 217.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 71 | 217.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 14 |
| 93 | 218.01 | temperature | 25 | 4320 | > th | dose independent | sin | 14 | NA |
| 177 | 218.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 214 | 219.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 285 | 219.95 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 293 | 220.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 300 | 220.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 320 | 220.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 327 | 220.18 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 341 | 220.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 374 | 220.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 379 | 220.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 381 | 220.45 | temperature | 30 | 4320 | < th | dose dependent | rect. | 14 | 7 |
| 388 | 220.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 5 |
| 404 | 220.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 409 | 220.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 417 | 220.64 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 17 |
| 453 | 220.75 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 472 | 220.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 14 |
| 526 | 220.90 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 541 | 220.92 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 548 | 220.93 | temperature | 10 | 4320 | > th | dose dependent | sin | 18 | NA |
| 678 | 221.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 22 |
| 680 | 221.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 697 | 221.12 | temperature | 30 | 4320 | < th | dose dependent | sin | 18 | NA |
| 755 | 221.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 756 | 221.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 762 | 221.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 21 |
| 799 | 221.24 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 803 | 221.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 832 | 221.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 952 | 221.39 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 957 | 221.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 18 |